CmaCh19G004170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G004170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L14, chloroplastic
Location	Cma_Chr19: 5036698 .. 5037225 (+)
RNA-Seq Expression	CmaCh19G004170
Synteny	CmaCh19G004170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGGTCTTTGTTTGAGATGAAAAAAAAACAATTGAAGATTTCTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

mRNA sequence

ATGAGTGGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

Coding sequence (CDS)

ATGAGTGGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGAAAGCGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAA

Protein sequence

MSGKCLYEPNSLLRDRNVESKESDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL

Homology

[Close]

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot
Match: Q8WKP4 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot
Match: Q49KW2 (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.6e-54
Identity = 105/112 (93.75%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGD+IVAVIK+A+PNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           R+NGMIIRYDDNAAVVIDQEGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct: 71  RDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot
Match: B1A971 (50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.9e-54
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           R NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI RELRQLNFTKI+SLAPEVL
Sbjct: 71  RNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot
Match: A0A372 (50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.9e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPN PLERSEV+RAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           R+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKI+SLAPEVL
Sbjct: 71  RDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot
Match: Q09ME1 (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 105/112 (93.75%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+AVPNTPLERSEVIRAVIVRTCKEL+
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELR 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           R+NGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct: 71  RDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL
Match: A0A218KG78 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL
Match: G3ETT4 (50S ribosomal protein L14, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL
Match: A0A1X9Q175 (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL
Match: A0A1S4EU43 (50S ribosomal protein L14, chloroplastic OS=Cucumis melo OX=3656 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL
Match: A0A249RZI1 (50S ribosomal protein L14, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl14 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. NCBI nr
Match: YP_004841820.1 (ribosomal protein L14 [Cucumis melo subsp. melo] >YP_009004079.1 ribosomal protein L14 [Cucumis hystrix] >YP_009236315.1 ribosomal protein L14 [Gynostemma pentaphyllum] >YP_009317422.1 ribosomal protein L14 [Coccinia grandis] >YP_009326026.1 ribosomal protein L14 [Citrullus lanatus] >YP_009346518.1 ribosomal protein L14 [Cucumis x hytivus] >YP_009348068.1 ribosomal protein L14 [Citrullus mucosospermus] >YP_009420831.1 ribosomal protein L14 [Citrullus colocynthis] >YP_009431593.1 ribosomal protein L14 [Citrullus amarus] >YP_009431679.1 ribosomal protein L14 [Citrullus rehmii] >YP_009439927.1 ribosomal protein L14 [Gynostemma caulopterum] >YP_009440193.1 ribosomal protein L14 [Gynostemma longipes] >YP_009440280.1 ribosomal protein L14 [Gynostemma burmanicum (nom. inval.)] >YP_009440367.1 ribosomal protein L14 [Gynostemma pubescens] >YP_009447487.1 ribosomal protein L14 [Cucurbita maxima] >YP_009447572.1 ribosomal protein L14 [Cucurbita moschata] >YP_009456097.1 ribosomal protein L14 [Momordica charantia] >YP_009456182.1 ribosomal protein L14 [Lagenaria siceraria] >YP_009468897.1 ribosomal protein L14 [Gynostemma compressum] >YP_009505116.1 ribosomal protein L14 [Cucurbita pepo] >YP_009560872.1 ribosomal protein L14 [Trichosanthes kirilowii] >YP_009674427.1 ribosomal protein L14 [Siraitia grosvenorii] >YP_009738238.1 ribosomal protein L14 [Siraitia siamensis] >YP_009751521.1 ribosomal protein L14 [Thladiantha dubia] >YP_009751774.1 ribosomal protein L14 [Herpetospermum pedunculosum] >YP_009751942.1 ribosomal protein L14 [Cyclanthera pedata] >YP_009752026.1 ribosomal protein L14 [Cionosicys macranthus] >YP_009752111.1 ribosomal protein L14 [Dendrosicyos socotranus] >YP_009752448.1 ribosomal protein L14 [Trichosanthes tricuspidata] >YP_009752702.1 ribosomal protein L14 [Ampelosycios humblotii] >YP_009752871.1 ribosomal protein L14 [Baijiania yunnanensis] >YP_009753125.1 ribosomal protein L14 [Corallocarpus boehmii] >YP_009753294.1 ribosomal protein L14 [Nothoalsomitra suberosa] >YP_009753741.1 ribosomal protein L14 [Trichosanthes nervifolia] >YP_009860110.1 ribosomal protein L14 [Cucumis melo subsp. agrestis] >YP_010131130.1 ribosomal protein L14 [Benincasa hispida] >YP_247636.1 ribosomal protein L14 [Cucumis sativus] >Q8WKP4.1 RecName: Full=50S ribosomal protein L14, chloroplastic [Cucumis sativus] >ALF03338.1 ribosomal protein L14 [Cucumis sativus var. hardwickii] >ALO21762.1 ribosomal protein L14 [Cucurbita argyrosperma] >ALO21801.1 ribosomal protein L14 [Cucurbita argyrosperma var. palmeri] >ALO21880.1 ribosomal protein L14 [Cucurbita argyrosperma subsp. sororia] >ALO21905.1 ribosomal protein L14 [Cucurbita cordata] >ALO22006.1 ribosomal protein L14 [Cucurbita digitata] >ALO22056.1 ribosomal protein L14 [Cucurbita ecuadorensis] >ALO22120.1 ribosomal protein L14 [Cucurbita ficifolia] >ALO22189.1 ribosomal protein L14 [Cucurbita foetidissima] >ALO22249.1 ribosomal protein L14 [Cucurbita lundelliana] >ALO22308.1 ribosomal protein L14 [Cucurbita maxima subsp. andreana] >ALO22423.1 ribosomal protein L14 [Cucurbita okeechobeensis] >ALO22491.1 ribosomal protein L14 [Cucurbita okeechobeensis subsp. martinezii] >ALO22559.1 ribosomal protein L14 [Cucurbita pepo subsp. fraterna] >ALO22613.1 ribosomal protein L14 [Cucurbita pepo subsp. ovifera] >ALO22687.1 ribosomal protein L14 [Cucurbita pepo var. ozarkana] >ALO22737.1 ribosomal protein L14 [Cucurbita pepo subsp. pepo] >ALO22845.1 ribosomal protein L14 [Cucurbita pepo var. texana] >ALO22889.1 ribosomal protein L14 [Cucurbita pedatifolia] >APW82499.1 ribosomal protein L14 [Citrullus lanatus subsp. vulgaris] >ASY96610.1 ribosomal protein L14 [Cucumis melo var. conomon] >ASY96697.1 ribosomal protein L14 [Cucumis melo var. makuwa] >ASY96784.1 ribosomal protein L14 [Cucumis melo var. momordica] >ASY96871.1 ribosomal protein L14 [Cucumis melo var. dudaim] >ASY96958.1 ribosomal protein L14 [Cucumis melo var. cantalupo] >ASY97132.1 ribosomal protein L14 [Cucumis melo var. inodorus] >ASY97306.1 ribosomal protein L14 [Cucumis melo var. flexuosus] >AVE15368.1 ribosomal protein L14 [Cucumis sativus var. sativus] >QIT04086.1 ribosomal protein L14 [Luffa aegyptiaca] >QJF46421.1 ribosomal protein L14 [Cucumis melo] >QKX48511.1 ribosomal protein L14 [Luffa acutangula] >QNM38567.1 ribosomal protein L14 [Lagenaria siceraria var. microcarpa] >QZL38630.1 ribosomal protein L14 [Citrullus naudinianus] >QZL38718.1 ribosomal protein L14 [Citrullus ecirrhosus])

