CmaCh19G000590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	PRA1 family protein
Location	Cma_Chr19: 320878 .. 321854 (-)
RNA-Seq Expression	CmaCh19G000590
Synteny	CmaCh19G000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGTAAGCGCAATCTCAACTACTTTCGTGTTAATTACACCTTCATCGTCTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTGTTTCCTTGATTGTCTTCTTGATCGTGTTCGTTGCCTGGTTCTTCCTTTATTTTTTCACGGATGGTCCATTGGTGGTGTATAATCGTGTTGTTGATGATCGAGTCGTGTTGGCTGTGCTTGGATTGGTCACGATTGTCGCTTTGGTGTACACGGATGTGTCGTTGAACGTATTGATTTCGGTTTTGATTGGGGTTTTTCTTGTTTTGATACATGCCGCCTTTAGGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAGGTTACCAATGATGATCTTGCCTTGTCCGATCCAAGTTCTTCGTGCCACGATTCCAATGAGTATTAGATATCAATCTTTTCTCTCTAGCTATCACTTGGAGATCCGGTTTGATACCACTGATTATTTTAGGATGATTCTTTTATTACCAATTAAGTTTGAATGAGCATTTGGGTGTGATTTTCTGCAATGTTTTGGGTTTGAAGTGTTCTTTACTTTTGGAAAGATGGAATTTCAAACAGTAGATATCAATGTTGGGTTTGAATGTCCTGTTAATGTATACACTGTCTGTCTGCCATTTCATGTTGTTACTGTGGCGTTCTTTCTCTTCATCATGTTGGAAAATTTCTGGGTATGTTTGTTGATTCATGTGAACTATAATGGTGTGTTCCTGGCTCCAAATTTA

mRNA sequence

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAGGTTACCAATGATGATCTTGCCTTGTCCGATCCAAGTTCTTCGTGCCACGATTCCAATGAGTATTAGATATCAATCTTTTCTCTCTAGCTATCACTTGGAGATCCGGTTTGATACCACTGATTATTTTAGGATGATTCTTTTATTACCAATTAAGTTTGAATGAGCATTTGGGTGTGATTTTCTGCAATGTTTTGGGTTTGAAGTGTTCTTTACTTTTGGAAAGATGGAATTTCAAACAGTAGATATCAATGTTGGGTTTGAATGTCCTGTTAATGTATACACTGTCTGTCTGCCATTTCATGTTGTTACTGTGGCGTTCTTTCTCTTCATCATGTTGGAAAATTTCTGGGTATGTTTGTTGATTCATGTGAACTATAATGGTGTGTTCCTGGCTCCAAATTTA

Coding sequence (CDS)

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCAGACCCGCCTCCCATTCCATTTACGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCGTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGTATGCTTTCGGTTGTTGGCAGCAGATAAATCCCCGGTTCATAGTTTCTAG

Protein sequence

MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIRWLQRICILTSKKSPMAVCFRLLAADKSPVHSF

Homology

[Close]

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A6J1HWW4 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 56

[Close]

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A6J1HKD9 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSF RPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFIRPSSISEATIR 48

[Close]

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A0A0LKV0 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP+PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPSPYGFTETSILSRARAASDSLYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A5A7UNI5 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001030 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL
Match: A0A1S3BMR2 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+S QP PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSS+ EA IR
Sbjct: 1  MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIR 56

[Close]

BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_022967499.1 (PRA1 family protein E-like [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.8e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 56

[Close]

BLAST of CmaCh19G000590 vs. NCBI nr
Match: KAG7011248.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-15
Identity = 48/56 (85.71%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIR 48

[Close]

BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_038887336.1 (PRA1 family protein E-like [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-15
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          M+SVQP+PY F+ET ILSR R AS S+YATLRPWRELLQP SSFTRPSSI EATIR
Sbjct: 1  MSSVQPSPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSIGEATIR 56

[Close]

BLAST of CmaCh19G000590 vs. NCBI nr
Match: KAG6571486.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 47/56 (83.93%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSETPILSRF        ATL+PWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSETPILSRF--------ATLQPWRELLQPPSSFTRPSSISEATIR 48

[Close]

BLAST of CmaCh19G000590 vs. NCBI nr
Match: XP_023554093.1 (PRA1 family protein E-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIR 57
          MASVQPTPYAFSE PILSRF        ATLRPWRELLQPPSSFTRPSSISEATIR
Sbjct: 1  MASVQPTPYAFSEAPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIR 48

The following BLAST results are available for this feature:

BLAST of CmaCh19G000590 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWW4	1.9e-22	100.00	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1	[more]
A0A6J1HKD9	1.4e-14	83.93	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1	[more]
A0A0A0LKV0	1.6e-13	75.00	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1	[more]
A0A5A7UNI5	2.7e-13	75.00	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G...	[more]
A0A1S3BMR2	2.7e-13	75.00	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1	[more]

BLAST of CmaCh19G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967499.1	3.8e-22	100.00	PRA1 family protein E-like [Cucurbita maxima]	[more]
KAG7011248.1	6.0e-15	85.71	PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038887336.1	6.0e-15	80.36	PRA1 family protein E-like [Benincasa hispida]	[more]
KAG6571486.1	1.7e-14	83.93	PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554093.1	2.3e-14	83.93	PRA1 family protein E-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh19G000590 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000590.1	CmaCh19G000590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane