CmaCh19G001480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Poly(A)-specific ribonuclease
Location	Cma_Chr19: 977045 .. 979296 (+)
RNA-Seq Expression	CmaCh19G001480
Synteny	CmaCh19G001480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTGCACATTTATTAGAAACAGTCACCGACCTCAAAGATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGGTACTGCTCACTTTATTGGGTCTGATAGTTTGCTTACCGCATCAGTTTAGGTCAAGATGAAGGTAATTCTCAAGGTTGAACTAAAGATATACTAAGGCTTTTTATATGGATTACGATATCCCATTCAAGATTATCGACGATCAGTTGTAATTATAGATCCATCCAAGTTAACCACGGTTGTATCGCAACATATTAGATTAAAAAACTGTGTGCTCCTATGTATAATATATAAATATATATATATTTTCAACTAAAAATTATTTATTTTAAACATTTTTTCAATTTGAAAAATAACTAAATGTTATGTATTTCTTTAAGCAAAATTAAAGGTTTAATATTTATTACACATTCATGTTTATTAATTTAATCTCTATTACACTTTTATCGATATAGTTTTTGTTGTTATTTTATTATTAATTTGAGTTTTAGGATAAAATTTAAACATACTTTTCATTTAATGTAAATCAACCTCTAATTAGAACTCACACTCAGTCCATGAAAATGGAAAAATAGAGATTTTGATCGAATTAGTCAAAGGTATTTTTCACTGCATTCAATTCTAAAAAAATAAGAGAGTTGATTTTAATAGACTGAGCAGCTCAGTCCAGTTTAGCCCGATCCTAAATGGTCGTCGAATACAAATGAGTAACATTTCATCGATTTTATAACATAGTCTATCTAATATTAATCACAGTTACCAACCTCAACCATGACATGTTACTGCCAAATTTATCTAAAAAGATTTTTTTTAATTAAAAATAAAATTAATTTTTATTATAAATTTATTCTTTATTTTTAATCAAACTAAGGTATTTATTGTTATTTTATGATTAATTTTTAAAAATAGTTTGTAATAGATTTCCTTTTAAAATTTTGAAAATATATTTATAGAATGTATTTCTATTTTAATGTGAGATAATCTTACTTCCCTCCCACCTTTGTTTATTGGTTGATTTTTATTATAGTACATCATATAACTTTCCTCACTTCCCTACTCAATTTAATATTTTAATTGTGAAGTTAAAGAAATTTTGTGACAAATCATCTATAATCAGAATAATAATTAATTGTTGAAAAAAATTGCGAAAATTATTAGAGGAGGGGCTATGGTTGGAATTCAATAAAAACGAAATGTTTGGTCTCATAATTTCTAATTTCATTTAACATAACCTTATCTTTGGTTTTAAAGTCGTAGATACCAAGTTTCCAAGTAAAATTTTAAACTTTAAGTTAGGTGCTATTAGTCGCGATTTTTGAGTTTTGTTTTATTGACTTTTGAATGTATTTTCTTTTTAGGATTTTTAAGATGCAGTCGTTTCTTATGAATGCCTTCGATTTGAGTGAATCATCTTCCAATTAGCACTCACACTCAGCTCATCGATGAAAATGGAAAATAGGGATGAATTGGTGGTGAGATTTTGATCAAATTAGAATATCTAAGGTGTTTTTCACCCAATTCATTTCTCAATATGAGATTTGATTTTAATAAACTGACCAGCCAGCCTAATTTAGCCCATCCTAAATAGTCGAATATCACATTCCTAGCCATATTAAGCACGTGACTAACCTCAAACACATGCTTACCCATTTGGCTCCATCATTTTTTAATTGAAGAAAAAAAAAATAATAATAATTTAATTTTTATTACACTCTATGGTAATAAATTTTCTTATTTAATTTGAAAACATATTTTATGGGATGTATTTCTATTTTTTTTTTTTTTTATAATCTTACTTTCATTTCTCTAGTTGATTTTTATAATATATATTTTCACTTCTTCTTACTTTCATACTCAATTCAATATTTTGATTGTGATGTTATGAAATTATCTGACAAACAATCAATAATTAGAACAAGTAGTTATTCAAAAGAAATAGTGAAAATTATTGAAGAAGGGGCGATAGTTAGAGGTCAATGGGAGAGAAATGTTTGGTCTCACGAATCAAATAAAATTTGTGATGCAGTATATATTAGAAGTTTCAACTGTGGCATGAATACCTAGTTTCTAAATAAAACTTAAATGGATAAGTTTGTGCTATACCACATTTAGTTGACTTCGTATTTTTTTTAGTTTTGTTTTTTTTTAGTTTTGTTTTAG

mRNA sequence

ATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTGCACATTTATTAGAAACAGTCACCGACCTCAAAGATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGTCGTAGATACCAAGTTTCCAAGTAAAATTTTAAACTTTAAGTTAGTTTTGTTTTAG

Coding sequence (CDS)

ATGCCTACGTCCATGTCTATCTTCGCCACCACTGCTGCACATTTATTAGAAACAGTCACCGACCTCAAAGATATGGCTCGGTACTCCGACTACCTACTCAATGACAACCTAAGCTTAAAAAAACTGGCGAAGGTGCTCCAAGTTAATGGCATTGTCGTAGATACCAAGTTTCCAAGTAAAATTTTAAACTTTAAGTTAGTTTTGTTTTAG

Protein sequence

MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGIVVDTKFPSKILNFKLVLF

Homology

[Close]

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL
Match: A0A6J1ILC5 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111475640 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMSIFA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL
Match: A0A6J1IIN1 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMSIFA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL
Match: A0A6J1HXB4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL
Match: A0A6J1HSR3 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL
Match: A0A6J1HRD6 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. NCBI nr
Match: XP_022975238.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMSIFA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. NCBI nr
Match: XP_022975694.1 (putative CCR4-associated factor 1 homolog 8, partial [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMSIFA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSIFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. NCBI nr
Match: XP_022967647.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. NCBI nr
Match: XP_022967646.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

[Close]

BLAST of CmaCh19G001480 vs. NCBI nr
Match: XP_022967644.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   MPTSMSIFATTAAHLLETVTDLKDMARYSDYLLNDNLSLKKLAKVLQVNGI 52
           MPTSMS FA  AAHLL TVTDLK MARYSDYLLN NL LKKLAK+LQVN I
Sbjct: 174 MPTSMSNFAIMAAHLLGTVTDLKHMARYSDYLLNGNLGLKKLAKMLQVNRI 224

The following BLAST results are available for this feature:

BLAST of CmaCh19G001480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILC5	5.2e-12	84.31	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111475640 PE=3 S...	[more]
A0A6J1IIN1	5.2e-12	84.31	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111474351 PE=3 S...	[more]
A0A6J1HXB4	3.4e-11	82.35	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467089 PE=3 S...	[more]
A0A6J1HSR3	3.4e-11	82.35	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467090 PE=3 S...	[more]
A0A6J1HRD6	3.4e-11	82.35	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111467091 PE=3 S...	[more]

BLAST of CmaCh19G001480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975238.1	1.1e-11	84.31	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022975694.1	1.1e-11	84.31	putative CCR4-associated factor 1 homolog 8, partial [Cucurbita maxima]	[more]
XP_022967647.1	7.0e-11	82.35	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022967646.1	7.0e-11	82.35	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]
XP_022967644.1	7.0e-11	82.35	putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]	[more]

BLAST of CmaCh19G001480 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001480.1	CmaCh19G001480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity