CmaCh19G000270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ORF43m
Location	Cma_Chr19: 148122 .. 148827 (-)
RNA-Seq Expression	CmaCh19G000270
Synteny	CmaCh19G000270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTAAAAGAAAGGAAAATCCATGGACCGACCTCATCGTCTCCATCTCATAGGAACTACGGTGTTTTATTCTCCTCCTGTCGTGGGATCTGTCCTCGAACTATAAGTATGAACCAACAAACAAAAAAAAAAGAAAAAAAATCAATTCTTGACTTTGTATAAAGTGATAAAAATGGACAGATTTCTTCTCTCTCTTATTTAATTCTCTCCCCTAAACCACGGTGTTTGCTCTCCATCTTCCGCCATAAACATTTTGCAAAAGCTGAAATATTACCACTACGCTGCATAAAAAGCAACAAAAAAACCAGGCTGAGAGACACATAAGAACACTAAAAGACTGCCACTGTCATTACTATTCCAGAATCAAACCCACCCCTTCTCCTCTTTTGTGGGGCAAAAAATAAGAATCTGTTCGGTAAGTTCTTTGATTCTTGAATTTTTCTCTGTTTCTTGTTCTTTCCATGATGTCTGAATTTCATGTGTTCTTCAGGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

mRNA sequence

ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

Coding sequence (CDS)

ATGGATCATAAATGGACGATAGGTGGAGTCAACAGGTCTCTTAGGGTTCCCTCATCTGGGATCCTTGGAGAAGAGGATCAAGTTGGCCCTTGCGAACAACTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCAGTTCTACAACACTCATGAACACAACCCATCGTGTTCATCAGGTACCCTCCAGCTTTCTTTCTTCTATGCAACAATCTAA

Protein sequence

MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQFYNTHEHNPSCSSGTLQLSFFYATI

Homology

[Close]

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL
Match: A0A7J7L714 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_033150 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MDH WT+ GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDHTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL
Match: A0A7J7L6X3 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_020740 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MDH WT+ GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDHTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL
Match: A0A7J6ETR9 (Citrate synthase OS=Cannabis sativa OX=3483 GN=F8388_017907 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. NCBI nr
Match: KAF6138348.1 (hypothetical protein GIB67_033150, partial [Kingdonia uniflora] >KAF6138382.1 hypothetical protein GIB67_037672, partial [Kingdonia uniflora] >KAF6143171.1 hypothetical protein GIB67_033933, partial [Kingdonia uniflora])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MDH WT+ GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDHTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. NCBI nr
Match: KAF6138345.1 (hypothetical protein GIB67_033147 [Kingdonia uniflora] >KAF6138381.1 hypothetical protein GIB67_037671 [Kingdonia uniflora] >KAF6143167.1 hypothetical protein GIB67_033929 [Kingdonia uniflora] >KAF6145491.1 hypothetical protein GIB67_020740 [Kingdonia uniflora] >KAF6174450.1 hypothetical protein GIB67_030558 [Kingdonia uniflora])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MDH WT+ GV  S RVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDHTWTVVGVGGSPRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. NCBI nr
Match: TYK06708.1 (hypothetical protein E5676_scaffold13G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. NCBI nr
Match: ERM97427.1 (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
          MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 47

[Close]

BLAST of CmaCh19G000270 vs. NCBI nr
Match: KAF4348549.1 (hypothetical protein F8388_000228 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MDHKWTIGGVNRSLRVPSSGILGEEDQVGPCEQLDALSPFNPLSEMQ 48
           MD  WT+ GV  SLRVPSSGI GEEDQVGPCEQLDALSPFNPLSEM+
Sbjct: 193 MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMR 239

The following BLAST results are available for this feature:

BLAST of CmaCh19G000270 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G000270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7L714	9.9e-14	82.98	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_033150 PE=4 SV=1	[more]
A0A7J7L6X3	9.9e-14	82.98	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_020740 PE=4 SV=1	[more]
A0A6B9QFK3	1.3e-13	82.98	ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1	[more]
A0A6B9QF48	1.3e-13	82.98	ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1	[more]
A0A7J6ETR9	1.3e-13	82.98	Citrate synthase OS=Cannabis sativa OX=3483 GN=F8388_017907 PE=3 SV=1	[more]

BLAST of CmaCh19G000270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF6138348.1	2.0e-13	82.98	hypothetical protein GIB67_033150, partial [Kingdonia uniflora] >KAF6138382.1 hy...	[more]
KAF6138345.1	2.0e-13	82.98	hypothetical protein GIB67_033147 [Kingdonia uniflora] >KAF6138381.1 hypothetica...	[more]
TYK06708.1	2.7e-13	82.98	hypothetical protein E5676_scaffold13G00090 [Cucumis melo var. makuwa]	[more]
ERM97427.1	2.7e-13	82.98	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
KAF4348549.1	2.7e-13	82.98	hypothetical protein F8388_000228 [Cannabis sativa]	[more]

BLAST of CmaCh19G000270 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000270.1	CmaCh19G000270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006101	citrate metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004108	citrate (Si)-synthase activity