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. NCBI nr
Match: YP_009753040.1 (ribosomal protein L14 [Gerrardanthus macrorhizus] >QIT06112.1 ribosomal protein L14 [Gerrardanthus macrorhizus])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPE+L
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEIL 122

[Close]

BLAST of CmaCh19G004170 vs. NCBI nr
Match: YP_009945452.1 (ribosomal protein L14 [Sechium edule] >QIT04169.1 ribosomal protein L14 [Sechium edule] >QOE55982.1 ribosomal protein L14 [Sechium edule])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGD+IVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. NCBI nr
Match: YP_009430663.1 (ribosomal protein L14 [Gynostemma cardiospermum] >YP_010015175.1 ribosomal protein L14 [Gynostemma yixingense] >ART65099.1 ribosomal protein L14 [Gynostemma cardiospermum] >QOI14300.1 ribosomal protein L14 [Gynostemma yixingense])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAV+IDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. NCBI nr
Match: YP_009752363.1 (ribosomal protein L14 [Bryonia marmorata] >QIT04337.1 ribosomal protein L14 [Bryonia marmorata])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKA+PNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAIPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL
Sbjct: 71  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 208.0 bits (528), Expect = 4.7e-54
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELK 82
           +DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELK
Sbjct: 11  ADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELK 70

