CmaCh19G008230 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh19G008230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr19: 7851548 .. 7852544 (+)
RNA-Seq ExpressionCmaCh19G008230
SyntenyCmaCh19G008230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAATTTAGAGGTGATAGTTTCTTGATTTACTGTCACTGGAGATCAATCACCGTGTTTCTATTTTCACTGCAAGATTTTTCTGGCCATCCAATGGGGTCCTCATTGCAGTACGATACTCCCTCAATGGTGCCAGAAACATAGAGTTATCTTGTTAATCTTCTTGTTCTTCGCATTTGAGTTCGCAAAGTCTAAAACGAAGACTACACGTAATAGTTGCTTCCCGATTTGATTTGTGTACTTTAGCATGTTATGATTTGATTTGATTTGATTTGATCTGGGTTTTTCTTCATTTTAATGTTGATTTTGGATTCTTTATTTTGATCTTGTAGGGGAAGATAGCAGCTGATTTTGAAGATAGTGGCGATGTTCATTGTATTGCTGGCTTACCTATTCAGATCAGTATCCTTTTCCACATCAATTTCTGAGTTGAAAACTGCTGATATATATATATATATATATATATTCATCTTATTGCTGTCTTGATTTGGGTAGCAAATAAGGAATGCCAGTAGCCTTTCAACTGAATGTACAGGAAATTCTTTGTAGATTTGGTAGTATTGTTGGTATGGTGATGAAGTAAGCTGTAGTCTGTTCAGAAAGATGTAATTGGTTAGCTGCTCAGTGGTAGCAAACTAGTTGTAGTTTTATATCTTTTTCTTGGGTTTGATTTCTTGTTCCAATGAAATTTTGAGCTGAAACTGAAACAGGAAACAGAATAACTGGTTCTTGTTCTTGTTCTTGGTCTTGGTCTTGGTGGTTGAGACAAGATGGTTGAAATAAATGAACCAATTCATGGATTTGGCTGTCCTGTTCTTATTTATTGTCGACTTTGATTTTATTTGGGACAGAGTTTGATCTATCTTCTGTTTCACTGGACCAGATGCCCATGAATCATCAGACAAAATCTGATGCTTCATTATATCATCAACTATGAACATCCTCGTAAGCCCCAAAATTGACCAAAAATATGTCATATTGTGTGGATATAACG

mRNA sequence

ATGCAACAATTTAGAGGTGATAGTTTCTTGATTTACTGTCACTGGAGATCAATCACCGTGTTTCTATTTTCACTGCAAGATTTTTCTGGCCATCCAATGGGGTCCTCATTGCATTCGCAAAGTCTAAAACGAAGACTACACGGGAAGATAGCAGCTGATTTTGAAGATAGTGGCGATGTTCATTGTATTGCTGGCTTACCTATTCAGATCAGTATCCTTTTCCACATCAATTTCTGAGTTGAAAACTGCTGATATATATATATATATATATATATTCATCTTATTGCTGTCTTGATTTGGGTAGCAAATAAGGAATGCCAGTAGCCTTTCAACTGAATGTACAGGAAATTCTTTGTAGATTTGGTAGTATTGTTGGTATGGTGATGAAGTAAGCTGTAGTCTGTTCAGAAAGATGTAATTGGTTAGCTGCTCAGTGGTAGCAAACTAGTTGTAGTTTTATATCTTTTTCTTGGGTTTGATTTCTTGTTCCAATGAAATTTTGAGCTGAAACTGAAACAGGAAACAGAATAACTGGTTCTTGTTCTTGTTCTTGGTCTTGGTCTTGGTGGTTGAGACAAGATGGTTGAAATAAATGAACCAATTCATGGATTTGGCTGTCCTGTTCTTATTTATTGTCGACTTTGATTTTATTTGGGACAGAGTTTGATCTATCTTCTGTTTCACTGGACCAGATGCCCATGAATCATCAGACAAAATCTGATGCTTCATTATATCATCAACTATGAACATCCTCGTAAGCCCCAAAATTGACCAAAAATATGTCATATTGTGTGGATATAACG

Coding sequence (CDS)

ATGCAACAATTTAGAGGTGATAGTTTCTTGATTTACTGTCACTGGAGATCAATCACCGTGTTTCTATTTTCACTGCAAGATTTTTCTGGCCATCCAATGGGGTCCTCATTGCATTCGCAAAGTCTAAAACGAAGACTACACGGGAAGATAGCAGCTGATTTTGAAGATAGTGGCGATGTTCATTGTATTGCTGGCTTACCTATTCAGATCAGTATCCTTTTCCACATCAATTTCTGA

Protein sequence

MQQFRGDSFLIYCHWRSITVFLFSLQDFSGHPMGSSLHSQSLKRRLHGKIAADFEDSGDVHCIAGLPIQISILFHINF
Homology
[Close]
BLAST of CmaCh19G008230 vs. NCBI nr
Match: KAG6572195.1 (Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 4.9e-05
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 48  GKI-AADFEDSGDVHCIAGLPIQISILFHINF 79
           GKI AADFED GDVH IAGLPIQISILFHINF
Sbjct: 770 GKIAAADFEDCGDVHLIAGLPIQISILFHINF 801

The following BLAST results are available for this feature:
BLAST of CmaCh19G008230 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G008230 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh19G008230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572195.14.9e-0590.63Protein FAR1-RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh19G008230 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G008230.1CmaCh19G008230.1mRNA