CmaCh19G001780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GEM-like protein 2
Location	Cma_Chr19: 1184888 .. 1188742 (-)
RNA-Seq Expression	CmaCh19G001780
Synteny	CmaCh19G001780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATGTTTGTTTTCTTCTTTTCTGCACTTAATGTGTTTGTAATAATTCCTCTGTGGATTCTCATGCTTTTTTCTTTTTTGCATATGTCCAACAGATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAAGTTAGTTTCCTGAATGTGTTGTTTTCTAATTAGAAACTCATTTGCTGCTTCATCTTGATCTGAAACAAGCTTAGTTCTCTCCTGTTTAATATGATTGCTCAAGCTTTCAATGAATTGGTTCCAAATAATTAAAAGAGTTTCTGTCTGTAAAGAAATGGTTTCAGGTTTGTCATCTCTTGGTAATTTAATTGGTAGAGCTTTTAATGATTGGTTTCAAACGATTGAAACTGATTCTTTTTTGTAAAGAAATGGTTTCAGGTTTCCCTTAAAGCAGTCATGATTTTCTCTGTCCCTTTGATCCTTTTCTAGAATAATGAAATTTGGACGCTGGAATTGTATTTCTGTTTGATGTCTTCTCGGGATTGTTAGCTTCTAATCTGTTAGACAATATATGTTTTTCCCAACAGTGAAACTTGGTTCTAGTGTCACTGATACGGCAATGACTAGGCTTCATCTTGGGACGAAGTTACTTACAAAAGGTGGTATTAGAAATTACGGATCTTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGGTTTGCTTTGGACTTCCTCAAAAGGCCTCGTACTAATGGAGATGTATTCCTTACTTGCAAACCTATAATCATTCCCTAAATTAGCCAACATGAGACTCCATCCCACAATCCTTTGCCTGCTATCTGTCCTGTCCATTTTCTCTGGGCCTGTAAATGGGACTCCATTCATATCCACAAAAAGAGTGGGCTTTTGTAGTGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGTATGTCTGGCCCATTGTTCTTGAAGATATTTTGTTCTGAGGGATCTGAAATATGATTTTAGGATATATAACTTAGCGTAAGCGATTCACAGTGTTTTTCTTGGCCTGTTTGAAACTAATACAGCCTTAGATATATTGAAGAAAAGACAAAATAGAACAGAAAGAGTACTCATATGTTTGAGAGGTCTCCACAAAAAGATTCTACTGGCTGAACTCTCTCTGTTCACGTCCCCACTGACATATACTTCTCTTATCTAACATGTGGTGAGGGCCCTGCTGCCTTCACTTTCATAGATACTCTATCTCAGTTACAGCTGACCAATTCTCCCTCCATCTAACTTCCATTTGCATTTCCCGCCCTTTATTCGATACGGATAGGTGGCTTCTTGAATGTAGGGAAAATTTCTAGTACTACCGTACCTCCAATCATTTGTTTGTCATAAAAAAAATATAATTATAAATGGCGTCTATGAAATGAAATCGTATGTCATTTAGTAACGTGTCAAATGTTGAATGGAAGGAGTATGTATTTGTAACAGTCCAAACCCACCGCTAACAAATATTGTTCTCTTTGGGCTTTTCCTTTCAAGTTTCCCTTCAAGGTTTTTAAAACGCATCTATTAGGGAGAAGTTTCCACACCTTCATCACAATCCACCCCCTTAGGGCACACCGGCCAATGTCTGACTTTGATACCATTTGTAACAGCTCAATCTCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTTCCTTTCGAGTTTCCCTTCAAAGTTTTTAAAACGTGTCTATTAAGGAGAGGTTTCCGCACCCTCATCACAATCCACCTCTGATATCATTTGTAACACCTCAAGCCCACCATTAGTAAATATTGTCCTCTTTGGGCTTTCTCTTTTGGGCTTCCCCTCAAGGCTTTTAAAACGTGTTTGCTAGGAAGAGATTTTCACACCCCTTATAAAGAATGTTTTGTTCCCCCGTCGAATCGATATGGGATCTTACAGGACTACCATACTACTCAAAAAAATTTCATGCATTAATTACCCTGCTTTTTCTCTTAGTCTTCGGCAAAGAGATCAGAACAAGAAGAAGAGTTATCCACTGGTTGGTAGCCAAGTTGTCTATACAATTATTCTCAGAACTTGCTTTAGTATGATTATGTTTAGAATTTTAAGCATGGTGGAACTGTAGCAGCTAGGGAAATAATTATGAAGTTCTGCAAAACAGTTTGATTTTCCTTGTTTTTTCTTATTGTGATAGAAATAATCAAAGTTCAAATCCATAACTATAGAAAGATACATCCATAAGAACAAAACTTAAATTACATAAGATAAATAGAACTAGCTAGATTTATAGTTTAGTACTGATTTGAAACCCTGTGAGTAGCAAAGTGATGAGTTCATAATCTCTCAACTGTATAACTCATACTAATTTAGGCGACGCTCACTCACTGTTAGGAGAGGATTATGAGGCTGAAAAAGGATAGTGTATCAGGGAAATGTGTTCATCCTTGTTTGGTCCCATTATTGCACATCCATGCATAGAACTAACTCAGAATTCATGCAACTATACCCAACTGTGATCTTGAAAACTATGCTTGTGTTAACTACTTGATCTTGCACTTTATCCCCTTCTCAAATGATTGGTATTTGAGTAGAACCCATCACCGGATGAGTTTCGTGAGTTTCTTGTCATTTTATCTATCTTTTTCGCTCAAGTTTTCAACTAGGGATCTTCTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACCGTGATGAATATGTTGGTGGTGATAGCGGTTGATCAGTTGGGCAAATCAACCCTTCTTCAAACCTTATGGTCCCCTCACAAAAATACATCCAAATAATCACGAGGGACTCTCATGAATTCTGGTTCATGGGATTCATATCATAAACAAGGCTGTCAAGACTTTAACCACTCGGAGGAAGCCATAATGTAACAACTCAAACCCCGCTTTGACTCGTTACCTATCGCCGTCAGTATTACGGTTTTAAAATGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTACGTTCCCTTTTCCAACCAATAAGGGATCTCACAATCCACCCCTTGAGGGCCTAGCTTCCTCGTTAGCACACCGCCCGGTATTTGGCTATGATACCATTTGTAACAGCTCAAGTCCACCGCTAGTGAATATTGTTCGTTTTGGCTCGTTACATATCGTTGTCAGCCTCACGGTTTTAAAAGTGTCTGCTAGGGAGAGATTTCCACACCCTTATAATGAATGTTTCGTTCTCTTCTCTAATCGATATAGGATCTCACACATATGCAACCGTTTCCTCTCACTATCTCTATGTTTTGGATTTTAAAATAGCAATGCCTCATTCCAATCACGGGATACATATTCAAGGACATTTACGGTTTCTTTCTCATACATCTGACCTGTAACGGTGCAAATAGCTTTATAAACTAAAGTTTATATCTTACACTTATGAAAACTAAGCAACCTATGCTTTGACTTGAGATTATATTATTGATTACTTAGAAAGTTGCGAAGAAATTCTAGTGGAGAGGTCTTTATGATCTTTATTTCACTTGTTTTTGGCATCTTCCAAAGCCATATTCATTTGCTATGTCCTAACTTTTAGGGAATATCAATACATGTGAATAAGAATTAGATGCTTGAATTTCACTTTAGCGCTCTTTTTTTAGGCCTTTTTGCAGAACTGTTAG

mRNA sequence

ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAATGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGAACTGTTAG

Coding sequence (CDS)

ATGGCTACATATGAACAATTTCAGCATATCGGAATCGACGCAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCCTATGTTCAGTATTCCTCTGCCTCCGCATCCCCAAATGGAAAATATAAGATGTGGGAAGCGTTGGATCGGTGCGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCCTCTGGAATCACTGTCAGTTCTTTCCTCAATTCAATGAGTTTCCTCTTTTTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGAACTGTTAG

Protein sequence

MATYEQFQHIGIDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNEFPLFYYPSPGQPQWILYKNC

Homology

[Close]

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A6J1HQK3 (GEM-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111466898 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 18 MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 74
          MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH
Sbjct: 1  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 56

[Close]

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCD7 (GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.1e-21
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLW 71
           +D I++MSN LD+++N YVQ SSAS SPNGKYKMWE LDRCGK FEDCS+ +EA AD +W
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKYKMWEVLDRCGKKFEDCSKTVEAAADGVW 60

Query: 72  NHCQFFPQFNE------------------------------------------------- 101
           NH +      +                                                 
Sbjct: 61  NHMKLSSSVTDAAMARLHQGTKLLTEGGYKKVFQQTFGFVDGDKYLDCFACYLSTSSGPV 120

[Close]

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A6J1E018 (GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 56/148 (37.84%), Postives = 64/148 (43.24%), Query Frame = 0


Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFF 77
           MSN LD ++NPYVQ+SSASASPNGK KMWE L RCGK  EDCSR +E  ADS+ +H +  
Sbjct: 1   MSNRLDDRENPYVQFSSASASPNGKNKMWEVLGRCGKRLEDCSRKVEVAADSVRHHLRLS 60

Query: 78  PQF--------------------------------------------------------- 101
           P                                                           
Sbjct: 61  PSVTDAAMARLHQGTKLLTEGGYEKVFQQTFGFIHGDKYVDSFACYLSTSSGPVNGTLYI 120

[Close]

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCH4 (GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.7e-15
Identity = 59/184 (32.07%), Postives = 70/184 (38.04%), Query Frame = 0


Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKY---------------------------- 71
           +D I++MSN LD+++N YVQ SSAS SPNGK                             
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKCLLFSTLNVFVKTPQWYLLPFFFFFVICP 60

Query: 72  --KMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNE------------------- 101
             KMWE LDRCGK FEDCS+ +EA AD +WNH +      +                   
Sbjct: 61  IDKMWEVLDRCGKKFEDCSKTVEAAADGVWNHMKLSSSVTDAAMARLHQGTKLLTEGGYK 120

[Close]

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL
Match: A0A1S3CCV4 (GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-09
Identity = 40/123 (32.52%), Postives = 45/123 (36.59%), Query Frame = 0


Query: 43  YKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFFPQFNE-------------------- 101
           YKMWE LDRCGK FEDCS+ +EA AD +WNH +      +                    
Sbjct: 8   YKMWEVLDRCGKKFEDCSKTVEAAADGVWNHMKLSSSVTDAAMARLHQGTKLLTEGGYKK 67

[Close]

BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_022967352.1 (GEM-like protein 2, partial [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 18 MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 74
          MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH
Sbjct: 1  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNH 56

[Close]

BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_008460398.1 (PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 60/154 (38.96%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 12  IDAIYSMSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLW 71
           +D I++MSN LD+++N YVQ SSAS SPNGKYKMWE LDRCGK FEDCS+ +EA AD +W
Sbjct: 1   MDTIFTMSNCLDSQENHYVQCSSASTSPNGKYKMWEVLDRCGKKFEDCSKTVEAAADGVW 60

Query: 72  NHCQFFPQFNE------------------------------------------------- 101
           NH +      +                                                 
Sbjct: 61  NHMKLSSSVTDAAMARLHQGTKLLTEGGYKKVFQQTFGFVDGDKYLDCFACYLSTSSGPV 120

