CmaCh20G004370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G004370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nudix hydrolase 9
Location	Cma_Chr20: 2067370 .. 2069710 (+)
RNA-Seq Expression	CmaCh20G004370
Synteny	CmaCh20G004370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTACGTAATTTCAGTGTTCCATTTTCATTTCTATTGTTTTTAATGGGTAATCTTTTGGTTTGTTGTAGTTCTGCCGTATGAATATGGCCATTGTTTTCAAGCAAGCTTATCACTGGGATTCATTATCTTGTCCACTTTTTTTGTTTACTTTATTACACAAAATATCCAATTTGTCGAAGCAATATATATCTATATTTTGTTGCCTCCCTTGAAAGTCTTTGCAATGCCAGGGCATCTGTTTTCCAATAACGAAATGTCTAATATCTGCAGCCCCAAGAGCTTGGAATGGCATACCATGATGACGTGAAAGGTTTTGCAGATTCCAATACCATTAACAGAAGGCTTTCGTGGAAGATGTTTGACAGAATTATCCGAGAAGTTGTTGAACATATTGGAGTACAAACAGAATCCCTTGTATGTTAATCCCTCTGTCTCTCTTGTGGTGAATGGGGTGCTTGGTTGCTTTTATCAACTACGTTATCCATGCACAATTTTTTCGGTCTTATATTTTGAAAATTATCTATTTTTATAACAAAAGCTGGTTATAGGCGATTTCATTAATTTAACTTTTGGGATGGTAATAGCATAGTAACAATCCCCGTCAATTTCTGTAGTTTTCATTATCATTGTTCCAAATTTCAGTCTCTTTCTCAACTCATGTTACTGGTTCAGTTTCAAGCTTAGATGATGTGTTTTGTTTAGAAGGGTCCTAATTTTTTACAATTGTCTTTGTAGAACTCAAGTGGGAGCTATCTGTTGTGATTCCGCAATTCAATTAATTTTGTTTCGCAAGTATATTTATTGTAATATGTTCTTCTTATAACTTATGCAGAACAGCCAAGTCTCGAAGATAATTAAATGTCAGACCAGCTATTTTCTTCTTCATAAAGAGTATTCTGGATTCTGTTAAATTCAGGAACTGTATACCAGTGCGCAAGATGGCTACGAGTCTGCTCAACTTTATACAGTTCCATTGGTTAGTATCAAACATGTGTGTGTGTGTGTGTATCAGTGTATCCATGTCCGAAACCAAAACGTCTGTGAATTATGATGATTGTGCTAGGGAAGTGAATTTAAGAAAAATATTGAATTCACAAGGAAAAATTACAAAACCACCGGGCATTTGAGAGGTCATGTGCTCTCCAAAATGAAGCTAGAGATCCTAATACCAATTACCATCCCCCTTTTCATGCCTACTATTTTCCTTTCATGTGTCCCAATCTCTTCAATTTATTACTGACAGAGTTTACATAAGTAAAAGACTCCCATGCCCTTCTAAACCTTCTATTCTTGCCCGTATGGATGACCCAATATGGCCACCCAGAGTTTCACATTGTTTTCAAGGTGGAAGTTTGGAAACAGCTTGGACTCCCAAGAAGTTTCTTCTCATTATATTTCTTCCAACTGAATAAAGACATCCAGTTCCCCTTTGGAATTTTTGTTGGACGAACATTCAACATTTTTTTTGGTTATTGTTGAATCCAAAATTTGAATCAAGCCGAAGGGAAATGGTGTTGGGCTCTAGTTGATGCCCTTCGTGAGTTACACCTGTGAAACATGGAAAGCAGACTGGTTCCCTATTGTAGAGGGTAGGGCTATCTTTCCAATCGTTTCAATACTAGAAAAGGACCACACTATCTTTTGGTGCCTGCTTTGCCGATCACCTAGTTGATACGCTCTTTTGTCTGTATGGTTATAGTTTAAAGAAAGGCCAGGTTCCCTAGCTAAAAATACACTTCCCTTTGATGTTTGCCTAATGGAACTTCATTACTTGTTGAACTCAAGTTAATTGTACTCGAAAACACTTCAAATTAGCTTCATGGATGTTCTTTGGGACAATAAAAGGTTTAATACTTCCTTATGGGCAGTGGCCTCTAAAGACTTTTGTAATTATCTTATTCTTTTGGAACGGAAACCTTTTTTAAAGTTTGGGGCTCCTTTCTTCTGGATTGTTTTTTATATGGCCTTGTATATCCTTTCATTTTTGTAAGAATAAAAGTTTGGTTTCTATTAAAGAAAAAGGCTTCACATTCGGGCAATAATTGATCAATAGACGGTATAAGTTAAGACTGACAAATGATATATTAAAGGTGAAGAGAGACGCGGTATGGAAGTTGAAACAGAGAAGCTTTGGTGGACACGAAAGAACGACTAGAGATTCAAACGTGAGTTCATCTCGTGGTTTCCTAGAACAAAAGTATGTATGATGTGCTGCAGGGTTTGATATTTCTAATAAACCTTTATTATCTCGTTTTTTGATGCAGACAGTAAAGCAACTAGGATTAATCCAAGCACGAAGGTATGCCTCGTATCTCAATTATCTTTCATGGCATTAA

mRNA sequence

ATGCCCTACCCCCAAGAGCTTGGAATGGCATACCATGATGACGTGAAAGGTTTTGCAGATTCCAATACCATTAACAGAAGGCTTTCGTGGAAGATGTTTGACAGAATTATCCGAGAAGTTGTTGAACATATTGGAGTACAAACAGAATCCCTTAACAGCCAAGAACTGTATACCAGTGCGCAAGATGGCTACGAGTCTGCTCAACTTTATACAGTTCCATTGGTGAAGAGAGACGCGGTATGGAAGTTGAAACAGAGAAGCTTTGGTGGACACGAAAGAACGACTAGAGATTCAAACACAGTAAAGCAACTAGGATTAATCCAAGCACGAAGGTATGCCTCGTATCTCAATTATCTTTCATGGCATTAA

Coding sequence (CDS)

ATGCCCTACCCCCAAGAGCTTGGAATGGCATACCATGATGACGTGAAAGGTTTTGCAGATTCCAATACCATTAACAGAAGGCTTTCGTGGAAGATGTTTGACAGAATTATCCGAGAAGTTGTTGAACATATTGGAGTACAAACAGAATCCCTTAACAGCCAAGAACTGTATACCAGTGCGCAAGATGGCTACGAGTCTGCTCAACTTTATACAGTTCCATTGGTGAAGAGAGACGCGGTATGGAAGTTGAAACAGAGAAGCTTTGGTGGACACGAAAGAACGACTAGAGATTCAAACACAGTAAAGCAACTAGGATTAATCCAAGCACGAAGGTATGCCTCGTATCTCAATTATCTTTCATGGCATTAA

Protein sequence

MPYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNSQELYTSAQDGYESAQLYTVPLVKRDAVWKLKQRSFGGHERTTRDSNTVKQLGLIQARRYASYLNYLSWH

Homology

[Close]

BLAST of CmaCh20G004370 vs. ExPASy Swiss-Prot
Match: Q8VYR2 (Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 33/103 (32.04%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P P  +G+ YH           +N++++ +MFD II EVVE  G+   SL+S        
Sbjct: 170 PEPTAVGIDYHQLENNVQTGEVLNKKVTQEMFDSIICEVVEETGIPASSLSSPLFIGISR 229

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPL 75
                                 Q LY+SA+DG+ES QL+TV L
Sbjct: 230 RELNVRPAMFFYLKCSHHSDDIQRLYSSAEDGFESTQLHTVSL 272

[Close]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL
Match: A0A6J1G501 (nudix hydrolase 9 OS=Cucurbita moschata OX=3662 GN=LOC111450973 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.5e-17
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  HD VKGF DSNTIN ++S +MFD IIREVVE IGV  ESL +        
Sbjct: 166 PEPQELGIECHDHVKGFEDSNTINGKVSQEMFDSIIREVVEEIGVPPESLRNPVFIGISR 225

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 Q+LYTSAQDGYES QLYTVPL+
Sbjct: 226 RELNVRPAAFFFMKCSLESVEIQDLYTSAQDGYESTQLYTVPLI 269

[Close]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL
Match: A0A6J1CXQ6 (nudix hydrolase 9 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015537 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  HD V+GFADSNTIN  +S +MFD IIREVVE IGV  ESL++        
Sbjct: 142 PEPQELGIDSHDRVEGFADSNTINGEISQEMFDSIIREVVEEIGVPAESLSNPVFIGVSR 201

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 QELY SAQDGYES QLYTVPL+
Sbjct: 202 RELNVRPAAFFFMKCNLESLEIQELYKSAQDGYESTQLYTVPLI 245

[Close]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL
Match: A0A6J1CY79 (nudix hydrolase 9 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015537 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  HD V+GFADSNTIN  +S +MFD IIREVVE IGV  ESL++        
Sbjct: 167 PEPQELGIDSHDRVEGFADSNTINGEISQEMFDSIIREVVEEIGVPAESLSNPVFIGVSR 226

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 QELY SAQDGYES QLYTVPL+
Sbjct: 227 RELNVRPAAFFFMKCNLESLEIQELYKSAQDGYESTQLYTVPLI 270

[Close]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL
Match: A0A1S4DXX8 (nudix hydrolase 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 54/105 (51.43%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTE------------ 61
           P PQELG+  HDD KGFAD NTI+ +LS +MF+ IIREVVE IGV  E            
Sbjct: 167 PEPQELGIESHDDAKGFADPNTIDEKLSQEMFNSIIREVVEEIGVPPESLCNPVFIGVSR 226

Query: 62  ------------------SLNSQELYTSAQDGYESAQLYTVPLVK 77
                             SL  Q+LYTSAQDGYES QLYTVPL+K
Sbjct: 227 RELNVRPAAFFFMKCSLDSLEIQKLYTSAQDGYESTQLYTVPLLK 271

[Close]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL
Match: A0A5A7V3T1 (Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002530 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-16
Identity = 54/104 (51.92%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTE------------ 61
           P PQELG+  HDD KGFAD NTI+ +LS +MF+ IIREVVE IGV  E            
Sbjct: 167 PEPQELGIESHDDAKGFADPNTIDEKLSQEMFNSIIREVVEEIGVPPESLCNPVFIGVSR 226

Query: 62  ------------------SLNSQELYTSAQDGYESAQLYTVPLV 76
                             SL  Q+LYTSAQDGYES QLYTVPLV
Sbjct: 227 RELNVRPAAFFFMKCSLDSLEIQKLYTSAQDGYESTQLYTVPLV 270

[Close]

BLAST of CmaCh20G004370 vs. NCBI nr
Match: XP_038901218.1 (nudix hydrolase 9 isoform X3 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  H DVKGFADSNTINR+LS +MFD IIREVVE IGV  ESL+         
Sbjct: 167 PEPQELGIESHGDVKGFADSNTINRKLSQEMFDSIIREVVEEIGVPPESLSDPVFIGISR 226

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLVK 77
                                 Q+ YTSAQDGYES QLYTVP++K
Sbjct: 227 RELNVRPAAFFFINCSLDSVEIQKFYTSAQDGYESTQLYTVPMLK 271

[Close]

BLAST of CmaCh20G004370 vs. NCBI nr
Match: XP_038901216.1 (nudix hydrolase 9 isoform X1 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 55/104 (52.88%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  H DVKGFADSNTINR+LS +MFD IIREVVE IGV  ESL+         
Sbjct: 167 PEPQELGIESHGDVKGFADSNTINRKLSQEMFDSIIREVVEEIGVPPESLSDPVFIGISR 226

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 Q+ YTSAQDGYES QLYTVP++
Sbjct: 227 RELNVRPAAFFFINCSLDSVEIQKFYTSAQDGYESTQLYTVPMI 270

[Close]

BLAST of CmaCh20G004370 vs. NCBI nr
Match: XP_038901217.1 (nudix hydrolase 9 isoform X2 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 55/104 (52.88%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  H DVKGFADSNTINR+LS +MFD IIREVVE IGV  ESL+         
Sbjct: 148 PEPQELGIESHGDVKGFADSNTINRKLSQEMFDSIIREVVEEIGVPPESLSDPVFIGISR 207

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 Q+ YTSAQDGYES QLYTVP++
Sbjct: 208 RELNVRPAAFFFINCSLDSVEIQKFYTSAQDGYESTQLYTVPMI 251

[Close]

BLAST of CmaCh20G004370 vs. NCBI nr
Match: KAG6605492.1 (Nudix hydrolase 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  HD VKGF DSNTIN ++S +MFD IIREVVE IGV  ESL +        
Sbjct: 166 PEPQELGIECHDHVKGFEDSNTINGKVSQEMFDSIIREVVEEIGVPPESLRNPVFIGISR 225

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 Q+LYTSAQDGYES QLYTVPL+
Sbjct: 226 RELNVRPAAFFFMKCSLESVEIQDLYTSAQDGYESTQLYTVPLI 269

[Close]

BLAST of CmaCh20G004370 vs. NCBI nr
Match: XP_022946946.1 (nudix hydrolase 9 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P PQELG+  HD VKGF DSNTIN ++S +MFD IIREVVE IGV  ESL +        
Sbjct: 166 PEPQELGIECHDHVKGFEDSNTINGKVSQEMFDSIIREVVEEIGVPPESLRNPVFIGISR 225

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPLV 76
                                 Q+LYTSAQDGYES QLYTVPL+
Sbjct: 226 RELNVRPAAFFFMKCSLESVEIQDLYTSAQDGYESTQLYTVPLI 269

[Close]

BLAST of CmaCh20G004370 vs. TAIR 10
Match: AT3G46200.1 (nudix hydrolase homolog 9 )

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-08
Identity = 33/103 (32.04%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 2   PYPQELGMAYHDDVKGFADSNTINRRLSWKMFDRIIREVVEHIGVQTESLNS-------- 61
           P P  +G+ YH           +N++++ +MFD II EVVE  G+   SL+S        
Sbjct: 170 PEPTAVGIDYHQLENNVQTGEVLNKKVTQEMFDSIICEVVEETGIPASSLSSPLFIGISR 229

Query: 62  ----------------------QELYTSAQDGYESAQLYTVPL 75
                                 Q LY+SA+DG+ES QL+TV L
Sbjct: 230 RELNVRPAMFFYLKCSHHSDDIQRLYSSAEDGFESTQLHTVSL 272

The following BLAST results are available for this feature:

BLAST of CmaCh20G004370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYR2	5.0e-07	32.04	Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1	[more]

BLAST of CmaCh20G004370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G501	9.5e-17	51.92	nudix hydrolase 9 OS=Cucurbita moschata OX=3662 GN=LOC111450973 PE=4 SV=1	[more]
A0A6J1CXQ6	2.1e-16	51.92	nudix hydrolase 9 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015537 PE=4...	[more]
A0A6J1CY79	2.1e-16	51.92	nudix hydrolase 9 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015537 PE=4...	[more]
A0A1S4DXX8	2.1e-16	51.43	nudix hydrolase 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490571 PE=4 SV=1	[more]
A0A5A7V3T1	3.6e-16	51.92	Nudix hydrolase 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CmaCh20G004370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901218.1	1.0e-17	53.33	nudix hydrolase 9 isoform X3 [Benincasa hispida]	[more]
XP_038901216.1	2.3e-17	52.88	nudix hydrolase 9 isoform X1 [Benincasa hispida]	[more]
XP_038901217.1	2.3e-17	52.88	nudix hydrolase 9 isoform X2 [Benincasa hispida]	[more]
KAG6605492.1	2.0e-16	51.92	Nudix hydrolase 9, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946946.1	2.0e-16	51.92	nudix hydrolase 9 [Cucurbita moschata]	[more]

BLAST of CmaCh20G004370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46200.1	3.6e-08	32.04	nudix hydrolase homolog 9	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G004370.1	CmaCh20G004370.1	mRNA