Cmc01g0003521 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0003521
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr01: 497795 .. 500010 (+)
RNA-Seq Expression	Cmc01g0003521
Synteny	Cmc01g0003521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAATCTATTTCTAGAATTTAAGCACATCAATCAAGAATGTCAACAAATTAGGTGCAATCAAAGACAGACTTATCATTATCTTTATGGACTTCTTTTCTTAGGCTTTTATTAGATATAATTATTGAGTATGAAACTCTTCCAATGGTCTTTTTATTTAGGTTAGTAGAATTCAGATATTAGGTTTGGAAAAATGTGTTTAGTCATTCAAGAATTTTAATTTTAAAAAATTGTTTAAAGAATCGGTGGAATTAAATATTACATTAGATCTTTAACCATTATTAGGACATCCTCTCATGTTCAAAACCATTTGAAATTTAAAAATTCATAGATTATTGTGTATTATAAAAAATAAAAAATAAAAACTAAATACATTGATCATACACATTTGAAATAAATAATAAAACCTCAAAAAGCTAAACCAAATATTTAGTAGATGACTTTGAGTTGGAACATGAACTCACACACACCCATCCAAGAGAAGTCCCACATGAACTAATTTATTAGTTGGAAAAGTGAATCTAAAATGCCAACGATTTCAACTCCTCAATTAAAGAATCCAAATTTGAATATGAAGATCCTTCTTCTCCAACTGCCCACTTTGCCTTCTTTGCAAATTCTGTTGCTCTCTTTCTCATCTCTTCTCCTTCTTTCTCCATTATTCTTCTAATTGCCTTCTCCACAGCTTCACTTTCTATGAAATCTCCCACGCCGGGAGCCCATTTCTGAACCCCAACTCCAACTCCTGTTTTTAGTACCTCCGTCACCAGTTTCTCATTGTAAAACTGCTCCGCCCCCACCGGCCATGTCACCATTGGAACTCCCGCAGCCACTCCTTCCAACGTTGAATTCCATCCACAGTGTGTCACAAACCCACCTACTGATGGGTGGTCCAATATCAAAACTTGCGGTGCCCATCCTCTTATGATCAGCCCTGTTCCTTCCATCCTCTCTTCGTACCCTTCGGGTAGCCAATTTTGCTCCTCTTCCTCTTCTTTCCCTTTCCTGACAACCCAGATGAATTTTTTCCCAGATGCCTCCAGTCCAATTGCAATCTCCTTCAACTGAGCAGAGTTGAATTTGGCCAAACTTCCAAAACAGATATACACAACCGAGTCGGGTTTCTGGGAATCGAGCCATTTCAAGCACTCATGCTCGTCAATGGCTGATTCTCTTCCTCTTTGCGTGATTTCTTGAGTTTTTTTGTTTGTTAATGAAAGTGGGCCAATTGGCCACGCTTTTCTTCCCAAGACATCTTTGTAACAATCTACATACTCTGCTTCCAGCTCGTAGAAACTGTTGACAACAACACCATAGCAACACGATTCCGATTCTTTAACTTTGGTGATAAGTTTGCTGAATTCATTCTCGGTATTCTCCCGAACGAAGATGGGGAGTTTCATTTTGGTTAGCTTAATATCTCCGGGGAGATAAGGAATGGGAAAAGGTTCTGTATCGGACGAAACATGCTTGTAAGGCTCGTGAAGTCTCATGAACTCGGAAGCACAAAGAGAGAAACAACTCGTGCCATGGAAAATCAGCCTGGGAATCCCAATTCTGTCAGCAACATCGTTGGTCCAAGGGAAGAACATGTCGGAGATGAGGCAATCGGGGCGATTGTTCTGGAGAGCTTCCTCAAAAGGTGGTTGAAGCAAGGAGACAGCTCGGAAGAAATTGGGGAGAAAATCCATGGATGGAATGGAGTCGGCATTTTCACAACCTTCTGGTAAACCAGCTTCAGCAGAAGGGAACTTGAGGATGAGAAGTTGGATGAGAGAATCGGCGGAATAATTGTGAAGTGATTTGGAGAAGGAGATGGAATTGAGAGGGGTTGTGACGATGGTGATCTTGATGCCACGAGATGCAAATAACTTGGCCATGTCCACCATGGGAATCATATGACCATGAGCCATGAATGGAAACATGAAGATGTGAAGCTGTCGGTCTTCGCTGCCCATAGTGGATAATGAACTATATTATTATTGCAAGAGATGTATGAAGTTGCAGATGGAAGATTGAATTAATTTCGTTGGAGAAGATGAAGACGATGAAGAGGAGAGTGAGGGATTTGGGAGAATTTATAAGAGAAGAAGCCAAGTATGAATGGAATTCTTCCATGTCTTAGTTTAAATAAAACCCAATAAAAAATGTAGAAAGGTTGTCTTGATTTGGTTAATTAGAAAAATGAATAGCTTTAGTTGCTGTCTCTCATACTC

mRNA sequence

TCCAAATCTATTTCTAGAATTTAAGCACATCAATCAAGAATGTCAACAAATTAGGTGCAATCAAAGACAGACTTATCATTATCTTTATGGACTTCTTTTCTTAGGCTTTTATTAGATATAATTATTGAGTATGAAACTCTTCCAATGGTCTTTTTATTTAGGTTAGTAGAATTCAGATATTAGGTTTGGAAAAATGTGTTTAGTCATTCAAGAATTTTAATTTTAAAAAATTGTTTAAAGAATCGGTGGAATTAAATATTACATTAGATCTTTAACCATTATTAGGACATCCTCTCATGTTCAAAACCATTTGAAATTTAAAAATTCATAGATTATTGTGTATTATAAAAAATAAAAAATAAAAACTAAATACATTGATCATACACATTTGAAATAAATAATAAAACCTCAAAAAGCTAAACCAAATATTTAGTAGATGACTTTGAGTTGGAACATGAACTCACACACACCCATCCAAGAGAAGTCCCACATGAACTAATTTATTAGTTGGAAAAGTGAATCTAAAATGCCAACGATTTCAACTCCTCAATTAAAGAATCCAAATTTGAATATGAAGATCCTTCTTCTCCAACTGCCCACTTTGCCTTCTTTGCAAATTCTGTTGCTCTCTTTCTCATCTCTTCTCCTTCTTTCTCCATTATTCTTCTAATTGCCTTCTCCACAGCTTCACTTTCTATGAAATCTCCCACGCCGGGAGCCCATTTCTGAACCCCAACTCCAACTCCTGTTTTTAGTACCTCCGTCACCAGTTTCTCATTGTAAAACTGCTCCGCCCCCACCGGCCATGTCACCATTGGAACTCCCGCAGCCACTCCTTCCAACGTTGAATTCCATCCACAGTGTGTCACAAACCCACCTACTGATGGGTGGTCCAATATCAAAACTTGCGGTGCCCATCCTCTTATGATCAGCCCTGTTCCTTCCATCCTCTCTTCGTACCCTTCGGGTAGCCAATTTTGCTCCTCTTCCTCTTCTTTCCCTTTCCTGACAACCCAGATGAATTTTTTCCCAGATGCCTCCAGTCCAATTGCAATCTCCTTCAACTGAGCAGAGTTGAATTTGGCCAAACTTCCAAAACAGATATACACAACCGAGTCGGGTTTCTGGGAATCGAGCCATTTCAAGCACTCATGCTCGTCAATGGCTGATTCTCTTCCTCTTTGCGTGATTTCTTGAGTTTTTTTGTTTGTTAATGAAAGTGGGCCAATTGGCCACGCTTTTCTTCCCAAGACATCTTTGTAACAATCTACATACTCTGCTTCCAGCTCGTAGAAACTGTTGACAACAACACCATAGCAACACGATTCCGATTCTTTAACTTTGGTGATAAGTTTGCTGAATTCATTCTCGGTATTCTCCCGAACGAAGATGGGGAGTTTCATTTTGGTTAGCTTAATATCTCCGGGGAGATAAGGAATGGGAAAAGGTTCTGTATCGGACGAAACATGCTTGTAAGGCTCGTGAAGTCTCATGAACTCGGAAGCACAAAGAGAGAAACAACTCGTGCCATGGAAAATCAGCCTGGGAATCCCAATTCTGTCAGCAACATCGTTGGTCCAAGGGAAGAACATGTCGGAGATGAGGCAATCGGGGCGATTGTTCTGGAGAGCTTCCTCAAAAGGTGGTTGAAGCAAGGAGACAGCTCGGAAGAAATTGGGGAGAAAATCCATGGATGGAATGGAGTCGGCATTTTCACAACCTTCTGGTAAACCAGCTTCAGCAGAAGGGAACTTGAGGATGAGAAGTTGGATGAGAGAATCGGCGGAATAATTGTGAAGTGATTTGGAGAAGGAGATGGAATTGAGAGGGGTTGTGACGATGGTGATCTTGATGCCACGAGATGCAAATAACTTGGCCATGTCCACCATGGGAATCATATGACCATGAGCCATGAATGGAAACATGAAGATGTGAAGCTGTCGGTCTTCGCTGCCCATAGTGGATAATGAACTATATTATTATTGCAAGAGATGTATGAAGTTGCAGATGGAAGATTGAATTAATTTCGTTGGAGAAGATGAAGACGATGAAGAGGAGAGTGAGGGATTTGGGAGAATTTATAAGAGAAGAAGCCAAGTATGAATGGAATTCTTCCATGTCTTAGTTTAAATAAAACCCAATAAAAAATGTAGAAAGGTTGTCTTGATTTGGTTAATTAGAAAAATGAATAGCTTTAGTTGCTGTCTCTCATACTC

Coding sequence (CDS)

ATGCTTGTAAGGCTCGTGAAGTCTCATGAACTCGGAAGCACAAAGAGAGAAACAACTCGTGCCATGGAAAATCAGCCTGGGAATCCCAATTCTGTCAGCAACATCGTTGGTCCAAGGGAAGAACATGTCGGAGATGAGGCAATCGGGGCGATTGTTCTGGAGAGCTTCCTCAAAAGGTGGTTGAAGCAAGGAGACAGCTCGGAAGAAATTGGGGAGAAAATCCATGGATGGAATGGAGTCGGCATTTTCACAACCTTCTGGTAA

Protein sequence

MLVRLVKSHELGSTKRETTRAMENQPGNPNSVSNIVGPREEHVGDEAIGAIVLESFLKRWLKQGDSSEEIGEKIHGWNGVGIFTTFW

Homology

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BLAST of Cmc01g0003521 vs. NCBI nr
Match: KAE8645859.1 (hypothetical protein Csa_017252, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1   MLVRLVKSHELGSTKRETTRAMENQPGNPNSVSNIVGPREEHVGDEAIGAIVLESFLKRW 60
           ++VRLV  HEL  T  E T  ++ +PGNP    +IVGPR++H+G   +GA+   S LK  
Sbjct: 26  IVVRLVNPHELQGTGGEKTSTVKIKPGNPQFDRSIVGPRKKHIGYNTMGAMFRNSLLKWG 85

Query: 61  LKQGDSSEEIGEKIHGWNGVGIFTTFW 88
           L+Q  S +E G        V IFT  W
Sbjct: 86  LEQRHSRDEFGNHGRTNKEVKIFTAIW 112

The following BLAST results are available for this feature:

BLAST of Cmc01g0003521 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645859.1	1.6e-07	41.38	hypothetical protein Csa_017252, partial [Cucumis sativus]	[more]

BLAST of Cmc01g0003521 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0003521 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0003521 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0003521.1	Cmc01g0003521.1	mRNA