CmaCh19G004150 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G004150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rop guanine nucleotide exchange factor 7-like
Location	Cma_Chr19: 4996715 .. 4997289 (-)
RNA-Seq Expression	CmaCh19G004150
Synteny	CmaCh19G004150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTAATTGTCAAATATGATTTGTCACTCCTTCTGCCGATGAACTTCTGCTCTGTGTTTTCAATCCGAGGGGAATGGTGAGATGAACCAGTATTTTTTTTTTCAATTTTTTCATGCTTGACCTACTTTTTTTTCTCTTTGATTTTTTATGGCTATCTTTCTATATCTTTTAGTTTTAATAATGGTGGCCATAAATCATTTTGAACCCTATTTTCTTTTATTTGGCTTTATAGGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGTTTGGATTGATGAGGCTTCTAGTGAGTGGAGTCTAAGTGGGTTGCTTTGATTTTGTGTTATGGCTATGATTGAGGAGGGAAAATTGTAATGGAGGAGAGTGGGGTTAAAAAGAGCTAAGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

mRNA sequence

ATGTCTAGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

Coding sequence (CDS)

ATGTCTAGTGTTGGAATCACCGTCCAAACTGTGTCTTTTGAGCTTAATTTGCGGAAGGGAATTGGTCACATTGTGCCTGAAAATGAGACGTTTGGCTATTTGATTGAAGAACATGAACGTGAGAGTAGCTCGAGCTCTAATTTTCTTACATCGAAGACCACAGGGCTTGAGAAGTACAGTCACAGTGGCTCTGAGGACTCATCTTCCCCTTCTTCATTGAGTTAG

Protein sequence

MSSVGITVQTVSFELNLRKGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS

Homology

[Close]

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL
Match: A0A6J1DCF9 (rop guanine nucleotide exchange factor 7-like OS=Momordica charantia OX=3673 GN=LOC111019452 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          +GIGHIVPENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGS+DSSSPSS+S
Sbjct: 11 EGIGHIVPENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSDDSSSPSSMS 66

[Close]

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL
Match: A0A5A7TPL2 (Rop guanine nucleotide exchange factor 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001310 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 21  IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
           IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSSSPSS S
Sbjct: 71  IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSSPSSSS 124

[Close]

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL
Match: A0A1S3BJF9 (rop guanine nucleotide exchange factor 7-like OS=Cucumis melo OX=3656 GN=LOC103490720 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 21 IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSSSPSS S
Sbjct: 12 IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSSPSSSS 65

[Close]

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL
Match: A0A6J1HSJ5 (rop guanine nucleotide exchange factor 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466225 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTT-GLEKYSHSGSEDSSSPSSLS 75
          +GIGHIVPENE F +L+EEH RESSSSS+FLTS+TT GLE++SHSGSEDSS PSSLS
Sbjct: 10 QGIGHIVPENEMFSHLVEEHGRESSSSSDFLTSETTGGLEEHSHSGSEDSSPPSSLS 66

[Close]

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL
Match: A0A6J1HPR1 (rop guanine nucleotide exchange factor 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466225 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTT-GLEKYSHSGSEDSSSPSSLS 75
          +GIGHIVPENE F +L+EEH RESSSSS+FLTS+TT GLE++SHSGSEDSS PSSLS
Sbjct: 10 QGIGHIVPENEMFSHLVEEHGRESSSSSDFLTSETTGGLEEHSHSGSEDSSPPSSLS 66

[Close]

BLAST of CmaCh19G004150 vs. NCBI nr
Match: KAG6571804.1 (hypothetical protein SDJN03_28532, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSL 74
          +GIGHIVPENETFG+LIEEHERESS SS FLTSKTTGLEKYSH+GSEDSSSPSSL
Sbjct: 10 QGIGHIVPENETFGHLIEEHERESSLSSKFLTSKTTGLEKYSHNGSEDSSSPSSL 64

[Close]

BLAST of CmaCh19G004150 vs. NCBI nr
Match: XP_022151538.1 (rop guanine nucleotide exchange factor 7-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-14
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          +GIGHIVPENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGS+DSSSPSS+S
Sbjct: 11 EGIGHIVPENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSDDSSSPSSMS 66

[Close]

BLAST of CmaCh19G004150 vs. NCBI nr
Match: KAG7015487.1 (Rop guanine nucleotide exchange factor 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 46/56 (82.14%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 19  KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
           +GIGHI PENETFG+LIEEH RESSS S+FLTS+TTGLE+++HSGSEDSSSPSSLS
Sbjct: 136 QGIGHIGPENETFGHLIEEHRRESSSCSDFLTSETTGLEEHNHSGSEDSSSPSSLS 191

[Close]

BLAST of CmaCh19G004150 vs. NCBI nr
Match: XP_038882074.1 (rop guanine nucleotide exchange factor 7-like [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 19 KGIGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
          + IG IV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSSSPSSLS
Sbjct: 10 QSIGDIVSENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSSPSSLS 65

[Close]

BLAST of CmaCh19G004150 vs. NCBI nr
Match: KAA0045120.1 (rop guanine nucleotide exchange factor 7-like [Cucumis melo var. makuwa] >TYK23617.1 rop guanine nucleotide exchange factor 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 21  IGHIVPENETFGYLIEEHERESSSSSNFLTSKTTGLEKYSHSGSEDSSSPSSLS 75
           IGHIV ENET G+LIEEH RESSSSS+FLTS+TTGLE++SHSGSEDSSSPSS S
Sbjct: 71  IGHIVLENETLGHLIEEHGRESSSSSDFLTSETTGLEEHSHSGSEDSSSPSSSS 124

The following BLAST results are available for this feature:

BLAST of CmaCh19G004150 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G004150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCF9	9.2e-15	82.14	rop guanine nucleotide exchange factor 7-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7TPL2	1.1e-12	83.33	Rop guanine nucleotide exchange factor 7-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BJF9	1.1e-12	83.33	rop guanine nucleotide exchange factor 7-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1HSJ5	1.5e-12	78.95	rop guanine nucleotide exchange factor 7-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1HPR1	1.5e-12	78.95	rop guanine nucleotide exchange factor 7-like isoform X1 OS=Cucurbita maxima OX=...	[more]

BLAST of CmaCh19G004150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571804.1	1.2e-16	90.91	hypothetical protein SDJN03_28532, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151538.1	1.9e-14	82.14	rop guanine nucleotide exchange factor 7-like [Momordica charantia]	[more]
KAG7015487.1	3.2e-14	82.14	Rop guanine nucleotide exchange factor 7, partial [Cucurbita argyrosperma subsp....	[more]
XP_038882074.1	2.3e-12	80.36	rop guanine nucleotide exchange factor 7-like [Benincasa hispida]	[more]
KAA0045120.1	2.3e-12	83.33	rop guanine nucleotide exchange factor 7-like [Cucumis melo var. makuwa] >TYK236...	[more]

BLAST of CmaCh19G004150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004150.1	CmaCh19G004150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity