CmaCh19G001350 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Stress response protein nst1
Location	Cma_Chr19: 849617 .. 849799 (+)
RNA-Seq Expression	CmaCh19G001350
Synteny	CmaCh19G001350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGCCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCAATTGA

mRNA sequence

ATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGCCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCAATTGA

Coding sequence (CDS)

ATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGCCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCTTCCTCTCACGTGCGTCCTCCAATTGA

Protein sequence

MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN

Homology

[Close]

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL
Match: A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
          M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPS  +LL+FPVTLAAVFF LSRASS+
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL
Match: A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
          M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPS  +LL+FPVTLAAVFF LSRASS+
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL
Match: A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 3  ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASS 60
          +N VCG+ SV+++LVV   +LFLPL +G VQPPSA  LLIFP+ L  VF  LSRASS
Sbjct: 35 DNGVCGVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91

[Close]

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL
Match: A0A2J6MK22 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8  GMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRAS 59
          G+GSV+ ML VVGC+LFLPLV+G V PPS  +LLI PV LAAV  FL  AS
Sbjct: 9  GVGSVVAMLFVVGCLLFLPLVMGPVAPPSFPVLLIIPVVLAAVLIFLIHAS 59

[Close]

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL
Match: A0A2P5C9B1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 3  ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASS 60
          +  VCG+ SV+ +LVV   +LFLPL +G VQPPSA  LLI P+ L  VF  LSRASS
Sbjct: 35 DGGVCGVVSVVTILVVAALLLFLPLGMGPVQPPSAFTLLIVPLVLLVVFILLSRASS 91

[Close]

BLAST of CmaCh19G001350 vs. NCBI nr
Match: KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 9.3e-20
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
           MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPS LMLLIFPVTLAAVFF LSRASSN
Sbjct: 52  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111

[Close]

BLAST of CmaCh19G001350 vs. NCBI nr
Match: XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-14
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
          M + SV GMGSVL+MLVVVG +LFLPLVIGS+QPPS L+LLIFPVTLAAVFFFLSRASS+
Sbjct: 1  MEKTSVFGMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRASSH 60

[Close]

BLAST of CmaCh19G001350 vs. NCBI nr
Match: XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
          M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPS  +LL+FPVTLAAVFF LSRASS+
Sbjct: 1  MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of CmaCh19G001350 vs. NCBI nr
Match: XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLSRASSN 60
          M E  V GMGSVLIMLVVVG +L LPLVIGS+QPPS  +LL+FPVTLAAVFF LSRASS+
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60

[Close]

BLAST of CmaCh19G001350 vs. NCBI nr
Match: KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFLS 56
          M E  V GMGSVLIMLVVVG +L LPLVIGS+QPPS  +LL+FPVTLAAVFF LS
Sbjct: 1  MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55

[Close]

BLAST of CmaCh19G001350 vs. TAIR 10
Match: AT4G14315.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 2.6e-04
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 8  GMGSVLIMLVVVGCILFLPLVIGSVQPPSALMLLIFPVTLAAVFFFL 55
          GMGSVL ++VV   +LF+PL++G V  PS  M+L+FPV L  VF +L
Sbjct: 8  GMGSVLAIVVVALMLLFVPLMMGPVTAPSLPMILMFPVVLLFVFLYL 54

The following BLAST results are available for this feature:

BLAST of CmaCh19G001350 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8Q7	1.4e-13	78.33	Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BHY2	1.4e-13	78.33	uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=...	[more]
A0A2P5EXP0	7.5e-07	61.40	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV...	[more]
A0A2J6MK22	1.8e-05	66.67	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1	[more]
A0A2P5C9B1	4.1e-05	57.89	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE...	[more]

BLAST of CmaCh19G001350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011309.1	9.3e-20	96.67	hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038888108.1	3.4e-14	81.67	uncharacterized protein LOC120078008 [Benincasa hispida]	[more]
XP_008447644.1	2.9e-13	78.33	PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str...	[more]
XP_011652820.1	1.9e-12	76.67	uncharacterized protein LOC105435116 [Cucumis sativus]	[more]
KAE8650841.1	5.1e-10	76.36	hypothetical protein Csa_017605, partial [Cucumis sativus]	[more]

BLAST of CmaCh19G001350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14315.1	2.6e-04	53.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001350.1	CmaCh19G001350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane