CmaCh19G000630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	histone H1-like
Location	Cma_Chr19: 351666 .. 352759 (+)
RNA-Seq Expression	CmaCh19G000630
Synteny	CmaCh19G000630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACTATTTAAGCCTAAACATTTTAGCCAAATCCCTCAACGAAATTACCAGTAACATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCCAAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTGTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCTGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGGGAAGTCGAAGAAATCCAAAGAATCTAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGGTGTGTTGCTGAATTGAGTTTGGAGTTTAGAACAGAATTTTCTTTTGGATTCATGTCTGGTGTAATGGATCTGTTTTGTTGATTTGGTTTGATGTTTTGATTTCAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTGCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCAGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCAGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTAGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCGAAACCGGCGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCTGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAA

mRNA sequence

CGACTATTTAAGCCTAAACATTTTAGCCAAATCCCTCAACGAAATTACCAGTAACATTTCATATAGCTCTCTCGTTTCTCTAGATCCCAATTTTTGTTCCGATCATCTTTCCATTTCCAAATTCTACTTCTGGTTTGTGGAATTTGATCTTGTTTCTACATCAATGGCTACTGAGGAGCCAGTTGTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCTGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGGGAAGTCGAAGAAATCCAAAGAATCTAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTGCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCAGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCAGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTAGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCGAAACCGGCGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCTGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAA

Coding sequence (CDS)

ATGGCTACTGAGGAGCCAGTTGTGGCGGTGGAGTCTGCGGCAGAGCCGGCCAACGCTGAACCAGCCGGAGAAAGTCCTGTGAAAAAGGCCGGGAAGTCGAAGAAATCCAAAGAATCTAAAGAGAAGAAGCCTGCTGCGCCTAAAAGATCTAGAAATCCCCCAACTCATCCTCCATATGAAGAGATGATTAAGGATGCGATTGTCACGTTGAAGGAGAGGACTGGTTCGAGTCAGTATGCGATTACGAAATTCATTGAGGAGAAGCAGAAGCAACTTCCTCCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTTGCTTCCGGGAAGCTGGTGAAGGTTAAGAGCTCGTTCAAGCTTCTGCCAGCGAAATTGGCAGCTTCGAAGCCTGCTTCTCCTGCGAAGAAGAAGCCAGTTGCTGCCAAGCCGAAACCTAAAGCGGCGGTGAAGACCAAGGCTGTGGCTAAACCAGCAGCAAAGCCGAAACCGGCAGCGAAGCCGAAGCCCAAGACGGCTGCTAAACCCAAGGCTGCTCCTAAACCTAAACCTAAACCTGCTCCCGCCAAGGCAAAGAGCAGTGCGGTTGCGAAGCCGAAAGCTGCAGCGAAGACTAAAGCTGCTCCCAAGCCGAAAGCCAAGGAGAATCCCGCCAAGGTAGCTAGGACATCCACGAGATCCTCACCAGGGAATAAGGCACCTGTTCCGAAACCGGCGGTGAAGAAAGCACCGGTGGCCAAGAAGGCTCTGGCGAAAAGTGTTAAGTCTAAGAAAGTGAAATCGCCGGCGAGAAAGGCTCCGGCAAGAAGAGGAAGGAAGTAA

Protein sequence

MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPAVKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK

Homology

[Close]

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.1e-49
Identity = 176/296 (59.46%), Postives = 198/296 (66.89%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGE--SPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPP 60
           MATEEPV+  E   E A  E   +  +P  K+GK+K  KE+K KKPAAP++    PTHPP
Sbjct: 1   MATEEPVIVNEVVEEQAAPETVKDEANPPAKSGKAK--KETKAKKPAAPRKRSATPTHPP 60

Query: 61  YEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKS 120
           Y EMIKDAIVTLKERTGSSQ+AITKFIEEKQK LP NFKKLLL  LKK VAS KLVKVK+
Sbjct: 61  YFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKN 120

Query: 121 SFKLLPAKLAASKPASPAKKKPVAAK----PKPKAAVKTK----AVAKPAAKPKPAAKPK 180
           S+K LP+    +  A PAKKKP AAK     KPKAAVK K    A AKPAAK KPAAK K
Sbjct: 121 SYK-LPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAK 180

Query: 181 PKTAAKP--KAAPKPKPKP-APAKAKSSAVAKPKAA-------AKTKAAPKP--KAKENP 240
           P   AKP  KA P  K KP A AK K++A AKPKAA       AKTKAA KP  KAK   
Sbjct: 181 PAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTT 240

Query: 241 AKVARTSTRSSPGNKAPVPKPAVKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           AKVA+T+TR++P  K      A  KA  AKK   K   +K VKSPA+KA  +RGRK
Sbjct: 241 AKVAKTATRTTPSRK------AAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.8e-47
Identity = 161/283 (56.89%), Postives = 183/283 (64.66%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPA---------GESPVKKAGKSKKSKESKEKKPAAPKRSR 60
           MATEEP+VAVE+  EP   EP           E P  +  K+KK+K SK KK + P   R
Sbjct: 1   MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKP---R 60

Query: 61  NPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASG 120
           NP +HP YEEMIKDAIV+LKE+ GSSQYAI KFIEEKQKQLP NFKKLLL +LKK VASG
Sbjct: 61  NPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASG 120

Query: 121 KLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAV-AKPAAKPKPAAKPK 180
           KL+KVK SFKL           S A KKP  AKPK K A K K+V AKPAAKPK  A  K
Sbjct: 121 KLIKVKGSFKL-----------SAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVK 180

Query: 181 PKTAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSP 240
           PK A+K KA    KPK A AK K+ A      AAK KA  KPK+K  PAKVA+TS +++P
Sbjct: 181 PKVASKAKAV-AAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTP 240

Query: 241 GNK-APVPKPAVKKAPVAKKALAKSVKSKKVKSPARKAPARRG 273
           G K A V K A KK PV      KSVK+K VKSP +K   +RG
Sbjct: 241 GKKVAAVKKVAAKKVPV------KSVKAKSVKSPVKKVSVKRG 262

[Close]

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 158/283 (55.83%), Postives = 183/283 (64.66%), Query Frame = 0


Query: 1   MATEEPVV--AVESAAEPANAEPAGESPVKKAGKSKKSKESK-EKKP---AAPKRSRNPP 60
           M+ EE  V   V+S A     +   + P  K GKSKK+  +K  KKP   AAP + +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLLPAKLAAS-KPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPK 180
           KVK+SFK+  A+ AA+ KPA+P KKK  V AKPK K A    A AK  A  K   KP  K
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAV-APAKAKAAAKGTKKPAAK 180

Query: 181 TAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKA-APKPKAKENPAKVARTSTRSSPG 240
             AK K   KPK K   AK KS +VA   A +KTKA A KPKAKE PAK +RTSTR+SPG
Sbjct: 181 VVAKAKVTAKPKAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPG 240

Query: 241 NKAPVPKPAVKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
            K   P    KK  V KKA AKSV   KVKSPA++A  R+ +K
Sbjct: 241 KKVAAP---AKKVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 139/274 (50.73%), Postives = 164/274 (59.85%), Query Frame = 0


Query: 3   TEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYEEM 62
           TE P   V++A E     PA  +    A K+KK+         APK+ R  PTH PY EM
Sbjct: 6   TETPAPLVDAAPEAPADAPAAPAADANAAKAKKA--------TAPKK-RASPTHLPYAEM 65

Query: 63  IKDAIVTLKERTGSSQYAITKFIEEKQK-QLPPNFKKLLLFHLKKLVASGKLVKVKSSFK 122
           + +AI +LKERTGSS YAI KF+E+K K +LPPNF+KLL   LKKLVA GKL KVK+S+K
Sbjct: 66  VSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYK 125

Query: 123 LLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAP 182
           L  A     KP + A KKP     KPKAA K K  AK  AK KPA KPKP  AAKPKA  
Sbjct: 126 LSSATKPNPKPKA-APKKPKTGAKKPKAAAKPK--AKTPAKAKPATKPKP--AAKPKAVV 185

Query: 183 KPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKE-NPAKVARTSTRSSPGNKAPVPKPA 242
           KPK  PA  KAK +A AKPK A    A PKP AK+   AK A+TS + +PG KAP     
Sbjct: 186 KPK-TPAKPKAKPAAKAKPKTAG---AKPKPLAKKAGRAKAAKTSAKDTPGKKAP----- 245

Query: 243 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
                 AKKA      SKK  +P RKAP+R+ +K
Sbjct: 246 ------AKKA----APSKKAATPVRKAPSRKAKK 246

[Close]

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-31
Identity = 134/264 (50.76%), Postives = 155/264 (58.71%), Query Frame = 0


Query: 12  SAAEPANAEPAGESPVKKAGKSKKSKESKEKK--PAAPKRSRNPPTHPPYEEMIKDAIVT 71
           +A  P       + P  K  K+K  KE KEKK   AAPK+ R   +HP YEEMIKDAIVT
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKK-RTVSSHPTYEEMIKDAIVT 76

Query: 72  LKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAA 131
           LKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLVKVK+SFKL  A   A
Sbjct: 77  LKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKA 136

Query: 132 SKPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPA 191
           S P + A+K  P   KP   A  K K     A+K K     KPKTAA  K   K K KP 
Sbjct: 137 SSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPV 196

Query: 192 PAKAKSSAVAKPKAAAKTKAA-PKPKAKENPAKVARTSTRSSPGNKAPVPKPAVKKAPVA 251
           P            AA K KA   KPKAK  PAK A+T+  +SP  KA      V      
Sbjct: 197 PRAT--------AAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATK 256

Query: 252 KKA-LAKSVKSKKVKSPARKAPAR 271
           KK  + K VK K VKSPA++A +R
Sbjct: 257 KKTPVKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL
Match: A0A6J1HRY8 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111466948 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.4e-123
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK
Sbjct: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 274

[Close]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL
Match: A0A6J1HKX3 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111463936 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.1e-121
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+AVESAAEPANAEPAGESPVKKA KSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKP 
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAPVAKKA AKSVKSKKVKSPARKAPARRGRK
Sbjct: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 274

[Close]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL
Match: A0A6J1CWP2 (histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 8.5e-98
Identity = 232/274 (84.67%), Postives = 243/274 (88.69%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVV VESAAEP +AE A E+P  KA KSKKSKE KEKKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTSAEAAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI DAIVTLKERTGSSQYAITKFIEEKQK LP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KP SPAKKKP AAKPKPKAA KTKAVAK  AKPK AAKPKPKTAAKPKAA
Sbjct: 121 KLKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
             PKPKPAPAK+KSSAVAKPKAA KTKAAPKPKAKE PAKVARTSTR+SPG +AP PKPA
Sbjct: 181 --PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPA 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
            KKAP AKKA AKSVK+KKVKSPA+KAPA+RG+K
Sbjct: 241 PKKAPAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL
Match: A0A5A7UQL0 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.7e-95
Identity = 229/274 (83.58%), Postives = 239/274 (87.23%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVV VESAAEP NAE A E+P  KA KSKKSKE KEKKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KPASPAKKKPVAAKPK KA  K KAVAK  AKPK AAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
             PKPK AP K+KSSAVAKPKAAAKTKAAPKPKAKE PAK ARTSTR+SPG KAP PKP 
Sbjct: 181 --PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKA +KSVK+KKVKS A+KAP++RG K
Sbjct: 241 VKKAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL
Match: A0A1S3BL93 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.7e-95
Identity = 229/274 (83.58%), Postives = 239/274 (87.23%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVV VESAAEP NAE A E+P  KA KSKKSKE KEKKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTNAEQAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KPASPAKKKPVAAKPK KA  K KAVAK  AKPK AAKPKPKT AKPKAA
Sbjct: 121 KLKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
             PKPK AP K+KSSAVAKPKAAAKTKAAPKPKAKE PAK ARTSTR+SPG KAP PKP 
Sbjct: 181 --PKPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPV 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAP AKKA +KSVK+KKVKS A+KAP++RG K
Sbjct: 241 VKKAPAAKKAPSKSVKAKKVKSLAKKAPSKRGSK 272

[Close]

BLAST of CmaCh19G000630 vs. NCBI nr
Match: XP_022967411.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 7.1e-123
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK
Sbjct: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 274

[Close]

BLAST of CmaCh19G000630 vs. NCBI nr
Match: XP_023554323.1 (histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.9 bits (1143), Expect = 5.1e-121
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+AVESAAEPANAEPAGESPVKKA KSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAPVAKKA AKSVKSKKVKSPARKAPARRGRK
Sbjct: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 274

[Close]

BLAST of CmaCh19G000630 vs. NCBI nr
Match: XP_022963684.1 (histone H1-like [Cucurbita moschata] >KAG7011251.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.4 bits (1139), Expect = 1.5e-120
Identity = 270/274 (98.54%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+AVESAAEPANAEPAGESPVKKA KSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKP 
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
           VKKAPVAKKA AKSVKSKKVKSPARKAPARRGRK
Sbjct: 241 VKKAPVAKKAPAKSVKSKKVKSPARKAPARRGRK 274

[Close]

BLAST of CmaCh19G000630 vs. NCBI nr
Match: KAG6571489.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418.3 bits (1074), Expect = 5.1e-113
Identity = 254/262 (96.95%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPV+AVESAAEPANAEPAGESPVKKA KSKKSKESKEKKPAAPKRSRNPPTHPPYE
Sbjct: 1   MATEEPVLAVESAAEPANAEPAGESPVKKAAKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA
Sbjct: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
           PKPKPKPAPAKAKSSAVAKPKAAAKTKA+PKPKAKENPAKVARTSTRSSPGNKAPVPKP 
Sbjct: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKASPKPKAKENPAKVARTSTRSSPGNKAPVPKPV 240

Query: 241 VKKAPVAKKALAKSVKSKKVKS 263
           VKKAPVAKKA AKSVKSKK ++
Sbjct: 241 VKKAPVAKKAPAKSVKSKKFEA 262

[Close]

BLAST of CmaCh19G000630 vs. NCBI nr
Match: XP_022145924.1 (histone H1 [Momordica charantia])

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-97
Identity = 232/274 (84.67%), Postives = 243/274 (88.69%), Query Frame = 0


Query: 1   MATEEPVVAVESAAEPANAEPAGESPVKKAGKSKKSKESKEKKPAAPKRSRNPPTHPPYE 60
           MATEEPVV VESAAEP +AE A E+P  KA KSKKSKE KEKKPAAP++ RNPPTHPPYE
Sbjct: 1   MATEEPVVPVESAAEPTSAEAAEENPPNKAAKSKKSKEPKEKKPAAPRKPRNPPTHPPYE 60

Query: 61  EMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSF 120
           EMI DAIVTLKERTGSSQYAITKFIEEKQK LP NFKKLLLFHLKKLVASGKLVKVKSSF
Sbjct: 61  EMINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSF 120

Query: 121 KLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAA 180
           KL PAK A  KP SPAKKKP AAKPKPKAA KTKAVAK  AKPK AAKPKPKTAAKPKAA
Sbjct: 121 KLKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAA 180

Query: 181 PKPKPKPAPAKAKSSAVAKPKAAAKTKAAPKPKAKENPAKVARTSTRSSPGNKAPVPKPA 240
             PKPKPAPAK+KSSAVAKPKAA KTKAAPKPKAKE PAKVARTSTR+SPG +AP PKPA
Sbjct: 181 --PKPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPA 240

Query: 241 VKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
            KKAP AKKA AKSVK+KKVKSPA+KAPA+RG+K
Sbjct: 241 PKKAPAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of CmaCh19G000630 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 158/283 (55.83%), Postives = 183/283 (64.66%), Query Frame = 0


Query: 1   MATEEPVV--AVESAAEPANAEPAGESPVKKAGKSKKSKESK-EKKP---AAPKRSRNPP 60
           M+ EE  V   V+S A     +   + P  K GKSKK+  +K  KKP   AAP + +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLLPAKLAAS-KPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPK 180
           KVK+SFK+  A+ AA+ KPA+P KKK  V AKPK K A    A AK  A  K   KP  K
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKVAAAV-APAKAKAAAKGTKKPAAK 180

Query: 181 TAAKPKAAPKPKPKPAPAKAKSSAVAKPKAAAKTKA-APKPKAKENPAKVARTSTRSSPG 240
             AK K   KPK K   AK KS +VA   A +KTKA A KPKAKE PAK +RTSTR+SPG
Sbjct: 181 VVAKAKVTAKPKAKVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPG 240

Query: 241 NKAPVPKPAVKKAPVAKKALAKSVKSKKVKSPARKAPARRGRK 275
            K   P    KK  V KKA AKSV   KVKSPA++A  R+ +K
Sbjct: 241 KKVAAP---AKKVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of CmaCh19G000630 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-32
Identity = 134/264 (50.76%), Postives = 155/264 (58.71%), Query Frame = 0


Query: 12  SAAEPANAEPAGESPVKKAGKSKKSKESKEKK--PAAPKRSRNPPTHPPYEEMIKDAIVT 71
           +A  P       + P  K  K+K  KE KEKK   AAPK+ R   +HP YEEMIKDAIVT
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKK-RTVSSHPTYEEMIKDAIVT 76

Query: 72  LKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLVKVKSSFKLLPAKLAA 131
           LKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LVASGKLVKVK+SFKL  A   A
Sbjct: 77  LKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKA 136

Query: 132 SKPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPKTAAKPKAAPKPKPKPA 191
           S P + A+K  P   KP   A  K K     A+K K     KPKTAA  K   K K KP 
Sbjct: 137 SSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPV 196

Query: 192 PAKAKSSAVAKPKAAAKTKAA-PKPKAKENPAKVARTSTRSSPGNKAPVPKPAVKKAPVA 251
           P            AA K KA   KPKAK  PAK A+T+  +SP  KA      V      
Sbjct: 197 PRAT--------AAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATK 256

Query: 252 KKA-LAKSVKSKKVKSPARKAPAR 271
           KK  + K VK K VKSPA++A +R
Sbjct: 257 KKTPVKKVVKPKTVKSPAKRASSR 271

[Close]

BLAST of CmaCh19G000630 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25
Identity = 108/207 (52.17%), Postives = 128/207 (61.84%), Query Frame = 0


Query: 1   MATEEPVV--AVESAAEPANAEPAGESPVKKAGKSKKSKESK-EKKP---AAPKRSRNPP 60
           M+ EE  V   V+S A     +   + P  K GKSKK+  +K  KKP   AAP + +   
Sbjct: 1   MSIEEENVPTTVDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTS 60

Query: 61  THPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVASGKLV 120
           +HP YEEMIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LVAS KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 121 KVKSSFKLLPAKLAAS-KPASPAKKK-PVAAKPKPKAAVKTKAVAKPAAKPKPAAKPKPK 180
           KVK+SFK+  A+ AA+ KPA+P KKK  V AKPK   A +T     P    K  A P  K
Sbjct: 121 KVKASFKIPSARSAATPKPAAPVKKKATVVAKPK---ASRTSTRTSPG---KKVAAPAKK 180

Query: 181 TAAKPKAAPKPKPKPAPAKAKSSAVAK 200
            A   KA  K     +PAK  S+  AK
Sbjct: 181 VAVTKKAPAKSVKVKSPAKRASTRKAK 201

[Close]

BLAST of CmaCh19G000630 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-07
Identity = 68/171 (39.77%), Postives = 90/171 (52.63%), Query Frame = 0


Query: 42  KKPAAPKRSRNP--PTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKQKQ-LPPNFKK 101
           KK  A K+ R P   THPPY +MIK+A++ LKE+ GSS YAI K IEEK K  LP +F+K
Sbjct: 8   KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67

Query: 102 LLLFHLKKLVASGKLVKVKSSFKLLPAKLAASKPASPAKKKPVAAKPKPKAAVKTKAVAK 161
            L   LK  VA GKLVK+++S+KL       ++      KK +  + K      TK    
Sbjct: 68  TLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKE----ITKRTRS 127

Query: 162 PAAKPKPAAKPKPKTAAKPKAAPKPKPKPA-PAKAKSSAVAKPKAAAKTKA 209
            + +PK       KT +  K   K K K A   K+  S+V K KA   + A
Sbjct: 128 SSTRPK-------KTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKASAA 167

The following BLAST results are available for this feature:

BLAST of CmaCh19G000630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	9.1e-49	59.46	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P08283	3.8e-47	56.89	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P26569	4.1e-41	55.83	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P23444	1.3e-31	50.73	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P26568	1.7e-31	50.76	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]

BLAST of CmaCh19G000630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRY8	3.4e-123	100.00	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111466948 PE=3 SV=1	[more]
A0A6J1HKX3	7.1e-121	98.54	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111463936 PE=3 SV=1	[more]
A0A6J1CWP2	8.5e-98	84.67	histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1	[more]
A0A5A7UQL0	6.7e-95	83.58	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=...	[more]
A0A1S3BL93	6.7e-95	83.58	histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1	[more]

BLAST of CmaCh19G000630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967411.1	7.1e-123	100.00	histone H1-like [Cucurbita maxima]	[more]
XP_023554323.1	5.1e-121	98.91	histone H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963684.1	1.5e-120	98.54	histone H1-like [Cucurbita moschata] >KAG7011251.1 Histone H1.2 [Cucurbita argyr...	[more]
KAG6571489.1	5.1e-113	96.95	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022145924.1	1.7e-97	84.67	histone H1 [Momordica charantia]	[more]

BLAST of CmaCh19G000630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	2.9e-42	55.83	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.2e-32	50.76	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	5.5e-25	52.17	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	2.3e-07	39.77	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 198..217 score: 33.33 coord: 42..63 score: 42.42 coord: 176..193 score: 45.68 coord: 69..86 score: 43.21 coord: 142..156 score: 27.41
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 e-value: 1.6E-34 score: 130.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 e-value: 5.5E-19 score: 68.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 55..124 score: 30.348433
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..133 e-value: 6.49257E-18 score: 74.5799
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 50..146 e-value: 2.5E-23 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..274
None	No IPR available	PANTHER	PTHR11467:SF131	HISTONE H1.1	coord: 2..274
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 2..274
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 52..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000630.1	CmaCh19G000630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding