CmaCh19G008820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G008820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtochlorophyllide reductase
LocationCma_Chr19: 8112220 .. 8112543 (-)
RNA-Seq ExpressionCmaCh19G008820
SyntenyCmaCh19G008820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGCTACGGTGATCGATGGCAACCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCTGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGCTACGGTGATCGATGGCAACCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCTGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACAGCGCCGGCGGCGGAGCTGACGGCGGAGCTACGGTGATCGATGGCAACCGGAGAGAAGGAAATTCATATGGGTTTTCAATGATTTACACTCTCCTTCGAACCCCATTTTCGCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCTGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGCGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Homology
BLAST of CmaCh19G008820 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.9e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CmaCh19G008820 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG----ATVIDGNRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG    A V+DG+RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVVDGDRREGNSYGFSMIY 60

Query: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of CmaCh19G008820 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           MWRLAA +RRNLHNIRKSPRVADESMY  GGG DGG  V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMY-GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

BLAST of CmaCh19G008820 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG----ATVIDGNRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG    A V+DG+RREGNSYGFSMIY
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVVDGDRREGNSYGFSMIY 100

Query: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 103
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

BLAST of CmaCh19G008820 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-41
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVID-GNRREGNSYGFSMIYTLL 60
           MWRLAAAVR  LHNIRKSPRVADESM+S GGG DGG  V+D G RRE NS+G S+IY +L
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFS-GGGVDGGGRVVDGGRRRERNSHGVSIIYNVL 60

Query: 61  RTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           RTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

BLAST of CmaCh19G008820 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 6.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CmaCh19G008820 vs. NCBI nr
Match: XP_023554647.1 (uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.6 bits (553), Expect = 5.1e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRRE NSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRRERNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CmaCh19G008820 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG  VIDGNRR+GNSYGFSMIYTLLR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

BLAST of CmaCh19G008820 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 99/112 (88.39%), Postives = 104/112 (92.86%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--SAGGGADGG---ATVIDGNRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  + GGG DGG   A V+DG+RREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YTLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           Y+LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

BLAST of CmaCh19G008820 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGG----ATVIDGNRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG    A V+DG+RREGNSYGFSMIY
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVAAVVVDGDRREGNSYGFSMIY 60

Query: 61  TLLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           +LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

BLAST of CmaCh19G008820 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-24
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           M ++ + +RRNL N+RKSPRVAD++   +     G   V +G R   NS        ++R
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNS-------VIMR 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
            PFS++SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  FPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

BLAST of CmaCh19G008820 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60
           M ++ + +RRNL N+RKSPRVADES           +T ++G+   GN         +++
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALP--------STTVNGDHGGGNGSNGG----IMK 60

Query: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
            P S++SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  FPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HZK32.9e-54100.00uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352... [more]
A0A5D3BTM81.2e-4789.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1C6U01.5e-4282.24uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A1S3C1342.6e-4284.91uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=... [more]
A0A6J1ER344.9e-4182.41uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
Match NameE-valueIdentityDescription
XP_022969305.16.1e-54100.00uncharacterized protein LOC111468352 [Cucurbita maxima][more]
XP_023554647.15.1e-5399.07uncharacterized protein LOC111811837 [Cucurbita pepo subsp. pepo][more]
KAG6572248.11.9e-5297.20hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038888385.11.4e-4788.39uncharacterized protein LOC120078235 [Benincasa hispida][more]
KAA0059153.12.5e-4789.19uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
AT5G35732.11.8e-2451.40unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G04795.11.1e-2146.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 105..107
NoneNo IPR availablePANTHERPTHR48165BNAC03G44900D PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G008820.1CmaCh19G008820.1mRNA