CmaCh19G000640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 363111 .. 365506 (+)
RNA-Seq Expression	CmaCh19G000640
Synteny	CmaCh19G000640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAATGCGACGGCCTCGATGGAATCGTAGCTTACCCCGTTACCGGGTCTGCATCTCTGCAGTGAGTGGCCCGGGGACTTTCCTGAGCCCATTAAACCTTATCGGAACAACTGGCCCAATCACTTCGTTCCACGGTTGGTTGCACTTTACTTTGGAAACAGCACTTATATAGTAGCGCACATTCGCCAACCTTTCCGATGTGGTACAACCTAAGATAACAATTTAACCAATTTAATCCCTTATTCTTTATATTTGTGTTTATTTTATTTTTAAATTTTAAAAATTATATGATACGTTATTAAATTTTATACTCGATGATGGTCATAGATATATTTACATAAAATTCTAAATTTCAAATTTTATATTTAGTATTTCCATCAACTTTAAAATTTATTAAATAAGTTAAAAAAAGTACTTATTAAAAATACCTTTAAATTAATTTTTTTTTAAAAATATTTTTATTATTAGTATAAGATGAAAATTGCTAATGAAAAAAAAAAAATTGCTAATTATTTTTAACATTTATAAAAAAAAATTTACTAATGAAAATTGATTTTCTCATTTTTTTAATTAAAGTATTAATACTGTCCTTATTTGGCCACTCCGTACGAAGGAAATACAGTTTTCTCCTCCAACGGTTTTAGCCAAACGCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATTTTATCTCTCCTTTTCGTTGCTTCCCGATCATCCTCCACCTTCAAACAAGGTAACTATATTTCCATTACATACCATTTCATCATCAAAATTTGTATTGATTCATATAGCATTTGAGCTTTCTTCTGGGTTCTATTGCTTCTGATTTTTGTTTGGTGGGTTGCGATTCTTCTGATTACTCTCCCCAGTTTCATTGATTTTCTTCAATGTTCATACAAATTGGTATTTGGGTTTCTGTTGGATCAGGAAATCTTATGCATTGTCGTATTCAATCTGGTTTTTTCTGTTCTTTCTTGTTAACTTAATCGTTGGTTGATTCATGGCCTAATATCGAACGTTTTGAGATTGGGGTTGCCCTTTTTTCTTCTCATTTTGCTTTCAGATTACCTGCTGCATTCTAGCATGATTTGGAGGTCTGTATTGCCGTATTGTTCTTCAATCCACTTTTAGAGCGTTACATCTAGAACAACTTTAAATCAATTTCCTCTCTCTCCCACGAAGAAAAGAAAATTCTCTATGAGAACTCATTCTTCTGTTTTAGGTGTAATGAATATATTGTAATTTTTCTCCAATACCCACATGAATGAGGAGTCGGTTTGATTTGTGTTCTTGAAAATCTCTGTTTTCTTACTAGTTTTCCTTGCATTCATCTTATTTTTCCCCCTATTCTTTTTCTTGTAATGTATTCCATGGTAGGTGGATTTTTTCTGTAATGGTCTAAGACCATTACTAGCAGATATTGTTAGTTTTTAGCTTTCCTTTCTGAGATTTCGATTTCCCTTTTCTACTAGGGAGAGGTTTCTAGACCTTTATAAGAAATGTTTCGTTTCCCTCTCCAACGATGTGGGATCTCACAATCCGCCCCCCTTGGTGGCCTAGCGTCCTAACTGGCACATCGCTCGGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCTCATCGTTAGCAGCTATTGTCCGCTTTGGTCTGTTACGTATCGTTGTCAGCCTCATGGTTTTAAAACCCGTCTACTATGGAGAGAGTCTAGCCCTACTTCGACTAGTGCATCGCACCGTTTGGTGACTGGTTCTAATACCATTTGTGCCAGTGAGGATGCCGAGTCTCGAAGGGGGTGGATTTGTTAGAAATCATGAACCTCCGCAATGGTATGATATTGTCCACTTTGAGCATAGTTTCTCAGGGCTTTGCTTTGGGCTTTTCCAGAAGACCTCATACCAATGGAGATGTATTCCTTACATATAAACCCATGATCATTCCCTAAATTAGCCAACGTGGGACTCCCTCCTAACAATCCTCAACAGGATTGTGAGATCCCACATCGATTGGAGAGAAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTTTCCCCAGAGGACACACATTAAAACTTTGAGGGAAAGTCTGGAAGGAAAAATCTAAAGAGGACAATATTTGCTAGCGGTGGACTTGAACTATTACATTGTCCACTTCATTGCAATAATAGTGATCAGGATAAGCCATCCATTACTTTTGTTGATTCAAGGTCTTCACCTTTAGAACCATATGCTGTGCAGGTTGATGTGCAAAAGCCCCATGACGTGATATCTCTTGCTTGTGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

mRNA sequence

ATGGTGCAATGCGACGGCCTCGATGGAATCGTAGCTTACCCCGTTACCGGTATTAATACTGTCCTTATTTGGCCACTCCGTACGAAGGAAATACAGTTTTCTCCTCCAACGGTTTTAGCCAAACGCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATTTTATCTCTCCTTTTCGTTGCTTCCCGATCATCCTCCACCTTCAAACAAGGTTGATGTGCAAAAGCCCCATGACGTGATATCTCTTGCTTGTGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

Coding sequence (CDS)

ATGGTGCAATGCGACGGCCTCGATGGAATCGTAGCTTACCCCGTTACCGGTATTAATACTGTCCTTATTTGGCCACTCCGTACGAAGGAAATACAGTTTTCTCCTCCAACGGTTTTAGCCAAACGCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATTTTATCTCTCCTTTTCGTTGCTTCCCGATCATCCTCCACCTTCAAACAAGGTTGATGTGCAAAAGCCCCATGACGTGATATCTCTTGCTTGTGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

Protein sequence

MVQCDGLDGIVAYPVTGINTVLIWPLRTKEIQFSPPTVLAKRFFLIPIPLESVVPNQFYLSFSLLPDHPPPSNKVDVQKPHDVISLACDAATFHGLNKLNWLPWPANPTANPSTWAELI

Homology

[Close]

BLAST of CmaCh19G000640 vs. ExPASy TrEMBL
Match: A0A6J1CWS2 (probable myosin-binding protein 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015290 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 48  IPLESVVPN--QFYLSFSLLPDHPPPSN---KVDVQKPHDVISLACDAATFHGLNKLNWL 107
           IPL+    N  Q   S + +   P P     +VDVQKPH+V SLA DA TFHGL++LNWL
Sbjct: 278 IPLKPHCNNCDQVKPSINFVGSRPSPLESYVQVDVQKPHNVKSLASDATTFHGLSELNWL 337

Query: 108 PWPANPTANPSTWAELI 120
           PWPANPTA+PST  ELI
Sbjct: 338 PWPANPTADPSTLPELI 354

[Close]

BLAST of CmaCh19G000640 vs. ExPASy TrEMBL
Match: A0A6J1EYC7 (probable myosin-binding protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111437336 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.9e-11
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 74  KVDVQKPHDVISLACDA-ATFHGLNKLNWLPWPANPTANPSTWAELI 120
           +VDVQKPHDV   ACDA A FHGL++LNWLP P NP A+PSTWAELI
Sbjct: 304 QVDVQKPHDVTLPACDANANFHGLSELNWLPRPDNPIASPSTWAELI 350

[Close]

BLAST of CmaCh19G000640 vs. NCBI nr
Match: KAG6571491.1 (hypothetical protein SDJN03_28219, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/87 (85.06%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 34  SPPTVLAKRFFLIPIPLESVVPNQFYLSFSL-LPDHPPPSNKVDVQKPHDVISLACDAAT 93
           S P      FFLIPIPLESVVPNQ  L  SL LPD PPPSNKVDVQKPHDVISLACDAAT
Sbjct: 9   SLPRYRPNAFFLIPIPLESVVPNQSLLLLSLFLPDRPPPSNKVDVQKPHDVISLACDAAT 68

Query: 94  FHGLNKLNWLPWPANPTANPSTWAELI 120
           FHGLNKLNWLPWPANPTANPSTWAELI
Sbjct: 69  FHGLNKLNWLPWPANPTANPSTWAELI 95

[Close]

BLAST of CmaCh19G000640 vs. NCBI nr
Match: KAG7011253.1 (hypothetical protein SDJN02_26157, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-27
Identity = 66/78 (84.62%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 43  FFLIPIPLESVVPNQFYLSFSL-LPDHPPPSNKVDVQKPHDVISLACDAATFHGLNKLNW 102
           FFLIPIPLESVVPNQ  L  SL LPD PPPSN     KPHDVISLA DAATFHGLNKLNW
Sbjct: 4   FFLIPIPLESVVPNQSLLLLSLFLPDRPPPSN-----KPHDVISLAWDAATFHGLNKLNW 63

Query: 103 LPWPANPTANPSTWAELI 120
           LPWPANPTANPSTWAELI
Sbjct: 64  LPWPANPTANPSTWAELI 76

[Close]

BLAST of CmaCh19G000640 vs. NCBI nr
Match: XP_038888666.1 (probable myosin-binding protein 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 48/77 (62.34%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 48  IPLESVVPN--QFYLSFSLLPDHPPPSN---KVDVQKPHDVISLACDAATFHGLNKLNWL 107
           IPL+    N  Q   S + +   P P     +VDVQKPHDV SL  D ATFHGLN+LNWL
Sbjct: 278 IPLKPHCNNCDQVKRSINFVDPRPSPLESYVQVDVQKPHDVKSLPGD-ATFHGLNELNWL 337

Query: 108 PWPANPTANPSTWAELI 120
           PWPANPTANPSTWAELI
Sbjct: 338 PWPANPTANPSTWAELI 353

[Close]

BLAST of CmaCh19G000640 vs. NCBI nr
Match: XP_023534520.1 (probable myosin-binding protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 74  KVDVQKPHDVISLACDAATFHGLNKLNWLPWPANPTANPSTWAELI 120
           KVDVQKPHDV SLACD A FHGL++LNWLP P NP ANPSTWAELI
Sbjct: 3   KVDVQKPHDVTSLACD-ANFHGLSELNWLPRPDNPIANPSTWAELI 47

[Close]

BLAST of CmaCh19G000640 vs. NCBI nr
Match: XP_022145952.1 (probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145953.1 probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145954.1 probable myosin-binding protein 4 isoform X1 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 48  IPLESVVPN--QFYLSFSLLPDHPPPSN---KVDVQKPHDVISLACDAATFHGLNKLNWL 107
           IPL+    N  Q   S + +   P P     +VDVQKPH+V SLA DA TFHGL++LNWL
Sbjct: 278 IPLKPHCNNCDQVKPSINFVGSRPSPLESYVQVDVQKPHNVKSLASDATTFHGLSELNWL 337

Query: 108 PWPANPTANPSTWAELI 120
           PWPANPTA+PST  ELI
Sbjct: 338 PWPANPTADPSTLPELI 354

The following BLAST results are available for this feature:

BLAST of CmaCh19G000640 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWS2	1.1e-12	57.14	probable myosin-binding protein 4 isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1EYC7	9.9e-11	74.47	probable myosin-binding protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111437336 ...	[more]

BLAST of CmaCh19G000640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571491.1	2.9e-33	85.06	hypothetical protein SDJN03_28219, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011253.1	7.0e-27	84.62	hypothetical protein SDJN02_26157, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038888666.1	4.0e-14	62.34	probable myosin-binding protein 4 isoform X1 [Benincasa hispida]	[more]
XP_023534520.1	1.7e-12	82.61	probable myosin-binding protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022145952.1	2.2e-12	57.14	probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145953...	[more]

BLAST of CmaCh19G000640 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000640.1	CmaCh19G000640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0080115	myosin XI tail binding