CmaCh19G000710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 408068 .. 409886 (-)
RNA-Seq Expression	CmaCh19G000710
Synteny	CmaCh19G000710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTGATAGCCTACTTTGGTTCCTACTTTGCAAAAATAATAAATTTGTCCAAGACTGAGTCTAGCCTTGACGTTAAAATTGTCAAGAGTCGAACCAATGCTGACGAAATTAGTCTCATAGGCTCATGTGTTTCGTGGAAGAAAGTTAACAAAAAATTTCTCTGAGTTTTGACCCAATAAAAATTCTAGCTTCTTAACTTAAAAAGCTAACAAACATTGTTTGCTTTGGTTCATTACGTATCGCCGTCAGGTCATACACGTCTTGTAGGGAGAAGTTTCTACATGTTTATAAGAAATGATTTGTTCCACTCTCCAATCGAAGCGGGATCTCACTTGTCCAGAGAGAACAATATCTGCTAGCGGTGGACTTAGGCTATTACAAATGATATTAGAACCATACACCAGGTGGTGTTCTAGCGAGGACACTCGCTAGGCTCCCCTCCTCGCTGGGCTCCCAATACAGTAGATTGTGAGATCGCATGTCTGTTGGAGAGAAACTAATAATTTATGTGAAGAATCTCTCCGTACTAGATGTGTTTTAAAACCTTGAGAGAAAGTCTAAAGGAGAAGTCCCAATTTTAAGGTTGCCAACCCAAAAGCTGTTTCCCAATTTTAAGGTTAAATTATAAGAGTTGTGTTTCTTAAAATCTTAAACTTTAAAAAATGTCTATAAGTCCACAACTTTCAATTTTGTATCTTATACATCTTTAACATGTTCAACATTATAAAAAAATAACTGATATATCTATGATATAAAGTTGAAATTTATTTCGAACGAAACTCCGAACTATCAATATTTATGTCTTGTTCATGCATTTTAAAATAGGTTGAATAGGTTAAAGCTTAAAGGTCTATTAAATATTAAATTAAAATTTTAATTACCGTTGTTCATAGAGAAACTTTATCAATTTTTTTTTGAAAATTCACGAACCAGGTAGATATAAACTTTGGTACTAAACATGTAATTTAACCTAATTTTAAATTTCAAATAGCAAGATTCAAAATATTCTTCAGCTTTGTTGATTCCAAATAAAGGATCCAAGCAAAAGAGGAAAAAAAAAAAATTGGTGCAAAACTCGTGAGATCTCAAGTTGGTTTGGGGAGGAGAATGAAGCATTTCTTATGGGCTTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAACCTTGAGCTGATAGCGATACGTAACAAGCCAAAACGGACAATATCTGTTAGCTATAAACTTGAGCTGTTACAATACAACGATACCTATCAAGTCAAAACGAATTACAAAACTAGTCTAGAAGTCTCGTTTTATCGTGTGTAATTTTTTTCCCAAGAAATTAAACCTTCAATTTCTTGGACTTTGACCCAACCAAATTCTGGCTTGTTTTACCTTCTCAAATGCCCTAGACTTAATATTCAATATTTGGTTTTGTATAAATAGAACACAAACCATTTCATCAAATTTCACCATAACTATCAAATTCAACAATCTCCCTTAATCTTTCATTTCAATCACCACAAAACCCTCTTCTCCTTTCTCAAAATGAAGATCCAATTTGCATTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCTTCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCCAAAATGGCGGCACTACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCAGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

mRNA sequence

ATGCATGTGATAGCCTACTTTGGTTCCTACTTTGCAAAAATAATAAATTTGTCCAAGACTGAGTCTAGCCTTGACGTTAAAATTGTCAAGAGTCGAACCAATGCTGACGAAATTAGTCTCATAGGCTCATGTGTTTCGTGGAAGAAAAACACAAACCATTTCATCAAATTTCACCATAACTATCAAATTCAACAATCTCCCTTAATCTTTCATTTCAATCACCACAAAACCCTCTTCTCCTTTCTCAAAATGAAGATCCAATTTGCATTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCTTCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCCAAAATGGCGGCACTACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCAGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Coding sequence (CDS)

ATGCATGTGATAGCCTACTTTGGTTCCTACTTTGCAAAAATAATAAATTTGTCCAAGACTGAGTCTAGCCTTGACGTTAAAATTGTCAAGAGTCGAACCAATGCTGACGAAATTAGTCTCATAGGCTCATGTGTTTCGTGGAAGAAAAACACAAACCATTTCATCAAATTTCACCATAACTATCAAATTCAACAATCTCCCTTAATCTTTCATTTCAATCACCACAAAACCCTCTTCTCCTTTCTCAAAATGAAGATCCAATTTGCATTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCTTCTCCAAAGTTGCAGAACCATGAAAGAGGATCCACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCCAAAATGGCGGCACTACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCAGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Protein sequence

MHVIAYFGSYFAKIINLSKTESSLDVKIVKSRTNADEISLIGSCVSWKKNTNHFIKFHHNYQIQQSPLIFHFNHHKTLFSFLKMKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIPVPLGQRAFVRKSTPSPAHSYHHQVPVPFGVAMKTN

Homology

[Close]

BLAST of CmaCh19G000710 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQF F  AILV+LANAH LQSCRTMK+D +KWS +L+QQSLQRAPVPPS ++G T IP
Sbjct: 1   MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGVAMKTN 179
           VPLGQ+AF  KST  PA      + VP GVA+KTN
Sbjct: 61  VPLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

[Close]

BLAST of CmaCh19G000710 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSI--LLLQQSLQRAPVPPSAQNGGTT 143
           MKIQF+FLLAILV+LAN H LQSCRT+K+D Q WSI   LLQQSLQR PVPPSA+NG T 
Sbjct: 1   MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 144 IPVPLGQRAFVRKSTPSPAHSY 164
           IPVP+GQRAF  K++ + A +Y
Sbjct: 61  IPVPVGQRAFAGKTSAALARNY 82

[Close]

BLAST of CmaCh19G000710 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-41
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQFAFLLAILVVLANAH LQSCRTMKED QKWSILLLQQSLQRAPVPPSA+NGGTTIP
Sbjct: 1   MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGVAMKTN 179
           VPLGQR+FV KSTPSPAHSYHHQVPVPFGVAM TN
Sbjct: 61  VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

[Close]

BLAST of CmaCh19G000710 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-40
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQFAFLLAILVVLANAH LQSCRTMKEDPQKWSILLLQQSLQRAPVPP+A+NGGTTIP
Sbjct: 1   MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGV-AMKTN 179
            PLGQRAFV KSTPSPAHSYHHQVPVP GV AMKTN
Sbjct: 61  TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

[Close]

BLAST of CmaCh19G000710 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-39
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQFAFLLAILVVLANAH LQSCRTMKED QKWSILLLQQSL+R PVPPSAQNGGTTIP
Sbjct: 1   MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGVAMKTN 179
             LGQRAFV KSTPSPAHSYHHQVPVPFGVAM TN
Sbjct: 61  TQLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

[Close]

BLAST of CmaCh19G000710 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-39
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQFAFLLAI+V+LANAH LQSCRTMK+D QKWSI LLQQSLQRAPVPPSA+NGGTTIP
Sbjct: 1   MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSI-LLQQSLQRAPVPPSAKNGGTTIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGVAMKTN 179
           VPLGQRAFV KSTPSPAHSYHHQVPVPFGVAMKTN
Sbjct: 61  VPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

[Close]

BLAST of CmaCh19G000710 vs. NCBI nr
Match: KAG6571502.1 (hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 9.5e-36
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 84  MKIQFAFLLAILVVLANAHLLQSCRTMKEDPQKWSILLLQQSLQRAPVPPSAQNGGTTIP 143
           MKIQFAFLLAILVVLANAH LQSCRTMKEDPQKWSI  LQ+SLQ APVPP+A+NGGTTIP
Sbjct: 1   MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSI--LQRSLQSAPVPPNAKNGGTTIP 60

Query: 144 VPLGQRAFVRKSTPSPAHSYHHQVPVPFGV-AMKTN 179
            P GQRAFV KSTPSPAHSYHHQVPVP GV AMKTN
Sbjct: 61  TPPGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 94

The following BLAST results are available for this feature:

BLAST of CmaCh19G000710 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B777	2.4e-24	67.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCY5	1.6e-20	69.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1	[more]

BLAST of CmaCh19G000710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571503.1	4.4e-41	93.68	hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571504.1	3.7e-40	92.71	hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571501.1	1.4e-39	91.58	hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571505.1	4.1e-39	91.58	hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571502.1	9.5e-36	87.50	hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh19G000710 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000710.1	CmaCh19G000710.1	mRNA