CmaCh19G000060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	exosome complex component RRP4 homolog
Location	Cma_Chr19: 43862 .. 46262 (-)
RNA-Seq Expression	CmaCh19G000060
Synteny	CmaCh19G000060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTAGTAAAGGACAACCACCTTCCTGAATAACGCCACTACTACAACGACAACCACCTTCAGTTTCGTGTTTTGTTCTTATTTATTTTTCTCCTTCCTTTGTTTGCTTGGTTTGTGGATTTTATCTCATTTCCTTATTAATTGTGGTTATTGTGAGTTGTGAATGCCATATACGGTTGTAATTCTATGCGGATTAAATTATTTTGTTATCATTTTGTGTATTAATATTAAAGAACTCAAAGGTATAAATATATGGTAGAAAAAAAAAAAAATCAAACAACCTCGTCGAACAAAGTACACCGCCTCCCTTGAGATCTAAGTAGCCCTCAAATAGTCTCCCTACACTATATACTCAAACAACCTCCCCTTCATCGAGAATTGAATCGCCTCCCCGAGGTCTATCTAGCCCTCAAACAGCCTCAAGTACCCCACAGACTCAAACAACCTCCCTTTACTCGAGACTTGAATTTCCTCCCCTGAGGTCTATGTAGCCCTCGAACCGCCTTCCCTTAATCGATGCTCAAATCTTTTCTCTAGAACTTTCGAACAAAGTACACCTTCTGTTTGACACATGGGATCGATGCTCAAATCTTTTCTCTAGAACTTTCGAACAAAATACACCTTTTGTTTGACACATGGGTCGCTTCCCGCCTCTTTTAAAATCTATGTAACCCTCAAATAGTCTACACTTTGAGCGTAAGCTCCCATGACTTTACATTGTTTCAAAAAAAAAAAAAGTTTGGGATCATCTTCTAAATTAACCCACCTACGTCTAACCATCCTCAACAGGCCAAACTGTCCAACTAAACTGTGGTCGGCTGTGGCCCAGTATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGGTTCCTACCGCCGTCGCACCTGGTTTGCTCGTCCCCCACTTTTTCTTGTCACTTTTTTTTACATGCATGATCGCACGTGGGGTTGGAAGTGAACCAAACATTATTTTTAAAAAACCAAAACCTTGAATTGAAGCTCTAAATTAAAAGTTTATAATACCGTATGTCTTTGCAAGTATTTTGTTATATAACCTAGAAATTTTCTTAATGCAGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGTATATAAATAATCACCATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTCGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTCGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTGTTATATCTTTTCTGATGTAATTGTCTGTTCTGAATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAATGAAACAGACAAGAAAAACTTATTTGGAGTCATGGTTATGATGCTGTAAATAGGAAAATGTGTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

mRNA sequence

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTATATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

Coding sequence (CDS)

ATGGGAAAGAACACCAAATCCTCCAAGCGCAGTTCAGTGTGCGAGAGGTTTCTCAAGGCTCTCGGCATGTGTCCTTCCCCAAACCGCCAAGAGGAACCCCTGGCTCCTGAAATGGACAAAAAACAGAGGCCCAACATCAATGGGGCACCTGAAATGGAGAAAAAACAAAAACTCGAACCAAACGACGCGTTTAGCGACTACATCAATCGGGCTAAGCGAAGGCTGGGAAGCATATCGAGCAAGCGACATGATCCGAGTAGCAAGGGAAAAGAGAATCTGAAGGAGGATCGGCGCTTTACAGATTATATCATCCGAGCTAGGAATAGGCTGAGGGCTACCTCCTCGACCGTGGGGCGGAGTATATTCCTTCTTTTCCTCTACCCTAGACTTCGGCTGCCGCTTTTGCTAAGAAGCCGCCGTCACGTCCGTCGTCGTCGCTCCACCTCGTCCACTTCTTTCCTTATCCTTCTCTTCGTTGCAACCATTGATGCTGTTGGCCCTCCGCATTTTGAACTTTGCCGGTTACTGGTCGCCTTGTCCCGGTTCCACTGCCGTCGTTGCATAGACGGCACCTGGTTCGCCCGTGATATGAGAGAATTACAGATTTCCTTGAATCAAACCCAGAGGATTCGGCTTCAAAGAGCCCTAGAACTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAATCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCAAAACGTTGGAGATTGAATATAAACTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGTTATTGTAG

Protein sequence

MGKNTKSSKRSSVCERFLKALGMCPSPNRQEEPLAPEMDKKQRPNINGAPEMEKKQKLEPNDAFSDYINRAKRRLGSISSKRHDPSSKGKENLKEDRRFTDYIIRARNRLRATSSTVGRSIFLLFLYPRLRLPLLLRSRRHVRRRRSTSSTSFLILLFVATIDAVGPPHFELCRLLVALSRFHCRRCIDGTWFARDMRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQLL

Homology

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BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.9e-49
Identity = 91/131 (69.47%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR+LQ+ L+QTQ++R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GE++AT+CGVVER++KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 317 LSSMNLPDGIQ 328
           LSSMN+PDGIQ
Sbjct: 123 LSSMNMPDGIQ 133

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BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-21
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 210 IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVER 269
           +RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VER
Sbjct: 5   MRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVER 64

Query: 270 INKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           +NKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 65  VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]

BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.7e-21
Identity = 51/131 (38.93%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           G + A++ G V+R+NKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 317 LSSMNLPDGIQ 328
           LSS+NLP GIQ
Sbjct: 144 LSSINLPGGIQ 151

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BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-20
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 210 IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVER 269
           +RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VER
Sbjct: 5   MRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVER 64

Query: 270 INKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           +NKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 65  VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]

BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-20
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 232 VIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERINKLIYVRALRARYKPEVGDII 291
           V+  DTI    D G ++GHGT     +++A++ G VER+NKLI V+AL+ RY  EVGDI+
Sbjct: 27  VVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIV 86

Query: 292 VGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDG 326
           VGR+TEV  KRW++  N   D+VL+LSSMNLP G
Sbjct: 87  VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 118

[Close]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 9.6e-64
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.8e-63
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 123/131 (93.89%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 122/131 (93.13%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL
Match: A0A1S3B5H2 (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 7.9e-58
Identity = 116/132 (87.88%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 196 DMRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDL 255
           DMR LQ+SLN TQ+IRL+RA E L+S+SSK NSDASV+VADTIPLNY+DGVLKGHGTLDL
Sbjct: 14  DMRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDL 73

Query: 256 NGEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVL 315
           NGEVVA+ICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVL
Sbjct: 74  NGEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVL 133

Query: 316 MLSSMNLPDGIQ 328
           MLSSMNLPDGIQ
Sbjct: 134 MLSSMNLPDGIQ 145

[Close]

BLAST of CmaCh19G000060 vs. NCBI nr
Match: XP_022967543.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima] >XP_022967544.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 2.0e-63
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. NCBI nr
Match: KAG6571439.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.3 bits (643), Expect = 5.8e-63
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. NCBI nr
Match: XP_023554062.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554063.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554064.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.3 bits (643), Expect = 5.8e-63
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

[Close]

BLAST of CmaCh19G000060 vs. NCBI nr
Match: XP_022963877.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963878.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963879.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >KAG7011206.1 Exosome complex component RRP4-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 5.8e-63
Identity = 129/131 (98.47%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

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BLAST of CmaCh19G000060 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 243.4 bits (620), Expect = 2.7e-60
Identity = 123/131 (93.89%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 317 LSSMNLPDGIQ 328
           LSSMNLPDGIQ
Sbjct: 121 LSSMNLPDGIQ 131

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BLAST of CmaCh19G000060 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-50
Identity = 91/131 (69.47%), Postives = 118/131 (90.08%), Query Frame = 0


Query: 197 MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 256
           MR+LQ+ L+QTQ++R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 257 GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 316
           GE++AT+CGVVER++KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 317 LSSMNLPDGIQ 328
           LSSMN+PDGIQ
Sbjct: 123 LSSMNMPDGIQ 133

The following BLAST results are available for this feature:

BLAST of CmaCh19G000060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	2.9e-49	69.47	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q8VBV3	5.7e-21	46.55	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q09704	9.7e-21	38.93	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q2KID0	1.7e-20	46.55	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q13868	3.7e-20	53.19	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of CmaCh19G000060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVC7	9.6e-64	100.00	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1HGD9	2.8e-63	98.47	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1EXY1	1.3e-60	93.89	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1K7S0	1.1e-59	93.13	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A1S3B5H2	7.9e-58	87.88	exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CmaCh19G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022967543.1	2.0e-63	100.00	exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima] >XP_0229675...	[more]
KAG6571439.1	5.8e-63	98.47	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023554062.1	5.8e-63	98.47	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02355406...	[more]
XP_022963877.1	5.8e-63	98.47	exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_02296...	[more]
XP_022931250.1	2.7e-60	93.89	exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos...	[more]

BLAST of CmaCh19G000060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	2.1e-50	69.47	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 232..283 e-value: 5.7E-17 score: 63.0
None	No IPR available	GENE3D	2.40.50.140		coord: 284..326 e-value: 2.8E-9 score: 38.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 206..327
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 240..278
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 206..327
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 281..326

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000060.1	CmaCh19G000060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding