CmaCh19G000490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	Cma_Chr19: 275754 .. 280026 (-)
RNA-Seq Expression	CmaCh19G000490
Synteny	CmaCh19G000490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCACTGCAATCATGAAGCTCGTTAGGTATGCTCTTACGCTCTTCTCTTTTCTATTTTCGATCTCCTTCTTCTCGATCTATTCGCTGTTCTCTACCCAGAATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATGTACAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTCACTTTCACTCGCAGCCACGCACATTGATATTTTCTTAATCTTGTTAAACCCTAGATTTACCAACTTTGTAGGAGAGCTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGCAAGTCGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGGTTTATGATTTATCTTCAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAATTGTGTGTGGCTATTTTTCTTGCGATGGCTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTTAGTCTGTCCGCCAGTGTACGATTATCGTTTTTCTTGCTTTTGTCTCACAATTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGAAAGCTAACTGAAGAGTTCTGGCAAGCGCGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTACTAGCCCACTGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGCTTCCTCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAAGTTTTCACACCCTTATAAAGAATGCTTTGTTTTCCTTCCCAACCAGTGTGGGATCTCACAATCCACCCCCCTTCGGGGGCCCAACGTCTTCGTTGGCACTCGTTCCCTTCTCCAATCAATGTGGACCCCCAATCCACCCCCCTTCGAGGCTTAGCCTCCTTGCTGCCACATTGTCCGATTTCTAGCTCTGATACCATTTGTAACAATCTAAGTCCACCACTAGCAAATAATGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCTTCTCAAGGTTTTTAAAACGCTTCTTCTAGGGAGAGGTTTTTACACTTATAAATAATGCTTCGTTCTCCTCCTCAACCGACGTGGGATCTTCAACTCTCATCATTTAAAAAAAAAAACTAGTATTAAACTCATAGGTTGCTTACGGGCAACTAAATTCCTTGTCATCTAAGCATTGGGAGGATGCGGTGTTTTCTCTGTATAGTTTTTATTTTTATCATTCTTAACAAACAAATCAATTTGAACTATTGACTACTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATATCAGTAGATTTAAACAAATCTTTTAAATGCCCTCTCACTTTTATATGGACTGATTCCTACCATTCCTTCTTTCCCCTTTGTTTTGAAGGGGTTGTTTCTTAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTTTCACATGCAGTAGAATGGCATCAACTTAGTCTGATTAAAAACTAACTTCTGCTGAACACCAGTATTTTTGGATTGTGTTGCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTGCGTTTTGGGTTTTGTCTTCTTCATCGTTTGAAACGTAATAATAGTTACCATCCTTAAATGCAAAAACCCTTGCATTTAGTGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATATAGTGCACATTACAAAAGAAAGGTCTTGCTTTTTTATTTTTTTGCACCTTGCACGACATAAGGCTATTGTTCCCTGAGCTTTAAAAAACACTGATTACAATAGAATATGAATATCTTGTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACAAATAGAATCTATAATAGATTATTTTTTCCTTAAGAATCCATAGAAGGACAATTCCAAGAGATCTTAGCCTTAAATTTAAGCCATCAGGCCGTGAGGGCTTCCAAGGAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAATTTTGGGTTTCATCATAGGAATAGCAGAGGAACAAACCAGGGAGAGAACCCAATTTTGGAACTTTTTTTGAGCCGCTTGGGGAGTTGAGGCTTCTTTAAGTAAGTGACCACACAATCATATTAACCTTCCTGGGGACGTCAAACTTCCAAACTGATTTACCCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAAGTGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTTTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCCTTGCCTATCTTTCTGGTTTAACCCCTTGTTGCCAACAATCACTCTTCTCCCTAAGCATTTAAGAATGAGGGCGTTATTTCTCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCCGGAAAGAGCCAATGGAAGGAAAGTCCAACTCCATTTTATTTGGTGCTTCCATTTAACGTATTTCTCTATGCGGCTGCTACTGAAACTAGTTATTTACTCACAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAGTTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATGTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGGCAGCCTTGAGACTTTTCCTCCGGTGGAGGTGAGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTCTAATTTAATTAATTTTTTTTTACCAAGTATTGATAAACAAACTTAGTAATCATAAAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATGAAGCATGGACACATATGTCCGGATATGCTTTGGCCATGCTATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTTTAGATTGAATCTTTAAATATTGATCAATCCTAAGTATTAGGATGACATGTTCATCCTCTTGCAGCCAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAATTGACTCAACTATGGATGCTTTTAGTGAAGCTTATTTTATTTTTATGTTTAATTCACATTTTATCTATTAAAAAAACAGACTAATATACCTATATCGACACATATTTTATATAAAAAAACATGTCCCCAAGGTGCTTGTGTCCTACATTTTAAGAATTTGATGTGTCTCAGTGTTTATGTCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCTTTAACGTCACTACTATTATCGTTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTCTTGTGTTTCATAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

mRNA sequence

TACAAATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCACTGCAATCATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Coding sequence (CDS)

ATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGTCCPCIHACTYGHFLQVNLCMLSYMLYPLSNVLLMHFYTLLQLQGSLWDVDEDVDVGVVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYNVIQLFFYD

Homology

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BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-45
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95

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BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-44
Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP+AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]

BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

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BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL
Match: A0A445FZD7 (Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 107/159 (67.30%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGTCCPCIHACTYGHFLQVNLCMLSYM 120
           RGNNIRYYILPDSLNLETLLVEETP++KPKKP AG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGL------------------------ 120

Query: 121 LYPLSNVLLMHFYTLLQLQGSLWDVDED--VDVGVVVVV 158
              + N+   HF      QG+LWDVDE+  V VGV VVV
Sbjct: 121 ---IFNIFSSHF------QGNLWDVDEEGAVGVGVDVVV 126

[Close]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL
Match: A0A6J1HWZ0 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111467008 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 95

[Close]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.3e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.3e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 5.3e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of CmaCh19G000490 vs. NCBI nr
Match: KAG6593429.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 161/188 (85.64%), Postives = 169/188 (89.89%), Query Frame = 0


Query: 21  NGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 80
           N  ++  +  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 6   NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65

Query: 81  VEETPRVKPKKPIAGTCCPCIHACTYGHFLQVNLCMLSYMLYPLSNVLLMHFYTLLQLQG 140
           VEETPRVKP+   AGTCCPCIHA TYGHF + + C+   + YPLSNVLL HFYTLLQLQG
Sbjct: 66  VEETPRVKPRNQTAGTCCPCIHAYTYGHFCE-STCVYRIIYYPLSNVLLKHFYTLLQLQG 125

Query: 141 SLWDVDEDVDVGVVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYN 200
           SLWDVDEDVDVG VVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYN
Sbjct: 126 SLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYN 185

Query: 201 VIQLFFYD 209
           VIQLFFYD
Sbjct: 186 VIQLFFYD 192

[Close]

BLAST of CmaCh19G000490 vs. NCBI nr
Match: RZB54124.1 (Small nuclear ribonucleoprotein SmD1b [Glycine soja])

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-44
Identity = 107/159 (67.30%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGTCCPCIHACTYGHFLQVNLCMLSYM 120
           RGNNIRYYILPDSLNLETLLVEETP++KPKKP AG                         
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGL------------------------ 120

Query: 121 LYPLSNVLLMHFYTLLQLQGSLWDVDED--VDVGVVVVV 158
              + N+   HF      QG+LWDVDE+  V VGV VVV
Sbjct: 121 ---IFNIFSSHF------QGNLWDVDEEGAVGVGVDVVV 126

[Close]

BLAST of CmaCh19G000490 vs. NCBI nr
Match: XP_022967529.1 (small nuclear ribonucleoprotein SmD1a [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 95

[Close]

BLAST of CmaCh19G000490 vs. NCBI nr
Match: PPD72193.1 (hypothetical protein GOBAR_DD30914 [Gossypium barbadense])

HSP 1 Score: 188.0 bits (476), Expect = 8.5e-44
Identity = 95/106 (89.62%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGTC--CPCIHAC 105
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG C   P +  C
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGICRFSPAVFPC 106

[Close]

BLAST of CmaCh19G000490 vs. NCBI nr
Match: XP_022963993.1 (small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita pepo subsp. pepo] >KAG7011241.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]

BLAST of CmaCh19G000490 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-46
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95

[Close]

BLAST of CmaCh19G000490 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 181.4 bits (459), Expect = 7.4e-46
Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP+AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of CmaCh19G000490 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 181.4 bits (459), Expect = 7.4e-46
Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP+AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]

BLAST of CmaCh19G000490 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-44
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKP AG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 105

[Close]

BLAST of CmaCh19G000490 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-06
Identity = 23/92 (25.00%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
            +R+ ++PD L    +      R+K K    G
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG 100

The following BLAST results are available for this feature:

BLAST of CmaCh19G000490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY09	1.6e-45	93.68	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q9SSF1	1.0e-44	91.58	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q3ZC10	1.2e-32	75.82	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	1.2e-32	75.82	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]
Q4R5F6	1.2e-32	75.82	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P...	[more]

BLAST of CmaCh19G000490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445FZD7	4.8e-45	67.30	Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE...	[more]
A0A6J1HWZ0	1.4e-44	100.00	Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11146700...	[more]
A0A6J1DVC4	5.3e-44	98.95	Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1K070	5.3e-44	98.95	Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127...	[more]
A0A0A0LD16	5.3e-44	98.95	Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900...	[more]

BLAST of CmaCh19G000490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593429.1	4.1e-83	85.64	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
RZB54124.1	1.0e-44	67.30	Small nuclear ribonucleoprotein SmD1b [Glycine soja]	[more]
XP_022967529.1	2.9e-44	100.00	small nuclear ribonucleoprotein SmD1a [Cucurbita maxima]	[more]
PPD72193.1	8.5e-44	89.62	hypothetical protein GOBAR_DD30914 [Gossypium barbadense]	[more]
XP_022963993.1	1.1e-43	98.95	small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] >XP_023553601.1 ...	[more]

BLAST of CmaCh19G000490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.1	1.1e-46	93.68	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	7.4e-46	91.58	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	7.4e-46	91.58	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	3.1e-44	84.76	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	9.7e-06	25.00	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..70 e-value: 1.1E-16 score: 71.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..69 e-value: 1.6E-17 score: 62.9
None	No IPR available	GENE3D	2.30.30.100		coord: 1..85 e-value: 4.3E-33 score: 114.7
None	No IPR available	PANTHER	PTHR23338:SF39	SMALL NUCLEAR RIBONUCLEOPROTEIN SMD1B	coord: 1..97
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..97
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 2..92 e-value: 1.75535E-64 score: 192.44
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 4..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000490.1	CmaCh19G000490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding