CmaCh19G000430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Regulator of rDNA transcription protein 15
Location	Cma_Chr19: 225335 .. 226838 (+)
RNA-Seq Expression	CmaCh19G000430
Synteny	CmaCh19G000430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATAGCATTTTCTACACTGTCGTATTCGTCTACTATTAAACCAGGTTCCATGCTAGACGCTTCCGACAATTGCACGATTCATGAGCTGAGTCGGAGAGCTTATTGTCGTTTGTTGTGTAGCATATGGAACCTGTTTTATACTACTTATACATTTAGGGGCGAATGGCAATACCGTTTGAACAACCTCCGAAACATGTCATAACTGGATAAACAAGATCAGTCAGTCTTAAAACATATACATTACAGCTCAACAGAGGACGAGGACGAGTTTCGTGTACAAAAGAGAGACAGTTTATACTAATGCAACATTTTCAGCTCTTTTCACTTTGTTTTTGTCATTTTCTTTCTCTTAGCTGCGGAACGCTCGGCGTCACGACCCGTGCCTGGAGACATAGCATCACGAATTGCTCGAGAAGAAGCGTTGACAGCTGATTCAGTAACTTTTGTGAGATTGGAGACTAAGATCACATCCTTCATTTTCTCCAGCACTTCAGAAATATTTCTATTCCCTTTCTCATACTACACAAATCAAACAAAATAACTTCCCATCAAATACTAAAAAATCATGTTGATTTGGTTTGGTTTAAGCAACGGATGGGGCACGAATTCTCCCCAGACACAAAAAGTTCGTAAACCCGTTCGTGGGTCGTTTGATGTCTAGACATCGACAGTGATCCTTCCACAGGTTCACCTACAGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGATTCAGTGGACTTCTCGCGACGTCGCAGGTAGCGAACCACCTACGTCGTCACAATCCAAACACTTCACCGGACCATTCAATCGGTAGGATATAGTCAACGCGAGTTGATGACTCACGCTTATTAGAAATCCCTCATTGAAAACTAACAATTGCAATGATCTATCGTATAGAGCATGGAATCAACGGTACGTACTGCTTCGACTTTACAAAGAGCTGTTTCCAACTTCTGAGTAAGCTGATGGTTTTCGTCGATTAAGGCTTGAACCTGACATACATTAAGATGGTACTGTTCATAGATATACGAATGAGAATCGAGATTCATTAATACGAAAATAACAAAATTAACCTTTTTCTGGGATTCGAAGTACAAGCCCTTGTATTTGACATCTATTGGTGATGAGCTTTCACTCAACAATGGATTCTCATCATTCTGCTAGACATTGAACAACCAATGAAAAGAAAATCATAGAGCAAAATGAACTTCAAAACATATCATGTCAATTCCTATGCTTTGGCACCTTAGCTTTCAATGCGTTTATGGTTCGTTCTTGAGTTTCGAGTAGTTTGACTACATAATCAATCTTTCCGTGCAAGTCCCGTTCGCCCGAGTTCGGCTCGTTCAAATGCTTTCTCTCCTCAGCTGGTGGTTCATCATCTTTTTCAGTCTCACTAAAAGCTATTTCTTCAATCACAGGTTCGATGCAGTCATTTTCAAATGGAATAACGGCATTTCGAATCCGTTCAGACCGTCGAGTAACAGAAGG

mRNA sequence

ATGGTCATAGCATTTTCTACACTGTCGTATTCGTCTACTATTAAACCAGGTTCCATGCTAGACGCTTCCGACAATTGCACGATTCATGAGCTGAGTCGGAGAGCTTATTGTCCTGCGGAACGCTCGGCGTCACGACCCGTGCCTGGAGACATAGCATCACGAATTGCTCGAGAAGAAGCGTTGACAGCTGATTCATGGACTTCTCGCGACGTCGCAGGTAGCGAACCACCTACGTCGTCACAATCCAAACACTTCACCGGACCATTCAATCGGTTCGATGCAGTCATTTTCAAATGGAATAACGGCATTTCGAATCCGTTCAGACCGTCGAGTAACAGAAGG

Coding sequence (CDS)

ATGGTCATAGCATTTTCTACACTGTCGTATTCGTCTACTATTAAACCAGGTTCCATGCTAGACGCTTCCGACAATTGCACGATTCATGAGCTGAGTCGGAGAGCTTATTGTCCTGCGGAACGCTCGGCGTCACGACCCGTGCCTGGAGACATAGCATCACGAATTGCTCGAGAAGAAGCGTTGACAGCTGATTCATGGACTTCTCGCGACGTCGCAGGTAGCGAACCACCTACGTCGTCACAATCCAAACACTTCACCGGACCATTCAATCGGTTCGATGCAGTCATTTTCAAATGGAATAACGGCATTTCGAATCCGTTCAGACCGTCGAGTAACAGAAGG

Protein sequence

MVIAFSTLSYSSTIKPGSMLDASDNCTIHELSRRAYCPAERSASRPVPGDIASRIAREEALTADSWTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIFKWNNGISNPFRPSSNRR

Homology

[Close]

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL
Match: A0A2G2WGZ9 (Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW23_13669 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIFK 99
           W SRDVAG EPPTS QSKHFTG FNR D V+F+
Sbjct: 117 WNSRDVAGREPPTSPQSKHFTGSFNRCDVVVFR 149

[Close]

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL
Match: A0A2G2UXI2 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34915 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVI 97
           WTSRDVAGSEPPTS +S+HFTG FNRFD ++
Sbjct: 140 WTSRDVAGSEPPTSPRSEHFTGSFNRFDGLL 170

[Close]

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL
Match: A0A6A6K0C8 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_044004 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIF 98
           WTSRDVAG EPPTS +S+HFTGPFNR + V F
Sbjct: 360 WTSRDVAGGEPPTSPRSEHFTGPFNRINQVAF 391

[Close]

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL
Match: A0A6A6K1I5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_044020 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIF 98
           WTSRDVAG EPPTS +S+HFTGPFNR + V F
Sbjct: 131 WTSRDVAGGEPPTSPRSEHFTGPFNRINQVAF 162

[Close]

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL
Match: A0A2G2V2F1 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33209 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVI 97
           WTSRDVAGSEPPTS +S+HFTG FNRF+ ++
Sbjct: 152 WTSRDVAGSEPPTSPRSEHFTGSFNRFNGLL 182

[Close]

BLAST of CmaCh19G000430 vs. NCBI nr
Match: PHT44511.1 (Regulator of rDNA transcription protein 15 [Capsicum baccatum])

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-05
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIFK 99
           W SRDVAG EPPTS QSKHFTG FNR D V+F+
Sbjct: 117 WNSRDVAGREPPTSPQSKHFTGSFNRCDVVVFR 149

[Close]

BLAST of CmaCh19G000430 vs. NCBI nr
Match: PHT25456.1 (hypothetical protein CQW23_34915 [Capsicum baccatum])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-05
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVI 97
           WTSRDVAGSEPPTS +S+HFTG FNRFD ++
Sbjct: 140 WTSRDVAGSEPPTSPRSEHFTGSFNRFDGLL 170

[Close]

BLAST of CmaCh19G000430 vs. NCBI nr
Match: KAF2282497.1 (hypothetical protein GH714_044020 [Hevea brasiliensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIF 98
           WTSRDVAG EPPTS +S+HFTGPFNR + V F
Sbjct: 131 WTSRDVAGGEPPTSPRSEHFTGPFNRINQVAF 162

[Close]

BLAST of CmaCh19G000430 vs. NCBI nr
Match: KAF2282271.1 (hypothetical protein GH714_044004 [Hevea brasiliensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 66  WTSRDVAGSEPPTSSQSKHFTGPFNRFDAVIF 98
           WTSRDVAG EPPTS +S+HFTGPFNR + V F
Sbjct: 360 WTSRDVAGGEPPTSPRSEHFTGPFNRINQVAF 391

[Close]

BLAST of CmaCh19G000430 vs. NCBI nr
Match: KAF7800495.1 (hypothetical protein G2W53_045089 [Senna tora] >KAF7800531.1 hypothetical protein G2W53_045054 [Senna tora] >KAF7800586.1 hypothetical protein G2W53_044980 [Senna tora] >KAF7801114.1 hypothetical protein G2W53_045158 [Senna tora])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 66 WTSRDVAGSEPPTSSQSKHFTGPFNRFD--AVIFK 99
          WTSRDVAGSEPPTS +S+HFTGPFNR +  A++F+
Sbjct: 14 WTSRDVAGSEPPTSPRSEHFTGPFNRINQVAILFR 48

The following BLAST results are available for this feature:

BLAST of CmaCh19G000430 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2WGZ9	2.1e-05	75.76	Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW2...	[more]
A0A2G2UXI2	3.5e-05	77.42	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34915 PE=4 SV=1	[more]
A0A6A6K0C8	6.0e-05	75.00	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_044004 PE=4 SV=1	[more]
A0A6A6K1I5	6.0e-05	75.00	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_044020 PE=4 SV=1	[more]
A0A2G2V2F1	1.3e-04	74.19	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33209 PE=4 SV=1	[more]

BLAST of CmaCh19G000430 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT44511.1	4.2e-05	75.76	Regulator of rDNA transcription protein 15 [Capsicum baccatum]	[more]
PHT25456.1	7.2e-05	77.42	hypothetical protein CQW23_34915 [Capsicum baccatum]	[more]
KAF2282497.1	1.2e-04	75.00	hypothetical protein GH714_044020 [Hevea brasiliensis]	[more]
KAF2282271.1	1.2e-04	75.00	hypothetical protein GH714_044004 [Hevea brasiliensis]	[more]
KAF7800495.1	1.2e-04	71.43	hypothetical protein G2W53_045089 [Senna tora] >KAF7800531.1 hypothetical protei...	[more]

BLAST of CmaCh19G000430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000430.1	CmaCh19G000430.1	mRNA