Query: 83  RENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           R NG IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNFTKI+SLAPEVL
Sbjct: 71  RNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

[Close]

BLAST of CmaCh19G004170 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-18
Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 21  KESDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKE 80
           K  DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +
Sbjct: 55  KVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQ 114

Query: 81  LKRENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAIARELRQLNFTKIISLAPEV 134
             R +G  +R+DDNA V++D        +  P GTR+FG +  ELR+    KI++LA  V
Sbjct: 115 RGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHV 172

[Close]

BLAST of CmaCh19G004170 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-18
Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 21  KESDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKE 80
           K  DNSGA+++MCI+ +    ++ A +GD IVA +K+A+PN  +++  V+  V+VR   +
Sbjct: 54  KVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQ 113

Query: 81  LKRENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAIARELRQLNFTKIISLAPEV 134
             R +G  +R+DDNA V++D        +  P GTR+FG +  ELR+    KI++LA  V
Sbjct: 114 RGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHV 171

[Close]

BLAST of CmaCh19G004170 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTC 82
           +DN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIVRQR 88

Query: 83  KELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L + +I S A  ++
Sbjct: 89  KPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 140

[Close]

BLAST of CmaCh19G004170 vs. TAIR 10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 23  SDNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTC 82
           +DN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  
Sbjct: 29  ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIVRQR 88

Query: 83  KELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 135
           K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L + +I S A  ++
Sbjct: 89  KPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 140

The following BLAST results are available for this feature:

BLAST of CmaCh19G004170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WKP4	1.4e-55	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
Q49KW2	4.6e-54	93.75	50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
B1A971	7.9e-54	95.54	50S ribosomal protein L14, chloroplastic OS=Carica papaya OX=3649 GN=rpl14 PE=3 ...	[more]
A0A372	7.9e-54	94.64	50S ribosomal protein L14, chloroplastic OS=Coffea arabica OX=13443 GN=rpl14 PE=...	[more]
Q09ME1	1.3e-53	93.75	50S ribosomal protein L14, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl14 PE=...	[more]

BLAST of CmaCh19G004170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG78	5.3e-53	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus var. hardwickii OX=3...	[more]
G3ETT4	5.3e-53	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis melo subsp. melo OX=412675 G...	[more]
A0A1X9Q175	5.3e-53	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl14 PE=...	[more]
A0A1S4EU43	5.3e-53	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis melo OX=3656 GN=rpl14 PE=3 S...	[more]
A0A249RZI1	5.3e-53	99.11	50S ribosomal protein L14, chloroplastic OS=Cucumis melo var. cantalupensis OX=3...	[more]

BLAST of CmaCh19G004170 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841820.1	1.1e-52	99.11	ribosomal protein L14 [Cucumis melo subsp. melo] >YP_009004079.1 ribosomal prote...	[more]
YP_009753040.1	1.4e-52	98.21	ribosomal protein L14 [Gerrardanthus macrorhizus] >QIT06112.1 ribosomal protein ...	[more]
YP_009945452.1	1.4e-52	98.21	ribosomal protein L14 [Sechium edule] >QIT04169.1 ribosomal protein L14 [Sechium...	[more]
YP_009430663.1	1.4e-52	98.21	ribosomal protein L14 [Gynostemma cardiospermum] >YP_010015175.1 ribosomal prote...	[more]
YP_009752363.1	1.4e-52	98.21	ribosomal protein L14 [Bryonia marmorata] >QIT04337.1 ribosomal protein L14 [Bry...	[more]

BLAST of CmaCh19G004170 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00780.1	4.7e-54	92.86	ribosomal protein L14	[more]
AT5G46160.1	7.1e-18	38.33	Ribosomal protein L14p/L23e family protein	[more]
AT5G46160.2	7.1e-18	38.33	Ribosomal protein L14p/L23e family protein	[more]
AT1G04480.1	2.2e-11	34.48	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	2.2e-11	34.48	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 24..134 e-value: 1.2E-59 score: 214.2
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 23..134 e-value: 2.7E-44 score: 150.1
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 23..134
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 6..134 score: 22.00099
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 18..134 e-value: 1.3E-47 score: 163.0
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 23..134
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 23..134 e-value: 1.6E-46 score: 155.2
None	No IPR available	PANTHER	PTHR11761:SF37	RIBOSOMAL PROTEIN L14B/L23E-RELATED	coord: 23..134
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 72..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004170.1	CmaCh19G004170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome