CmaCh20G001160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G001160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PPIase cyclophilin-type domain-containing protein
Location	Cma_Chr20: 540330 .. 541570 (+)
RNA-Seq Expression	CmaCh20G001160
Synteny	CmaCh20G001160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTCCTTTCAAAGACAGGAAATTGCCTTATGAACGGAAAGGAAGGGAAAGGAAAGTAAAGGAAAGGAAAGGAAAGGAAAGGCAAGGTCATTCTTACATCTAATTCTTAGGATTTAATGGGTGATTTATGATGTTTTTAGTTGTTCTTGGCCACCATTAGACAGAATAATTATTGCTCTTATGGTTGACTCATGGACTACAAACTTGAATTTGTTCAAAACGTCTAGTTTTATTCATAGAACAAAGAAAGCTGATAGTTTTGAACACACATTATTTGCAATTATAACTATGAGGTTTCTAAAGATTGTTCAGTTGAAGTCCTTTCAACAATGGGGTCTACGTGCAAACTTTGGTGGAAGTATTGGATAATTGTATTGTGTTTTATATGAAATTTTTATACATGGTAATATTCTAATGATTGTTATTAATTCATCAGTGTTGAGTATTTTTACACTAAAAGATCTACTAACCTTTCTTTTCAAATGCTCCACTATGATTATTATCCACTCTAACTAGAAAATTAAGGAAATCTTAGATATTATTCACTCTCAACAAAAAATTAAGAAAATTAAAGAATTTTTTCTCACACCATCCACCAGACAAAAAAATTAAGTAAACCTTTCTTACCTAACCCTCTTCAATATAAAATATTGATCTTGAAAAACAAATTATGATACACGATGCTGTGCAAGGGCTTGTCAGATGGCACGGCACAATAGAAGGTCCGAGCCTAAGAGAGCAAATACACTGCTAAAACAAACAAAGATAGCAACCATCGCTCACTCGTGACCAACAATTTACGTATCTTTCGTGGAAACACCGTACTTCTGTTGCATCCTGGCGATTTCATCCTCTTTCTTCTTCTTGGTCGAACTTTTTGCTCATCTTGGCCTGTTGGTAGTACAACACGATCAGATACCGATTCGCAACGTTGAAACCGGAGAGGTGATCCACCGCCGTCTTAGCATCATAGATATCTTCGTAAACAACAAAGGCGGTACCTCTCGTATCCTTGTTCTTCCCAATCCGAATCTGCCGGATCGCCCCGTACTTGCCGAAGATATCATACATCTCTTCGCTGGTGGCAAATTTCGCACATACAAGACTCTGTTGACCTCCGGCGGCAGCCTCGTGTTTCCCTTGCGGGGAAGGCTGAATGTCGCCATGGACTATGGAGGAAGAAGGTTCCTTAAGAGCCTGTTTGGGAGAAGAGAGTGCGAGAAATTTCAGAGATAG

mRNA sequence

ATGGTGGTTCCTTTCAAAGACAGGAAATTGCCTTATGAACGGAAAGGAAGGGAAAGGAAAGTAAAGGAAAGGAAAGGAAAGGAAAGGCAAGTACAACACGATCAGATACCGATTCGCAACGTTGAAACCGGAGAGGTGATCCACCGCCGTCTTAGCATCATAGATATCTTCGTAAACAACAAAGGCGGTACCTCTCGTATCCTTGTTCTTCCCAATCCGAATCTGCCGGATCGCCCCGTACTTGCCGAAGATATCATACATCTCTTCGCTGGTGGCAAATTTCGCACATACAAGACTCTGTTGACCTCCGGCGGCAGCCTCGTGTTTCCCTTGCGGGGAAGGCTGAATGTCGCCATGGACTATGGAGGAAGAAGGTTCCTTAAGAGCCTGTTTGGGAGAAGAGAGTGCGAGAAATTTCAGAGATAG

Coding sequence (CDS)

ATGGTGGTTCCTTTCAAAGACAGGAAATTGCCTTATGAACGGAAAGGAAGGGAAAGGAAAGTAAAGGAAAGGAAAGGAAAGGAAAGGCAAGTACAACACGATCAGATACCGATTCGCAACGTTGAAACCGGAGAGGTGATCCACCGCCGTCTTAGCATCATAGATATCTTCGTAAACAACAAAGGCGGTACCTCTCGTATCCTTGTTCTTCCCAATCCGAATCTGCCGGATCGCCCCGTACTTGCCGAAGATATCATACATCTCTTCGCTGGTGGCAAATTTCGCACATACAAGACTCTGTTGACCTCCGGCGGCAGCCTCGTGTTTCCCTTGCGGGGAAGGCTGAATGTCGCCATGGACTATGGAGGAAGAAGGTTCCTTAAGAGCCTGTTTGGGAGAAGAGAGTGCGAGAAATTTCAGAGATAG

Protein sequence

MVVPFKDRKLPYERKGRERKVKERKGKERQVQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFAGGKFRTYKTLLTSGGSLVFPLRGRLNVAMDYGGRRFLKSLFGRRECEKFQR

Homology

[Close]

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL
Match: A0A498J9D9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020350 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.4e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 31   VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
            VQHD++P+R++E GEVIHRR  ++DI VNN+GG S +LV P+ NLP   VLAED++H  A
Sbjct: 1057 VQHDEVPVRDIEAGEVIHRRFGVVDILVNNEGGASGVLVRPDANLPYGAVLAEDVVHFLA 1116

[Close]

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL
Match: A0A498HNE4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012732 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 31   VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
            V+HD++P+R+VE GEVIHRR  ++D+ VN++ G S +LV P+ NLP   VLAED++HL A
Sbjct: 1050 VEHDEVPVRDVEAGEVIHRRFGVVDVLVNDECGASGVLVRPDVNLPYCAVLAEDVVHLLA 1109

[Close]

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL
Match: A0A2P2IK38 (Uncharacterized protein MANES_01G177500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 31  VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
           VQ+DQ+P+ +VE  EV+H RL ++D+ V+++GG++ +LV  +P+L DRPVL EDI+HL A
Sbjct: 72  VQNDQVPVGDVEAREVVHSRLGVVDVLVDDEGGSASVLVGSDPDLADRPVLPEDIVHLLA 131

[Close]

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL
Match: K4AB94 (PPIase cyclophilin-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 31  VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
           V+HD++ + +VE GEV+   L ++D+ V++ GG +R+L +  P+LPDR VLAED++HL A
Sbjct: 71  VEHDEVAVGDVEAGEVVDGVLGVVDVLVDDVGGAARVLGVAQPDLPDRAVLAEDVVHLLA 130

[Close]

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL
Match: A0A6A5LQB3 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048736 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 31  VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
           +++D++ I NVET EVI     ++DI V+++GG + +LV  + +L    V AEDI+HLFA
Sbjct: 13  IENDEVTISNVETREVIDGGFGVVDILVDHEGGATCVLVGADTDLAYGTVFAEDIVHLFA 72

Query: 91  GGKFRTYKTLLTSGGSLVFPLRGRLNVAM 120
           G       T  +  G L  P +    +A+
Sbjct: 73  GLYSPPAATAYSPSGDLSPPYKDSYAIAI 101

[Close]

BLAST of CmaCh20G001160 vs. NCBI nr
Match: RXH91327.1 (hypothetical protein DVH24_020350 [Malus domestica])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 31   VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
            VQHD++P+R++E GEVIHRR  ++DI VNN+GG S +LV P+ NLP   VLAED++H  A
Sbjct: 1057 VQHDEVPVRDIEAGEVIHRRFGVVDILVNNEGGASGVLVRPDANLPYGAVLAEDVVHFLA 1116

[Close]

BLAST of CmaCh20G001160 vs. NCBI nr
Match: RXH73048.1 (hypothetical protein DVH24_012732 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-11
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 31   VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
            V+HD++P+R+VE GEVIHRR  ++D+ VN++ G S +LV P+ NLP   VLAED++HL A
Sbjct: 1050 VEHDEVPVRDVEAGEVIHRRFGVVDVLVNDECGASGVLVRPDVNLPYCAVLAEDVVHLLA 1109

[Close]

BLAST of CmaCh20G001160 vs. NCBI nr
Match: KAF1864171.1 (hypothetical protein Lal_00048736 [Lupinus albus])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 31  VQHDQIPIRNVETGEVIHRRLSIIDIFVNNKGGTSRILVLPNPNLPDRPVLAEDIIHLFA 90
           +++D++ I NVET EVI     ++DI V+++GG + +LV  + +L    V AEDI+HLFA
Sbjct: 13  IENDEVTISNVETREVIDGGFGVVDILVDHEGGATCVLVGADTDLAYGTVFAEDIVHLFA 72

Query: 91  GGKFRTYKTLLTSGGSLVFPLRGRLNVAM 120
           G       T  +  G L  P +    +A+
Sbjct: 73  GLYSPPAATAYSPSGDLSPPYKDSYAIAI 101

The following BLAST results are available for this feature:

BLAST of CmaCh20G001160 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498J9D9	7.4e-13	58.33	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_020350 PE=4 SV=1	[more]
A0A498HNE4	4.0e-11	55.00	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_012732 PE=3 SV=1	[more]
A0A2P2IK38	4.5e-10	51.67	Uncharacterized protein MANES_01G177500 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]
K4AB94	1.9e-08	46.67	PPIase cyclophilin-type domain-containing protein OS=Setaria italica OX=4555 PE=...	[more]
A0A6A5LQB3	1.1e-05	35.96	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048736 PE=4 SV=1	[more]

BLAST of CmaCh20G001160 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH91327.1	1.5e-12	58.33	hypothetical protein DVH24_020350 [Malus domestica]	[more]
RXH73048.1	8.4e-11	55.00	hypothetical protein DVH24_012732 [Malus domestica]	[more]
KAF1864171.1	2.4e-05	35.96	hypothetical protein Lal_00048736 [Lupinus albus]	[more]

BLAST of CmaCh20G001160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001160.1	CmaCh20G001160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0007165	signal transduction
molecular_function	GO:0004672	protein kinase activity