CmaCh20G004420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G004420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 2096724 .. 2101730 (+)
RNA-Seq ExpressionCmaCh20G004420
SyntenyCmaCh20G004420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTGAACTTGGTTTTGTTTTCCTATTTAATTCCGTGCACTATGAAAACTGAATCAACTGAAACCTTCAATTGCTTGATTTTATTTTTTTTTTAAACTAGTAAATGCAGGGAAATGCCCATCGAAACGAGAAGACATCATCCAGTGTCAAAGCTTTCGCTTGGGGTTAATCAACCCTCTGGCCTTCAAGAAAGCCCCTGAAACGTATACAGAGAAGTAGTGATCAAAACGGAGGGGACATCACCCAGTGCTATTGCTTCCGTTCAAGCGCTCAATCAATCTGCTAGCCCCAAGAAGGTCCGCAAAACTAAATGCTAGCAGTTATCTATTCTTCGGTTTTATTTATCTTGATTGATACCATTTAGTCTTGTTTATAATACTTGGGTATGCATATCGCACCTATTAATCTCAAATGATTTTTTTTTTTGATATCGAGTATGAAAAAGTTATCCCTTTTTTTCCTTTCAAAGAACTCATGAGGGTGTTTGGGTAAAGTTAGATATGCATATTTGGACTAATTTTATTAGTCTATCACTTGGTTTTAGAATAGTTGATGCTGGAGAAATCGTAGGTCATTTACTATTTTAAAGGTTATAGATGTTTTATGAACTTGATTGTTTCTAGTTTTCTGGACCTCCATTTAAATTAGTTGTTAAGTGAGAGGGGTGTGTAGTGTAAACGATCATTAAAGAACCTTTTTAGAAAGTCAATGTCTTATTCATTGAGTAAAGCTCCAGTTGGCATGGTCAAAGTCCATTCAACAGCAAGTAACCTACTCTTATTCACTGAGCTTAGTTAATACGTGACTATAAATATTCGCCATGATGAGGACTCAAGCTTATATCATTTATCACCAAAGAATTTCAACTTGCGTTTTCTAAACCAATTGGGATTGTGTCCATTTCAGCATCAAAACTATATTGCAAGTTCCATTCATATTCACCCTCTTCCCATTTGGGTCTGTTAGTTCAAAGGAATGCCGTAGGGTTCAAGTCTACTTTAACTATTTCATTTAGGATTAGGAGCACAACATGTCTTTCTTTTTATCTTTTTTCTTGGTATGATTTTTATTTTAGGAAGACCATAATATTGTAGTTTTTTAGTAAAATTGGAACGAATAGTATAATTTTGAGGAGTGTTTACTTTAATAAATTTGAAAGTTACCATCATTTGTTTCTTGAAGGCACGTAAAACCCATATCTTTTGGAAGAAAAATCTAGTCAAGTTGGCCAGTTATTTCTTTTTTCTGTCTGGAAAGATGTGAAATCCATATCGGTTGGGAAGAGGAACAAAACCTTTCTTATGAATGTGTGGAAGTCTCTTTCTAGTAGACGCGTTTTAAAACTGTGAAGTTGATAGCGATACGTAATGGGCCAAAATAAGAAATATCTGCTAGTAGTGGGCTTGGGCTATTACACATAGTATGAGCTGGACACCATGGTATGCCAGCGAGGACGCTAAGGCCCCCAAAGAGGTGGATTGTAAGATCTCACATTGGTTGGAGAGTGGAGCGAAACATTCCTTATAAGGGTATGAAAATCTCTCTTTAGTAGACAACATTTTAAAATTGTGAGGTTAACGACGATACGTAACGAGTCAAATGAGTCAAACGAGTCAAATCTGACAATTGCTAGCAGGCTTGAGTTGAGCTTTAGTTGTTACCTGGATGATTTTACTTTTACTTTTATAGCAATAGTCAAAAGTTTTCTGCCATTTATGTTAGTATACGCATATCTTAATTACCATAATTTGGAAGTAGACTTGGTTAAAGGCATACATAGCTCCATTCTTGCAGTTTTTAAAAATCCTTTTGTAGCAGAAGAGGCCATGGCTAAGCCTGAGAAGTTGGGGCTCATTCTCAGTGTAATGAACCAACCAATTGACCCACCAGGGGATCCAAACTGTAGGAGGCTTGGAATTCCATGAATCTTCCCCACTGCTTGTAAAGCCGCAAAGCACTTCATTGGTGGCAACACACATGTGAGTAACTATATGCCTATGAACAACTAATAAATCAGCCAATTTATGTTATTTTAATTTAGAACTACATGCATAGTTAGAAGGACAACCAGTACGAATTAAGAACCTTTTCTAAAAGTGGCCGGAACTGCTTTTAAGTATTTTTAAAGTACTTCTAATTACATAAAAAGCTTTTTCTTTTTAGGTTAAATTAATAAAAGTATTTATTGTTTCAAAAATACCTTCCAATTAACACCATTTTACCTTTTGTAAAAAAAATTTTAAAAAAATTCTTATGGACGAAAACTATCTAGCGATATTTTATAGATTATCTATTAATGTTTTAATGTTATTTTAGAAAGTTCACAAGTACTTTTGAAACGTAGGAATAATGGTAACGTACTTTTTACACCATTTTGAAAGTTCTAAGGTATTTTTGAAAAGTATTAATGGTTTCTATTTAAAACTTTAGGGATATTTTTATTAATTTAGTTTTTTTTTTTTAAAAAAAAAAAAATATTCTATTGCATGAATGGGTGGAAAGGAATGGTGTAGTGAGTAAGCTAGAGCTTAGATTCTGAAGACTGCGACGGTCACCAAACTAAGTTGCAATCCATTTTGTAGTGACAGTGATTGAAATTCTCCACCTTTTTGACTTATCTTTAGCCCTTATCCCCCGAGCACTCAAACAGAGCTCGAATCAGTTCCAAAAATGGCTCAATCTTTACACACCAATCAATGTCAAATCCTTTTCACAAAAAGATGAAAAGGAGTTCCATTATTGATTTTTATTACAAAAAAACAAAGACCCTTTTTATTTACATCCCAAATACGAAACTGTCCATACATCTCCAGAAAAATAGAAAAACAGAGAACCTCAAATTAGCAAGTGAATGGCAGGTCAAAATGGAAGAGGCCTATTGGAACTAGAATTACATTATTATTGTTGTTTTTGTGTGAGATTTCATGGAATTAGGTTTGCAGAAGAATATGCATCAATGAAATACTTTATCCAATTTTCACCACCATTATTTGCCTCTTCCTCTTCTTCTTCTTCCTTTTGCCCATGACTCCACTTCATTGGAAAATTCTTCGCAACGTTGTCGTTGTACCTTGCGAATCGTCCTCTGATCCGCGGTCGACTATCGGCCAGCGATTTCCTACAAGCATACTTTAACCACACTCAAATATTAGTTTGAATTACTTTTAACAACACCCATGTAATCTAGGGATATAAATATAGATAACTTTCACCACCATTTAGGTTAAGTGGGCTGGTTTTAGCAAATATTTTTATGGTATCATAACCCATCTAATTTAGCTATCCTGATAATTTCTTCACCGGCTCCCAAATCTTCTTCTCATCTACTTCCTAACACTCTATAATCCTTTTGATTATCCTCGAGCTTTCTTCATCAAATTCATCAAATTATCTTATATGGAAAAACCAACTTCTCCTCATAGAGAGTCGAGAGATGCTGGACTACGTTGATGGAACTCTAGTTTCGCCTCCTCACTTTGATGAACCAGCAACCTCCTCAACACTCATTATGGTGTGGAAAGTAGCCCATCAACGATTTTTTTGTCTCTTGCTCTCCTCTCTCACCGAGGAAGCCATTGCTGTTGTGGTTGGTCTCTTCATTGCTCGTGACATTTGGTTCACGTTAGAGACTATGTTTAGCCATCATTTGAAAGTACACTTGTTCCTTCGTGGACTCAATATCGATTTCTCAACTTTTTCTACTGCTCAAATGACTATGATACCACGAGAATATTTGGTAAAAGTTCTCTATTTATCATTTCCAGAATAAAAGTAAATGGAGAGAGCACTAAATGGATTTAGGATATTAGTCTATGATCAAAGGTCAAATATGATACATATGACAAAACGCAAGATATTAGCCTATAATCAAGACGAGAGGATTTTTTAACATCTCATTTCTTGGACTACTTTTAGGATGATTTTAAATTATGGCTTTTCCATTGTTACCTTCCAAATATTGAAACGACCTTTTAACCTAAAGCGAGAGAGAGATCGATGTGACAAAAGCAAAAAAATAAGGATAATTATAATGTGAAAGTAACAACAATATTAGCTTATAGTTGTTGGCATATAGAATCTAGGAAACAATATGTAGGCAGAATAATATTGTGTAGAATTAATCCATAATTTCAAGTAGGATAGATAAAGAATAGGAGAGAGAAGACTTTACCTTGATCTTCTTGTTGAAGTTCCTCTGGTTTCTTTTGCTCTTATATCTTTCAATCCTTTCCTTCTTCTCTTCTGGACTGTATCTGCAAGCTCTGCTTAGCCCTTCAATGGTGATGCTACTTTCACATGAAACTGGACTCTCTGCTCTCTGCTTATTCCTTTGCCATCCCCATTCCTGAACTCATTATTCAAACCCCATTTAATAATATCATATATATTTATATATATTTTTAATCATCCTTTGCATGGAGGTTACCTATGATTATAGCAGCTTAGAACATGTTTGGAATGGTAAAAACGCAACATTTTGAACGAACTAAATCGAAATTGTTGGAGGTGATCTTTGCATTTTTCAGTATAATGATGTGAATCTCTGTAATAGTATGATATCATACGCTTTAAACATAAGCTCTCAAAATGCTTAGTATCAAGATAGTGTCCTTATCATTAATCATTCATTTTTATAAGTCTCACCTTAAAATCACCGGCTTGGAAGAGCGGCCGGCTGACAAGACTCTCAGCTGTGGGTGGCGGTGTCGATGACGACGATGAAGAAAAGGTGCGGTGGAGAAGATTATTGGTTGTTCGGAGAGAAGGGTTAAGGAGGCTAAAAGATTGGTCTAATAAAAATCTATTAGTTGGTCGACGAAATGTTAGGGGTTGCGGCGGAGAAGTCGCTGAACCGTCGCCACAACTGTCGGAAACTTCAGATTTCCAAAGCTTGACAGAGGAATCGGGCAACCAGTCAAAATCAACGCTTGCGAGGTCGGCGGAGGAATGCGAGACGGCGGAAAGAAACGGGGAGAAGGCCATGGAGGACGGCGGCGCGTGA

mRNA sequence

ATGGTGATTGAACTTGTAAATGCAGGGAAATGCCCATCGAAACGAGAAGACATCATCCAGTGTCAAAGCTTTCGCTTGGGGTTAATCAACCCTCTGGCCTTCAAGAAAGCCCCTGAAACAGAAGTAGTGATCAAAACGGAGGGGACATCACCCAGTGCTATTGCTTCCGTTCAAGCGCTCAATCAATCTGCTAGCCCCAAGAAGAGCGGCCGGCTGACAAGACTCTCAGCTGTGGGTGGCGGTGTCGATGACGACGATGAAGAAAAGGTGCGGTGGAGAAGATTATTGGTTGTTCGGAGAGAAGGGTTAAGGAGGCTAAAAGATTGGTCTAATAAAAATCTATTAGTTGGTCGACGAAATGTTAGGGGTTGCGGCGGAGAAGTCGCTGAACCGTCGCCACAACTGTCGGAAACTTCAGATTTCCAAAGCTTGACAGAGGAATCGGGCAACCAGTCAAAATCAACGCTTGCGAGGTCGGCGGAGGAATGCGAGACGGCGGAAAGAAACGGGGAGAAGGCCATGGAGGACGGCGGCGCGTGA

Coding sequence (CDS)

ATGGTGATTGAACTTGTAAATGCAGGGAAATGCCCATCGAAACGAGAAGACATCATCCAGTGTCAAAGCTTTCGCTTGGGGTTAATCAACCCTCTGGCCTTCAAGAAAGCCCCTGAAACAGAAGTAGTGATCAAAACGGAGGGGACATCACCCAGTGCTATTGCTTCCGTTCAAGCGCTCAATCAATCTGCTAGCCCCAAGAAGAGCGGCCGGCTGACAAGACTCTCAGCTGTGGGTGGCGGTGTCGATGACGACGATGAAGAAAAGGTGCGGTGGAGAAGATTATTGGTTGTTCGGAGAGAAGGGTTAAGGAGGCTAAAAGATTGGTCTAATAAAAATCTATTAGTTGGTCGACGAAATGTTAGGGGTTGCGGCGGAGAAGTCGCTGAACCGTCGCCACAACTGTCGGAAACTTCAGATTTCCAAAGCTTGACAGAGGAATCGGGCAACCAGTCAAAATCAACGCTTGCGAGGTCGGCGGAGGAATGCGAGACGGCGGAAAGAAACGGGGAGAAGGCCATGGAGGACGGCGGCGCGTGA

Protein sequence

MVIELVNAGKCPSKREDIIQCQSFRLGLINPLAFKKAPETEVVIKTEGTSPSAIASVQALNQSASPKKSGRLTRLSAVGGGVDDDDEEKVRWRRLLVVRREGLRRLKDWSNKNLLVGRRNVRGCGGEVAEPSPQLSETSDFQSLTEESGNQSKSTLARSAEECETAERNGEKAMEDGGA
Homology
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BLAST of CmaCh20G004420 vs. NCBI nr
Match: KAG7010585.1 (hypothetical protein SDJN02_27379, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-07
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 3  IELVNAGKCPSKREDIIQCQSFRLGLINPLAFKKAPETEVVIKTEGTSPSAIASVQALNQ 62
          ++ VNAGKCPSKR          LG+  P   +++P  EVVIKTE TSPSAIASVQALNQ
Sbjct: 17 LKRVNAGKCPSKRRRHHPVSKLSLGVNQPSGLQESP--EVVIKTEETSPSAIASVQALNQ 76

Query: 63 SAS 66
          SAS
Sbjct: 77 SAS 77

The following BLAST results are available for this feature:
BLAST of CmaCh20G004420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G004420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G004420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010585.12.4e-0760.32hypothetical protein SDJN02_27379, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh20G004420 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 156..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G004420.1CmaCh20G004420.1mRNA