CmaCh19G001120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G001120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HTH myb-type domain-containing protein
Location	Cma_Chr19: 676761 .. 677015 (-)
RNA-Seq Expression	CmaCh19G001120
Synteny	CmaCh19G001120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTTTAGGGTTAAGTTCATGGAAACGGCAATTCATGAAGCTTGGGAACAGAATCGCAAATTCTGGCTCTGCAATTCCTTATATGAGTGACCCCAAAACCCCAAGTTCTTGCTGTTCTTCCTTCAAACACTCGATTTTCAAGCTCAAATCACAGTGGAAGAACAGTTTGAGATGGAAAAACAGGACAGTTCAGTACAGTTATGATCTTCACAGCTACTCTCTTAACTTTGATGATGGCTTGCTTCATTGA

mRNA sequence

ATGAAGGTTTTAGGGTTAAGTTCATGGAAACGGCAATTCATGAAGCTTGGGAACAGAATCGCAAATTCTGGCTCTGCAATTCCTTATATGAGTGACCCCAAAACCCCAAGTTCTTGCTGTTCTTCCTTCAAACACTCGATTTTCAAGCTCAAATCACAGTGGAAGAACAGTTTGAGATGGAAAAACAGGACAGTTCAGTACAGTTATGATCTTCACAGCTACTCTCTTAACTTTGATGATGGCTTGCTTCATTGA

Coding sequence (CDS)

ATGAAGGTTTTAGGGTTAAGTTCATGGAAACGGCAATTCATGAAGCTTGGGAACAGAATCGCAAATTCTGGCTCTGCAATTCCTTATATGAGTGACCCCAAAACCCCAAGTTCTTGCTGTTCTTCCTTCAAACACTCGATTTTCAAGCTCAAATCACAGTGGAAGAACAGTTTGAGATGGAAAAACAGGACAGTTCAGTACAGTTATGATCTTCACAGCTACTCTCTTAACTTTGATGATGGCTTGCTTCATTGA

Protein sequence

MKVLGLSSWKRQFMKLGNRIANSGSAIPYMSDPKTPSSCCSSFKHSIFKLKSQWKNSLRWKNRTVQYSYDLHSYSLNFDDGLLH

Homology

[Close]

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL
Match: A0A0A0L8W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608720 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1  MKVLGLSSWKRQFMKLGNRIANSG---SAIPYM--SDPKTPSSCCS----SFKHSIFKLK 60
          MK LG S WK QFMKLGNRIANSG   S+IPY+     K P  CCS    SFKH I KLK
Sbjct: 1  MKFLGFSLWKWQFMKLGNRIANSGSSSSSIPYVVSDTQKPPCFCCSSSSPSFKHLILKLK 60

Query: 61 SQWK-NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
          SQWK ++LRW+N TV+YSYDL SYSLNFDDGLLH
Sbjct: 61 SQWKHHNLRWQNSTVRYSYDLQSYSLNFDDGLLH 94

[Close]

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL
Match: A0A061DPJ4 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_003929 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1   MKVLGLSSWKR-QFMKLGNRIANSGSAIPYMSDPKTPSSCC--SSF--KHSIFKLKSQWK 60
           +K+L +   KR QF+K   +IAN G A+  +S    P+ CC   SF  K  ++KLKSQW+
Sbjct: 460 LKILKMQGLKRIQFLKWEKKIANDGYAVKLISVQSRPTLCCRLKSFVLKQFVWKLKSQWR 519

Query: 61  NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
            +LR +  ++Q+SYDLHSYSLNFDDG  H
Sbjct: 520 QALRLQRSSMQFSYDLHSYSLNFDDGFTH 548

[Close]

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL
Match: B9SKN8 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0542820 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1   MKVL-GLSSWKRQFMKLGNRIANSGSAIPYMS-DPKTPSSCCSS---FKHSIFKLKSQWK 60
           MK+L G S  K QF+K G RIA + SAI   +   + P SCC      +  ++K ++QWK
Sbjct: 24  MKILSGQSVKKNQFIKWGKRIATTESAITLGNVRNRVPFSCCCGLRVLRQLLWKFRTQWK 83

Query: 61  NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
            +L W+  +V+YSYD+HSYSLNFDDGL H
Sbjct: 84  QALGWRRNSVKYSYDIHSYSLNFDDGLYH 112

[Close]

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL
Match: A0A2N9IXX4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57087 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 12 QFMKLGNRIANSGSAIPYMSDPKTPS-SCCSS---FKHSIFKLKSQWKNSLRWKNRTVQY 71
          QF KLG RIA++GSA    SD +  S  CC      +  ++K KSQWK + R +  + QY
Sbjct: 2  QFFKLGKRIASTGSASTLGSDKRKASLDCCHGSYVLRQLLWKFKSQWKQAFRRQRSSAQY 61

Query: 72 SYDLHSYSLNFDDGLLH 85
          SYDLHSYSLNFDDGL +
Sbjct: 62 SYDLHSYSLNFDDGLFN 78

[Close]

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL
Match: A0A6A1VJQ4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G024638 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MKVLGLSSWKR-QFMKLGNRIANSGSAIPYMSDPKTP-SSCC---SSFKHSIFKLKSQWK 60
          MK+  +SS +R +F+KL  RIA++GSA+  +S  +     CC   +  +  ++K KS WK
Sbjct: 1  MKISSISSLRRMEFLKLRKRIASTGSAVTVVSAKRRALLDCCRGSNLLRQLVWKFKSGWK 60

Query: 61 NSLRWKNRTVQYSYDLHSYSLNFDDG 82
           +L W+    QYSYDLHSYSLNFDDG
Sbjct: 61 QNLGWQRSKAQYSYDLHSYSLNFDDG 86

[Close]

BLAST of CmaCh19G001120 vs. NCBI nr
Match: KAG6606355.1 (hypothetical protein SDJN03_03672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-24
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MKVLGLSSWKRQFMKLGNRIANSGSAIPYMSDPKTPS-SCCSSFKHSIFKLKSQWKNSLR 60
          MKVLG S WK QF++LGNRIANSGS+I Y+ D KTP  SC SS +H I KLK QWK++LR
Sbjct: 1  MKVLGFSLWKWQFLRLGNRIANSGSSISYVGDSKTPPLSCSSSLRHLILKLKYQWKHNLR 60

Query: 61 WKNRTVQYSYDLHSYSLNFDDGLLH 85
           + RTVQYSYDL SYSLNFDDGLLH
Sbjct: 61 LQKRTVQYSYDLQSYSLNFDDGLLH 85

[Close]

BLAST of CmaCh19G001120 vs. NCBI nr
Match: KGN58293.1 (hypothetical protein Csa_017624 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1  MKVLGLSSWKRQFMKLGNRIANSG---SAIPYM--SDPKTPSSCCS----SFKHSIFKLK 60
          MK LG S WK QFMKLGNRIANSG   S+IPY+     K P  CCS    SFKH I KLK
Sbjct: 1  MKFLGFSLWKWQFMKLGNRIANSGSSSSSIPYVVSDTQKPPCFCCSSSSPSFKHLILKLK 60

Query: 61 SQWK-NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
          SQWK ++LRW+N TV+YSYDL SYSLNFDDGLLH
Sbjct: 61 SQWKHHNLRWQNSTVRYSYDLQSYSLNFDDGLLH 94

[Close]

BLAST of CmaCh19G001120 vs. NCBI nr
Match: EOX94342.1 (Uncharacterized protein TCM_003929 isoform 1 [Theobroma cacao])

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1   MKVLGLSSWKR-QFMKLGNRIANSGSAIPYMSDPKTPSSCC--SSF--KHSIFKLKSQWK 60
           +K+L +   KR QF+K   +IAN G A+  +S    P+ CC   SF  K  ++KLKSQW+
Sbjct: 460 LKILKMQGLKRIQFLKWEKKIANDGYAVKLISVQSRPTLCCRLKSFVLKQFVWKLKSQWR 519

Query: 61  NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
            +LR +  ++Q+SYDLHSYSLNFDDG  H
Sbjct: 520 QALRLQRSSMQFSYDLHSYSLNFDDGFTH 548

[Close]

BLAST of CmaCh19G001120 vs. NCBI nr
Match: EEF35835.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1   MKVL-GLSSWKRQFMKLGNRIANSGSAIPYMS-DPKTPSSCCSS---FKHSIFKLKSQWK 60
           MK+L G S  K QF+K G RIA + SAI   +   + P SCC      +  ++K ++QWK
Sbjct: 24  MKILSGQSVKKNQFIKWGKRIATTESAITLGNVRNRVPFSCCCGLRVLRQLLWKFRTQWK 83

Query: 61  NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
            +L W+  +V+YSYD+HSYSLNFDDGL H
Sbjct: 84  QALGWRRNSVKYSYDIHSYSLNFDDGLYH 112

[Close]

BLAST of CmaCh19G001120 vs. NCBI nr
Match: XP_002526557.2 (uncharacterized protein LOC8266481 [Ricinus communis])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1  MKVL-GLSSWKRQFMKLGNRIANSGSAIPYMS-DPKTPSSCCSS---FKHSIFKLKSQWK 60
          MK+L G S  K QF+K G RIA + SAI   +   + P SCC      +  ++K ++QWK
Sbjct: 5  MKILSGQSVKKNQFIKWGKRIATTESAITLGNVRNRVPFSCCCGLRVLRQLLWKFRTQWK 64

Query: 61 NSLRWKNRTVQYSYDLHSYSLNFDDGLLH 85
           +L W+  +V+YSYD+HSYSLNFDDGL H
Sbjct: 65 QALGWRRNSVKYSYDIHSYSLNFDDGLYH 93

[Close]

BLAST of CmaCh19G001120 vs. TAIR 10
Match: AT5G44005.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-05
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 12 QFMKLGNRIANSGSAIPYMSDPKTPS------SCCSS----FKHSIFKLKSQWKNSLRWK 71
          QF + G RI +S +A   + + +  +      SCC       K  +++LKS+ + S +  
Sbjct: 10 QFRRWGKRIGSSTTASATLGNTEERTIVAFAFSCCGKPRVLVKQFVWRLKSRLRWSRKSD 69

Query: 72 NRTVQYSYDLHSYSLNFDDG 82
          +  +Q SYDL SY LNFDDG
Sbjct: 70 HNNIQCSYDLRSYHLNFDDG 89

The following BLAST results are available for this feature:

BLAST of CmaCh19G001120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G001120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8W7	1.8e-22	68.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608720 PE=4 SV=1	[more]
A0A061DPJ4	4.9e-12	48.31	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_003929 PE=4 ...	[more]
B9SKN8	1.1e-11	48.31	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0542820 PE=4 SV=1	[more]
A0A2N9IXX4	1.6e-10	51.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57087 PE=4 SV=1	[more]
A0A6A1VJQ4	3.5e-10	46.51	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G024638 PE=4 SV=1	[more]

BLAST of CmaCh19G001120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606355.1	3.0e-24	71.76	hypothetical protein SDJN03_03672, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN58293.1	3.7e-22	68.09	hypothetical protein Csa_017624 [Cucumis sativus]	[more]
EOX94342.1	1.0e-11	48.31	Uncharacterized protein TCM_003929 isoform 1 [Theobroma cacao]	[more]
EEF35835.1	2.2e-11	48.31	conserved hypothetical protein [Ricinus communis]	[more]
XP_002526557.2	2.2e-11	48.31	uncharacterized protein LOC8266481 [Ricinus communis]	[more]

BLAST of CmaCh19G001120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44005.1	5.7e-05	35.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR34538:SF4	EXPRESSED PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G001120.1	CmaCh19G001120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
cellular_component	GO:0110165	cellular anatomical entity