CmaCh20G008000 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGCAAGAAGGCACGAGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGCGGCTGTCGGCGATTCATCGTCCGTGCGTCCTTCTTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTCTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTATCAAGGATTTACAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGCAAGAAGGCACGAGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGCGGCTGTCGGCGATTCATCGTCCGTGCGTCCTTCTTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTCTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTATCAAGGATTTACAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGCAAGAAGGCACGAGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGCGGCTGTCGGCGATTCATCGTCCGTGCGTCCTTCTTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTCTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTATCAAGGATTTACAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSIKDLQRRCDKDVRKNLEYLGESRPLLYGFADS Homology
BLAST of CmaCh20G008000 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11 Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11 Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.5e-10 Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 7.7e-10 Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy TrEMBL
Match: A0A6J1JBR0 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111484316 PE=3 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 3.8e-76 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy TrEMBL
Match: A0A6J1FXH8 (auxin-responsive protein SAUR50-like OS=Cucurbita moschata OX=3662 GN=LOC111448496 PE=3 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 6.4e-76 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy TrEMBL
Match: A0A0A0LM48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G257100 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 7.6e-61 Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy TrEMBL
Match: A0A5A7TQK8 (Auxin-responsive protein SAUR64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00010 PE=3 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60 Identity = 119/149 (79.87%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of CmaCh20G008000 vs. ExPASy TrEMBL
Match: A0A1S3C5H3 (auxin-responsive protein SAUR64 OS=Cucumis melo OX=3656 GN=LOC103497270 PE=3 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60 Identity = 119/149 (79.87%), Postives = 136/149 (91.28%), Query Frame = 0
BLAST of CmaCh20G008000 vs. NCBI nr
Match: XP_022986631.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima]) HSP 1 Score: 293.9 bits (751), Expect = 7.8e-76 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CmaCh20G008000 vs. NCBI nr
Match: XP_022943918.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata] >KAG6571069.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010881.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75 Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CmaCh20G008000 vs. NCBI nr
Match: XP_023512602.1 (auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74 Identity = 146/148 (98.65%), Postives = 147/148 (99.32%), Query Frame = 0
BLAST of CmaCh20G008000 vs. NCBI nr
Match: XP_038902037.1 (auxin-responsive protein SAUR71-like [Benincasa hispida]) HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64 Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 0
BLAST of CmaCh20G008000 vs. NCBI nr
Match: XP_004147056.1 (auxin-induced protein X10A [Cucumis sativus]) HSP 1 Score: 243.0 bits (619), Expect = 1.6e-60 Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0
BLAST of CmaCh20G008000 vs. TAIR 10
Match: AT1G19840.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 169.1 bits (427), Expect = 2.7e-42 Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0
BLAST of CmaCh20G008000 vs. TAIR 10
Match: AT1G75590.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 156.4 bits (394), Expect = 1.8e-38 Identity = 81/150 (54.00%), Postives = 105/150 (70.00%), Query Frame = 0
BLAST of CmaCh20G008000 vs. TAIR 10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35 Identity = 78/148 (52.70%), Postives = 103/148 (69.59%), Query Frame = 0
BLAST of CmaCh20G008000 vs. TAIR 10
Match: AT4G34750.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 144.4 bits (363), Expect = 7.1e-35 Identity = 78/149 (52.35%), Postives = 105/149 (70.47%), Query Frame = 0
BLAST of CmaCh20G008000 vs. TAIR 10
Match: AT4G34750.2 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 144.4 bits (363), Expect = 7.1e-35 Identity = 78/149 (52.35%), Postives = 105/149 (70.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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