CmaCh19G001500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Poly(A)-specific ribonuclease
Location	Cma_Chr19: 996346 .. 1001327 (+)
RNA-Seq Expression	CmaCh19G001500
Synteny	CmaCh19G001500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTACCAAAATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACGGCTGCACATTTATTAGGAACAGTCACCGATCTCAAAGATATGGCTCCGTACTCTGACTACCTACTCAATGACAACCGAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTAATGGGTCTGACAGTTTGCTTACCGCATTAGTTTATGTCATGAAGGTAATTCTCAAGGTTGAACCAAAGATATACCGAGGCTTTTTATATGGATTACGATATCCCATTCAAGGTTATTGACGACCAGTTGTAATTGTAGATCCATCCAAGTAAACCCACCGTCGTATCTCAACATATTGATTGAATTAGCATATCTGTTTCTTCACTGAATTCAATTCTAAAAAATGAGAGATTTGATTTTAATAGACTGAGCAGCCCAGTCCAGTTTAGCTCGATCCTAAATGGTCGTTGAATACATATCATTTCATCGATTTGATGACATAGCTTATCTAATATCAGGCATAGTCACCACCCTTAAACAATCCACCTTAATGCCCAATTTGTCAAAGATTTTTTTTTTAATTAAAAATAAAATTAATTTTTATTACAATTTTATCCTTTATTTTTAATCAAACTAAAATTTAATATATATATTTTTTTTATTTTATTATTAATTTTTAAAAAACTTGTGTAACATATTTCTTTTTAAATTTGAAAGCATATTTATCTAATGTATTTGTATTTTCATTTATGATGATCTTACTACAGGGTTGATTTTTATAATATATAGTTTCACTTCTTCTCACTTTCATATTCAATTTAATATTTTGATTGTGAAGTTAAAGAAATTATTTGACAAACAATCAATAATCAGAACAACTAGTTCTCTCGAAAGAAAAGAAATGGTGAAAATTATTGAAGAAGGGGAGATAGTTAGAGGTAAATGGGAGCGAGATGTTTGGTCTCATGGATCAAATGGAATTTATGAAGAGTTTTCGATTGTGGCCATAAATACCTAGTTTCTAGGTAAAACTTAAATGTTAAGTTGGTGCTATACAGATTTTTTGAGTTGATGGATGTATTTTTTTTAGTTTTGTTTTAATAGATCTATTTTTTTTTTTAGAATTTTTAAGATCACAATAGAAGGCGTTTCAAAGTAATAATTCTATGAATGACTATGATTTGATGTGAATCATCCTCGAATGAGGACTAAAGCTCAGCGATGAAAATGGAAAAATAGGGGTGACTTTGTAGTTTAAATTCAAAGATTTTGATCTTACCAAATGTAAGATGTTTCTTCCCTGAATTCATTTTTGAAGAAGAAAGATTTGATTTTAATATACTTAGCCACCCCAGTTTAGTTTAGTCCCATCATAAATAGTCCAATAATAATATTTTATGGATTTTATGACATATGTCACAGTCACCAACCTCAAATACATGTACTCTGTCCAATTTGTCGAAATATATATATTTTTTAATTAAAAATAAAATAATTTTATTTTATTATACTTTTATCTCTATTTTTCATTAAACTAAAATTTAGTTTATGTTGTTATTTTATTAATAATCTTTTTAAAAAAAAATTTGTAATAGATTTCCTTTTTAAATTTAAAAACATATTTATTATTTGTATTTTCATTTAACATAATCTTACTATGAGTTGATTTTTATTATATATAATTTCACCCTTTCTCACTTTTATACTTAATTCAATATTTTGATTGTGAAGTTCAAATATTTTCTGACAAACAATCAATAATCAGAACAAGTAGTTGCTCAAATAAATGGTGAAAATTATTAGAGAAAGGCGATGATTGGAGGTCAATAGAAGTTTGATCCAACAATTTACTGGATGATATAGAAGTTATGAACCAGTATATATCAGAGTTCACAATTGTGGCCATGGATCCCCTCATAGTTATTTTTTGAGTTTTGTTTTACTTATCTGTTTTGGGATTGTAAGATAGGACTACAAGTCGTTTCAAACTAAAAATTCTATTAATGCTTTTGATTTAATGTGAATCGACTGAGCATCCTCGACTCATACTTAGCGATGAGAATGTAAAAATAGAGACTACTCGGGAGTTTAACTTTAGAGATTTTGATCAAATTAGCTATATGGAGGTGTTTGTTCACTACATTCATATCTCAATAACCAGTGATTTGATTTTAATAAATTTAGTAGCCATAAAATTGTTCAACAAGAATTTGTTAGATAGTTTAGCCCTACCTTACAAGTGGTCGAATACAAATAACATTGAATATACGGAAAAATATGGAGAGGTGATGAGTTTAAATAGTGATAAAGTTGTAAAAATAGAAATTGATACATACCCTAAAACGTGAACGGGAACCTATAACACGAAAAATAATATTTATTTATTATTTTTTTTAAATTTATCGTGAAAAATTATAGACCACATGTTTCGTTTATTGAATTATAGACCTCAAACATATAGCTCGGTACACTGACTACCTATTCAATGGCAACCTAGGCTTAAAAATACTCACGAAGTTGCTACAAGTTAATTGCATTGGTACTCAATGACAACCTAGCCTTAAAAAAACGGGTGAAACTGCTCCAAGTTAATCGCATTGTTACTATCCACTTTGTTGGGTCTGACAGTTTGCTTACCGCATTAGTTTATGACAAGATGAAGTAATTTTCAAGGTTTAACCAAAGATATACGAAGACTTTTTATATGCATTACGATATCCCATTCAAGGTTATCGACGACCAGTTGTAATTGTAGATCCATCCAAGTTAAGCGGGTAGCCTTAAAAAAACGGGTGAAACTGCTCCAAGCTAATCGCCTTGTTGCTATCCACTTTGTTGGGTCTGACAGTTCGCTTGCCGCATTAGTTTATGCCAAGATGAAGTAATTTTCAAGGTTAAACCAACGATATACGAAGGCTTTTTATATGCAGTACGATATCTCATTCAAGGTTATCGACAACCAGTTGTAATGGTAGATCCATCCAAATTAAGCGGGTCGTATCTCAACATATTAGATTTTGAAAAATAACTAAATGCTATGGATTTTTTAAACAAAATTAAAAGTTTAATCTTTATTACACTTATAATGTTTATTAATTTAATCTCTATTACACTTTTATCATTTATTTTCGATCGAATGAAAATATAATTTTTGTTGTTATTTTATTATTAATTTGAGTTTACAGGTAAAACTTAAACGTTATTGTGAATGCCTTCCATTTAATGTGAATCATCCTACCATTAGGACTTAGTTTAACTTAAGAGATTTTGGTAGAATTAGCATATAGGAGGTGTTTCTTCATTGAATTAAATGAGAGATTTGATTTTAATAGACTTAGTAGCCCAGTCCAGTTTAGCCCCATCTAAATGGTTGTCGATTATATTTAGTTCATTTTGATGACATAGCTTATCTAATATTAGGCACAGTCACGAACCTCAAACACATGCCACTCTGCCCAATTTGTCTACAAAGATTTTTTTTAATAAAAAAAATTAATTTTTATTATACTTTCATCCTTTATTTTTAATCAAACTAAAATTTAGTATTTGTTATTATTTTATTATTAATTTTAAAAAAAGTTTGTAATAGAATGTAATGTATTTCTATTTTCATTTAAGATAATTTTACCCCTCTCTTGGTTTAGGGGTTGATTTTTATAATAATATCTATAATTTCTCGAAAAAATGGCAAAATTTACCAATTTACATAGAAGTAATGAAGTAGTGTTTACGAGGGTTACCAATTGTGGCCATGGATACATTGTTTTTCAGGTAGGTGTGCCAAGTCATATTTACTGATTTTTTTAGTTTTGTTTGACTAATGTATCTCTCCTTTTAATATTTAAAAAGAGTGTTTTAGATGAAGAATTCTATGAATGCCTTCGATTTAATGTGAATCGACTGAACATTCTCTAATTAGGACTCACATCCAGTAATGAGAATGGAAAAATAAGGATGACTTCCAAGTTTAACTTTCGAGATTTTGATCAAATAAGCATGGAAGGTGTTTTTCACTACATTCATTTCTAAAAACCATTTGATTTCAATTAACTTGAGTACCCATTAATTGCTCCACAGGATTTGGGAGACAGTTTAGCCCTATCACTTTCCAAATACAGAAATGGATAACATTCATGTATTTTATAACATCTTCTATGTATTTGACTTTTGCCAACATAACATGCATGGGTAAGTCTATGGTTATCTTCGCCACCACTATTAGACATTTATTTGAAACAGTTATCGACCTCAAACACATGACTTGTTACAAAAACTATTTATTAGGAAGAATTCGATGAATGCCTCCAATTTAACGTGAATCGACTGAACATCCTCGAATTAGGACTCGCACTCACCAATGAGAATGAAAAAATAGGAAGGAACTAGGAGTTTAATTTTCAAGATTTTGATAAAATTAGGAATATGGGAACGGTTTATTCACTAATTCATCTCTAAAAAAATAAGAGATTTAATTTCAATACAAGTACATATTGAATTGCTCCCCAATAATTTGGTAGACAATTTAACCCTTTAATTCGAAGTGGTAGAATACAGAGATGGATAATTTTTCATGGATATACGACATCGCCTATTTTATGAAGTTTACCAACATAATGTGCATGCCTATGTCCATGTCTATCTTTGCCACCACTGCTACACATCTATTAGGAACAGTCACCGACCTCAAACATATGGCTCGGTACTCCGACTACCTACTCAATGACAATCTAGGCTTAAAAAACTGACGAAGCTACTCTAAGTTAATGGCATTGGTACTTCCCACTTTGCTGAGTTTGATAGTTTGCTTACACCATTATTTTATGCCAAGATAAAATTAATTCTCAAAGTTGAACGAAATATATATGAAGGCTTTTTATATGGATTACGATATCACATTCAAGGTTATCGACGACCCGTTGTAATTGTAGATCCATCTAAGTTAACCCAAGGTCGTATCTCAACATATTAG

mRNA sequence

ATGAAGTTTACCAAAATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACGGCTGCACATTTATTAGGAACAGTCACCGATCTCAAAGATATGGCTCCGTACTCTGACTACCTACTCAATGACAACCGAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTAATGGGTCTGACAGTTTGCTTACCGCATTAGTTTATGTCATGAAGTTCGCTTGCCGCATTAGTTTATGCCAAGATGAAGTAATTTTCAAGGTTAAACCAACGATATACGAAGGCTTTTTATATGCAGTACGATATCTCATTCAAGATCCATCTAAGTTAACCCAAGGTCGTATCTCAACATATTAG

Coding sequence (CDS)

ATGAAGTTTACCAAAATAATGTGCATGCCTACGTCCATGTCTATCTTCGCCACCACGGCTGCACATTTATTAGGAACAGTCACCGATCTCAAAGATATGGCTCCGTACTCTGACTACCTACTCAATGACAACCGAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGGTACTGCCCACTTTAATGGGTCTGACAGTTTGCTTACCGCATTAGTTTATGTCATGAAGTTCGCTTGCCGCATTAGTTTATGCCAAGATGAAGTAATTTTCAAGGTTAAACCAACGATATACGAAGGCTTTTTATATGCAGTACGATATCTCATTCAAGATCCATCTAAGTTAACCCAAGGTCGTATCTCAACATATTAG

Protein sequence

MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIGTAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQDPSKLTQGRISTY

Homology

[Close]

BLAST of CmaCh19G001500 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 9   MPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIGTAHFNGSD 68
           +P +   FAT    + G V D K MA + +  L ++  L KLA++LQ+  +G AH  GSD
Sbjct: 168 LPETHGEFATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSD 227

Query: 69  SLLTALVYV 78
           SL+TALV++
Sbjct: 228 SLMTALVFI 235

[Close]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL
Match: A0A6J1ESM7 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 81/133 (60.90%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKF  I+ MPTSMS+FA  AAHLLGTVTDLK MA YSDYL N N  LKKLAK+LQ+N +G
Sbjct: 166 MKFNNIISMPTSMSMFAMIAAHLLGTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           + +VI KV+P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMKVIMKVEPKIHEGFLYGLPYPIQGYRPPVVI 285

Query: 121 -DPSKLTQGRIST 125
            DPSKLT  RIST
Sbjct: 286 VDPSKLTDDRIST 288

[Close]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL
Match: A0A6J1IIN1 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.5e-30
Identity = 84/131 (64.12%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I+CMPTSMSIFA  AAHLLGTVTDLK MA YSDYLLN N  LKKLAK+LQVN IG
Sbjct: 166 MKFTSIICMPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           +  VI KV P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMRVIMKVDPKIHEGFLYGLPYPIQGYRPPVVI 285

Query: 121 -DPSKLTQGRI 123
            DP KLT  RI
Sbjct: 286 VDP-KLTHNRI 285

[Close]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL
Match: A0A6J1HSR3 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 83/131 (63.36%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I+CMPTSMS FA  AAHLLGTVTDLK MA YSDYLLN N  LKKLAK+LQVN IG
Sbjct: 166 MKFTNIICMPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           +  VI KV P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMRVIMKVDPKIHEGFLYGLPYPIQGYRPPVVI 285

Query: 121 -DPSKLTQGRI 123
            DP KLT  RI
Sbjct: 286 VDP-KLTHNRI 285

[Close]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL
Match: A0A6J1HRD6 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 83/131 (63.36%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I+CMPTSMS FA  AAHLLGTVTDLK MA YSDYLLN N  LKKLAK+LQVN IG
Sbjct: 166 MKFTNIICMPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           +  VI KV P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMRVIMKVDPKIHEGFLYGLPYPIQGYRPRVVI 285

Query: 121 -DPSKLTQGRI 123
            DP KLT  RI
Sbjct: 286 VDP-KLTHNRI 285

[Close]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL
Match: A0A6J1HL76 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463977 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 82/132 (62.12%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I CMPTSMSIFA TAAH+LGTVTDLK MA YS  LL+ N  LKKLAK+LQVN  G
Sbjct: 166 MKFTNIRCMPTSMSIFAITAAHILGTVTDLKHMAWYS--LLDGNLGLKKLAKLLQVNRTG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           + ++I KV+P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMKIIMKVEPNIHEGFLYGLPYPIQGYRRPVVI 285

Query: 121 -DPSKLTQGRIS 124
            DPSKLT GRIS
Sbjct: 286 VDPSKLTDGRIS 285

[Close]

BLAST of CmaCh19G001500 vs. NCBI nr
Match: XP_023550519.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 82/133 (61.65%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKF  I+ MPTSMS+FA  AAHLLGTVTDLK MA YSDYL N N  LKKLAK+LQ+N IG
Sbjct: 164 MKFNNIISMPTSMSMFAIIAAHLLGTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRIG 223

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           + + I KV+P I+EGFLY + Y IQ        
Sbjct: 224 TAHFAGSDSLLTASVY----------AKMKAIMKVEPKIHEGFLYGLPYPIQGYRRPVVI 283

Query: 121 -DPSKLTQGRIST 125
            DPSKLT GRIST
Sbjct: 284 VDPSKLTDGRIST 286

[Close]

BLAST of CmaCh19G001500 vs. NCBI nr
Match: XP_022928830.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 81/133 (60.90%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKF  I+ MPTSMS+FA  AAHLLGTVTDLK MA YSDYL N N  LKKLAK+LQ+N +G
Sbjct: 166 MKFNNIISMPTSMSMFAMIAAHLLGTVTDLKHMARYSDYLFNGNLGLKKLAKLLQINRVG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           + +VI KV+P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMKVIMKVEPKIHEGFLYGLPYPIQGYRPPVVI 285

Query: 121 -DPSKLTQGRIST 125
            DPSKLT  RIST
Sbjct: 286 VDPSKLTDDRIST 288

[Close]

BLAST of CmaCh19G001500 vs. NCBI nr
Match: XP_023511528.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 79/133 (59.40%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT + CMPTSMS+FA +AAH+LGTVTDLK MA YS+ LLN N  LK+LAK+LQVN  G
Sbjct: 166 MKFTYLRCMPTSMSMFAISAAHILGTVTDLKHMARYSNNLLNGNLGLKRLAKLLQVNRTG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA +Y           + ++I KV+P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTAAIY----------AKMKIIMKVEPKIHEGFLYGLPYPIQGYRRPVVI 285

Query: 121 -DPSKLTQGRIST 125
            DPSKLT GRIST
Sbjct: 286 VDPSKLTDGRIST 288

[Close]

BLAST of CmaCh19G001500 vs. NCBI nr
Match: XP_022975238.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 9.3e-30
Identity = 84/131 (64.12%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I+CMPTSMSIFA  AAHLLGTVTDLK MA YSDYLLN N  LKKLAK+LQVN IG
Sbjct: 166 MKFTSIICMPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRIG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           +  VI KV P I+EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTASVY----------AKMRVIMKVDPKIHEGFLYGLPYPIQGYRPPVVI 285

Query: 121 -DPSKLTQGRI 123
            DP KLT  RI
Sbjct: 286 VDP-KLTHNRI 285

[Close]

BLAST of CmaCh19G001500 vs. NCBI nr
Match: XP_023511526.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 80/133 (60.15%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MKFTKIMCMPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIG 60
           MKFT I CMPTSMS+FA +AAH+LGTVTDLK MA YS+ LLN N  LK+LAK+LQVN  G
Sbjct: 166 MKFTYIRCMPTSMSMFAISAAHILGTVTDLKHMARYSNNLLNGNLGLKRLAKLLQVNRTG 225

Query: 61  TAHFNGSDSLLTALVYVMKFACRISLCQDEVIFKVKPTIYEGFLYAVRYLIQ-------- 120
           TAHF GSDSLLTA VY           + ++I KV+P  +EGFLY + Y IQ        
Sbjct: 226 TAHFAGSDSLLTAAVY----------AKMKIIMKVEPKKHEGFLYGLPYPIQGYRRPIVI 285

Query: 121 -DPSKLTQGRIST 125
            DPSKLT GRIST
Sbjct: 286 VDPSKLTDGRIST 288

[Close]

BLAST of CmaCh19G001500 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 9   MPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIGTAHFNGSD 68
           +P +   FAT    + G V D K MA + +  L ++  L KLA++LQ+  +G AH  GSD
Sbjct: 168 LPETHGEFATEVVKVFGQVYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSD 227

Query: 69  SLLTALVYV 78
           SL+TALV++
Sbjct: 228 SLMTALVFI 235

[Close]

BLAST of CmaCh19G001500 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 9   MPTSMSIFATTAAHLLGTVTDLKDMAPYSDYLLNDNRSLKKLAKVLQVNGIGTAHFNGSD 68
           +P +   F+   A +LG+V DLK MA   +  L+    L+ LA    +N +GTAH  GS+
Sbjct: 146 LPVTSERFSKAVARVLGSVYDLKVMAGRCEG-LSSRLGLETLAHEFGLNRVGTAHHAGSN 205

Query: 69  SLLTALVY 77
           + LTA+V+
Sbjct: 206 NELTAMVF 212

The following BLAST results are available for this feature:

BLAST of CmaCh19G001500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	2.0e-06	42.03	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of CmaCh19G001500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESM7	1.5e-30	60.90	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3...	[more]
A0A6J1IIN1	4.5e-30	64.12	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 S...	[more]
A0A6J1HSR3	2.9e-29	63.36	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 S...	[more]
A0A6J1HRD6	2.9e-29	63.36	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 S...	[more]
A0A6J1HL76	2.9e-29	62.12	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463977 PE=3...	[more]

BLAST of CmaCh19G001500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550519.1	1.1e-30	61.65	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022928830.1	3.2e-30	60.90	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_023511528.1	4.2e-30	59.40	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022975238.1	9.3e-30	64.12	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_023511526.1	1.2e-29	60.15	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh19G001500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	1.4e-07	42.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	1.4e-04	38.24	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..104 e-value: 1.1E-9 score: 39.9
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 2..114
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 2..114
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001500.1	CmaCh19G001500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity