CmaCh20G008560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G008560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	organ-specific protein P4-like
Location	Cma_Chr20: 4121792 .. 4122284 (-)
RNA-Seq Expression	CmaCh20G008560
Synteny	CmaCh20G008560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAACATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGGTAAGCTTTCGATCGATTTGATCGGTTTAGATTTATAAATATTACGATCAAAGTTAAAAAAATTTGATTTTGATTTTGTTAGTCGAAGAACAAACAGTTATCGATCGATGGTTTTCATTTTCGTTTTCGTTACGAAATTTGACGAGTTTTTTTATAATTTAGTTCGTAGATGTAAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAGATTCCAGAGATGCTTAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCAAGGCGTAATATTGATATCAAATTCAACCCCACCGTTGCCAATTCAGCCCCATGA

mRNA sequence

GTCCAACATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGTTCGTAGATGTAAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAGATTCCAGAGATGCTTAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCAAGGCGTAATATTGATATCAAATTCAACCCCACCGTTGCCAATTCAGCCCCATGA

Coding sequence (CDS)

ATGAAGCTGTCTCTTGCTTTCTTTCTTCTCCTTTCTCTTGTTCTGTTCGTAGATGTAAGCCATGGAAGCAGGAAAGATCAAGGGAAGTATTGGAAAAAGATGATGAAAAATGAAGAGATTCCAGAGATGCTTAAAGAGCTGTTGTTTGATGATTCAATGGTGGAGAATCAAAAGCAACGGTTTATGAACAACTTTGATCCTCATCCAAATGCTATAATATACCATGCTCATGCTCATGCTCATGCTCATGGCCATGGGGCTGCTACTCCAAGGCGTAATATTGATATCAAATTCAACCCCACCGTTGCCAATTCAGCCCCATGA

Protein sequence

MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP

Homology

[Close]

BLAST of CmaCh20G008560 vs. ExPASy Swiss-Prot
Match: P17771 (Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.2e-05
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 8   FLLLSLVLFVDVSH-GSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMNN-- 67
           F LL L LF+ V++  SRKD G+YWK +MK++++PE ++ LL D S ++N K     N  
Sbjct: 8   FALLPLFLFLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTHAKENKG 67

Query: 68  ----FDPHPNAIIY-----HAHAHAHAHGHGAATP 91
               F+P PNA  Y     HA+ +  A G     P
Sbjct: 68  AIGEFEPCPNASAYGDNEIHANENKGAIGEFETRP 101

[Close]

BLAST of CmaCh20G008560 vs. ExPASy Swiss-Prot
Match: P17772 (Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.2e-05
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           M L  AF LL   +L +  +  SRKD G+YWK +MK++++PE ++ LL D S ++N K  
Sbjct: 1   MSLRSAFALLPLFLLLIVANVESRKDVGEYWKLVMKDQDMPEEIQGLL-DASNIKNSKTH 60

Query: 61  FMNN------FDPHPNAIIY---HAHAHAHAHGHGAATPRRN 94
              N      F+P P A  Y     HA  +    G   PR N
Sbjct: 61  AKENMGAIGEFEPRPYASAYGDNEIHAKENMGAIGEFEPRPN 101

[Close]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 107

[Close]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLL+SLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIY  HAHAHAHGHGAATP RNIDIK NPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIY--HAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL
Match: A0A6J1D5L4 (organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.2e-24
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
          MKLS+AFFLLLSL+LF +  +G RKDQG+YWKK+MK EEIPE+LKELL+DDS V  Q +R
Sbjct: 1  MKLSVAFFLLLSLLLFAEGGYG-RKDQGEYWKKIMKEEEIPEVLKELLYDDS-VGGQNER 60

Query: 61 FMNNFDPHPNAIIYHAHAHAHAHGH 86
          FM+NFDPHPNAIIYH+H+H  A GH
Sbjct: 61 FMSNFDPHPNAIIYHSHSHGAAAGH 83

[Close]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL
Match: A0A0A0LP62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFD----DSMVE 60
          MKLS+AFF LLSL+L  D++HG SRK++G+YWKK+MK E +PEMLKELL +     SMVE
Sbjct: 1  MKLSIAFFFLLSLLLLGDLTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSSMVE 60

Query: 61 -----NQKQRFMNNFDPHPNAIIYHAHAHAH 82
                QK+ F+ NFDPHPNAIIYHAHAHAH
Sbjct: 61 YNNNKQQKEHFLTNFDPHPNAIIYHAHAHAH 91

[Close]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL
Match: A0A6J1L3N5 (organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMV---ENQ 60
          MKLS AFF LLSL+L  +VSH +RK++G+YWKK+MK+E IPEMLKELLFDD  +   + Q
Sbjct: 1  MKLSAAFF-LLSLLLLANVSH-ARKEKGEYWKKVMKDEAIPEMLKELLFDDDSLVSSDAQ 60

Query: 61 KQRFMNNFDPHPNAIIYHAHAHAHAH-GH 86
           +RFMNNFD HPNAIIYH+H   H H GH
Sbjct: 61 SERFMNNFDTHPNAIIYHSHGATHDHPGH 87

[Close]

BLAST of CmaCh20G008560 vs. NCBI nr
Match: XP_022986644.1 (organ-specific protein S2-like [Cucurbita maxima])

HSP 1 Score: 217.6 bits (553), Expect = 5.1e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 107

[Close]

BLAST of CmaCh20G008560 vs. NCBI nr
Match: KAG6571127.1 (hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010938.1 hypothetical protein SDJN02_27736, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 103/107 (96.26%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIY  HAHAHAHGHGAATP RNIDIK NPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIY--HAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of CmaCh20G008560 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLL+SLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLISLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIY  HAHAHAHGHGAATP RNIDIK NPTVANSAP
Sbjct: 61  FMNNFDPHPNAIIY--HAHAHAHGHGAATPTRNIDIKSNPTVANSAP 105

[Close]

BLAST of CmaCh20G008560 vs. NCBI nr
Match: XP_023513271.1 (organ-specific protein S2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-48
Identity = 103/107 (96.26%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
           MKLSLAFFLLLSLVLFVDVS GSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR
Sbjct: 1   MKLSLAFFLLLSLVLFVDVSDGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60

Query: 61  FMNNFDPHPNAIIYHAHAHAHAHGHGAATPRRNIDIKFNPTVANSAP 108
           FMNNFDPHPNAIIY  HAHAHAHGHGAATPRRNIDIKFNPT ANSAP
Sbjct: 61  FMNNFDPHPNAIIY--HAHAHAHGHGAATPRRNIDIKFNPTGANSAP 105

[Close]

BLAST of CmaCh20G008560 vs. NCBI nr
Match: XP_022148637.1 (organ-specific protein P4 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MKLSLAFFLLLSLVLFVDVSHGSRKDQGKYWKKMMKNEEIPEMLKELLFDDSMVENQKQR 60
          MKLS+AFFLLLSL+LF +  +G RKDQG+YWKK+MK EEIPE+LKELL+DDS V  Q +R
Sbjct: 1  MKLSVAFFLLLSLLLFAEGGYG-RKDQGEYWKKIMKEEEIPEVLKELLYDDS-VGGQNER 60

Query: 61 FMNNFDPHPNAIIYHAHAHAHAHGH 86
          FM+NFDPHPNAIIYH+H+H  A GH
Sbjct: 61 FMSNFDPHPNAIIYHSHSHGAAAGH 83

[Close]

BLAST of CmaCh20G008560 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 5  LAFFLLLSLVLFVDVSHGSRKDQG-KYWKKMMKNEEIPEMLKELLFDDSMVENQKQRFMN 64
          + F +LLS +LFV++S G       +YWKKMMKNE +PE +KELL  ++     ++RF+ 
Sbjct: 9  VVFIVLLSFLLFVNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL--NNPFRTAQERFIQ 68

Query: 65 NFDPHPNAIIYH 76
          NFD     IIYH
Sbjct: 69 NFDTKSVVIIYH 78

The following BLAST results are available for this feature:

BLAST of CmaCh20G008560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P17771	9.2e-05	38.95	Organ-specific protein P4 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P17772	9.2e-05	36.27	Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of CmaCh20G008560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGL9	2.5e-53	100.00	organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 ...	[more]
A0A6J1FYV4	1.1e-48	95.33	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=...	[more]
A0A6J1D5L4	9.2e-24	71.76	organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV...	[more]
A0A0A0LP62	3.3e-21	64.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1	[more]
A0A6J1L3N5	3.1e-19	65.17	organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 ...	[more]

BLAST of CmaCh20G008560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986644.1	5.1e-53	100.00	organ-specific protein S2-like [Cucurbita maxima]	[more]
KAG6571127.1	1.3e-48	96.26	hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944721.1	2.2e-48	95.33	organ-specific protein P4-like [Cucurbita moschata]	[more]
XP_023513271.1	2.2e-48	96.26	organ-specific protein S2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022148637.1	1.9e-23	71.76	organ-specific protein P4 [Momordica charantia]	[more]

BLAST of CmaCh20G008560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49310.1	4.8e-09	45.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 25..76 e-value: 3.8E-6 score: 27.6
None	No IPR available	PANTHER	PTHR33731:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33731	PROTEIN, PUTATIVE-RELATED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G008560.1	CmaCh20G008560.1	mRNA