[Close]

BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_038887655.1 (GEM-like protein 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 61/148 (41.22%), Postives = 68/148 (45.95%), Query Frame = 0


Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQ-- 77
           M N LD KDNPYV YSSAS SPNGKYKM E LDRCGK F DCS+M+EA AD +WNH +  
Sbjct: 1   MINHLDTKDNPYVHYSSASTSPNGKYKMSEVLDRCGKRFADCSKMVEAAADGIWNHLKLS 60

Query: 78  -----------------------------------------FFPQF-------------- 101
                                                    FF  +              
Sbjct: 61  SSVTDAAMARLHQGTKLVTEGGYKKVFQQTFGFVDGDKYLDFFACYLSTSSGPVNGTLYI 120

[Close]

BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_038887653.1 (GEM-like protein 2 isoform X1 [Benincasa hispida] >XP_038887654.1 GEM-like protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-17
Identity = 60/149 (40.27%), Postives = 67/149 (44.97%), Query Frame = 0


Query: 18  MSNPLDAKDNPYVQYSSASASPNGKY-KMWEALDRCGKTFEDCSRMIEAVADSLWNHCQ- 77
           M N LD KDNPYV YSSAS SPNGK  KM E LDRCGK F DCS+M+EA AD +WNH + 
Sbjct: 1   MINHLDTKDNPYVHYSSASTSPNGKSDKMSEVLDRCGKRFADCSKMVEAAADGIWNHLKL 60

Query: 78  ------------------------------------------FFPQF------------- 101
                                                     FF  +             
Sbjct: 61  SSSVTDAAMARLHQGTKLVTEGGYKKVFQQTFGFVDGDKYLDFFACYLSTSSGPVNGTLY 120

[Close]

BLAST of CmaCh19G001780 vs. NCBI nr
Match: XP_022159858.1 (GEM-like protein 2 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 6.2e-16
Identity = 56/148 (37.84%), Postives = 64/148 (43.24%), Query Frame = 0


Query: 18  MSNPLDAKDNPYVQYSSASASPNGKYKMWEALDRCGKTFEDCSRMIEAVADSLWNHCQFF 77
           MSN LD ++NPYVQ+SSASASPNGK KMWE L RCGK  EDCSR +E  ADS+ +H +  
Sbjct: 1   MSNRLDDRENPYVQFSSASASPNGKNKMWEVLGRCGKRLEDCSRKVEVAADSVRHHLRLS 60

Query: 78  PQF--------------------------------------------------------- 101
           P                                                           
Sbjct: 61  PSVTDAAMARLHQGTKLLTEGGYEKVFQQTFGFIHGDKYVDSFACYLSTSSGPVNGTLYI 120

The following BLAST results are available for this feature:

BLAST of CmaCh19G001780 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQK3	3.6e-25	100.00	GEM-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111466898 PE=4 SV=1	[more]
A0A1S3CCD7	9.1e-21	38.96	GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1	[more]
A0A6J1E018	3.0e-16	37.84	GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1	[more]
A0A1S3CCH4	5.7e-15	32.07	GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1	[more]
A0A1S3CCV4	4.7e-09	32.52	GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1	[more]

BLAST of CmaCh19G001780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967352.1	7.4e-25	100.00	GEM-like protein 2, partial [Cucurbita maxima]	[more]
XP_008460398.1	1.9e-20	38.96	PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo]	[more]
XP_038887655.1	1.6e-19	41.22	GEM-like protein 2 isoform X2 [Benincasa hispida]	[more]
XP_038887653.1	4.3e-17	40.27	GEM-like protein 2 isoform X1 [Benincasa hispida] >XP_038887654.1 GEM-like prote...	[more]
XP_022159858.1	6.2e-16	37.84	GEM-like protein 2 [Momordica charantia]	[more]

BLAST of CmaCh19G001780 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001780.1	CmaCh19G001780.1	mRNA