CmaCh18G011770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G011770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr18: 9410920 .. 9412306 (+)
RNA-Seq Expression	CmaCh18G011770
Synteny	CmaCh18G011770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCCGGCGTCGGCCAGCTCTTTTGCTTTTGTTCTCTTCCCATCTTCGTTTCGACGAGAAATGGTGGAAATCTTGTTTCCCATTTACGTGGAGATTCTCTGTCCCAATGATCGTGACTACAATCGACGGAAACTCTCGAATTCCCCTGTTTTTCGGTAATTCTGCGGCACCGCACCAAGAAACTTATTCCCTGATCTTCATGATTTATATTTTTGTAATATTATTGATACAATTTAGGAGTAATCTTTCTTGAATCTCTTCTGGCCATATGTGGGGGCAATTATCAGCCAGAAACATTATGTGGCAGTTAAATCTTCGCGAATTCGTGAACAGCGATGGTTTTGCTTTCGTTTTCTTCATTAAAGGTGCGGACTATAACTCTGAGATTTTTGGCAAATTCATTTACTGAATCATTTGATAATTCCGCATGGAATGCAATGAAATGTGGTTTTACAGAATTTGTTGCTAAGATTGTTGCAGATTCTCTTGGGATGGATTATGATTAAAGTTACATGTTCTTTATTTTGACTTCATTTTTTTAGGTTATCTTCATTAGGTGGCCCCCCAGGTATGCTATGCTATCCACTAATCTCGATATTGCTATAGTTCTAGCTGATTGTTATGTTGAGGATTGTTGGGAGGGAGTCCCACATTCGTTAATTTAGAAAATCATCATAGGTCTGTAAGTAAGGAATACATCTTCATTGGTACGTGACCTTTTGGGGCTATGTTCAAAGTGGACAATATTATACCATTGTGGAGAATCGTGATTCCTAACATGTTATTCATCAGTAACAAGATTCAAACACGAGATTGATAATAAGATTCAAACACAGACATTCAATGAAAAATTTACTCTCCCATTCTATCTCATGCCAGCTGAAAGATGAGATCATTTGCAGTATTTATGAATGTGTTAGAATAATGGGATGTAGTTCACCTATATGGGATGTAGTTCAAACACGGGAACCTGTATGTATTATTGCATCACATATACATATATATATATAGTTCACCTATTGTTGTGATTTTGGTCTGTACTTGTACTGCATTGCCCAAAATAGGTAGTGCACAAAATTTAATCCGCTGAGCACACACATCAACCAGTAGAATCTCTCAAGGTGATAATGGTTTATGTTTGTTCCAGATAGCCATGGATGGTGATTGGAGTTACCTGTGACGGTGTTGACGATCGATACGATCACTGAGCTAAGGTAGTAGCCCATAGCCAGAGAAGCCCAGGAAAGAGATGTGGCCAAGGATCTCATGCTTGCAGGTGCTTCTGTGAAGAAAAATTCTAATGATCCAGCCAAGGAGAAAAGATCTGCTGATCCAAGAAATAAGTACTGGATGGCGATCCAAAGGAATGTGATGGGCAATGGTTGA

mRNA sequence

GCATCCGGCGTCGGCCAGCTCTTTTGCTTTTGTTCTCTTCCCATCTTCGTTTCGACGAGAAATGGTGGAAATCTTGTTTCCCATTTACGTGGAGATTCTCTGTCCCAATGATCGTGACTACAATCGACGGAAACTCTCGAATTCCCCTGTTTTTCGAGAAGCCCAGGAAAGAGATGTGGCCAAGGATCTCATGCTTGCAGGTGCTTCTGTGAAGAAAAATTCTAATGATCCAGCCAAGGAGAAAAGATCTGCTGATCCAAGAAATAAGTACTGGATGGCGATCCAAAGGAATGTGATGGGCAATGGTTGA

Coding sequence (CDS)

ATGGTGGAAATCTTGTTTCCCATTTACGTGGAGATTCTCTGTCCCAATGATCGTGACTACAATCGACGGAAACTCTCGAATTCCCCTGTTTTTCGAGAAGCCCAGGAAAGAGATGTGGCCAAGGATCTCATGCTTGCAGGTGCTTCTGTGAAGAAAAATTCTAATGATCCAGCCAAGGAGAAAAGATCTGCTGATCCAAGAAATAAGTACTGGATGGCGATCCAAAGGAATGTGATGGGCAATGGTTGA

Protein sequence

MVEILFPIYVEILCPNDRDYNRRKLSNSPVFREAQERDVAKDLMLAGASVKKNSNDPAKEKRSADPRNKYWMAIQRNVMGNG

Homology

[Close]

BLAST of CmaCh18G011770 vs. ExPASy TrEMBL
Match: A0A3Q7FQN9 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 33 EAQERDVAKDLMLAGASVKKNSNDPAKEKRSADPRNKYWMAIQRNVMGNG 83
          +AQE  V  DLML GASVKKNS  PAK KRSADPRN+Y  A QRNV+G+G
Sbjct: 4  DAQESAVVNDLMLKGASVKKNSIRPAKLKRSADPRNRYCNATQRNVIGSG 53

[Close]

BLAST of CmaCh18G011770 vs. ExPASy TrEMBL
Match: A0A7C9CFE1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 44 MLAGASVKKNSNDPAKEKRSADPRNKYWMAIQRNVMGNG 83
          ML GASVKKNS+ PA+  RSADP N YWMAIQ+ VMGNG
Sbjct: 1  MLEGASVKKNSSIPARVNRSADPNNAYWMAIQKKVMGNG 39

[Close]

BLAST of CmaCh18G011770 vs. NCBI nr
Match: KAG5618220.1 (hypothetical protein H5410_018044 [Solanum commersonii])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 33 EAQERDVAKDLMLAGASVKKNSNDPAKEKRSADPRNKYWMAIQRNVMGNG 83
          +AQE  V  DLML GASVKKNS  PAK KRSADPRN+Y  A QRNV+G+G
Sbjct: 4  DAQESAVVNDLMLKGASVKKNSIRPAKLKRSADPRNRYCNATQRNVIGSG 53

The following BLAST results are available for this feature:

BLAST of CmaCh18G011770 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G011770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3Q7FQN9	7.1e-08	70.00	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A7C9CFE1	1.7e-06	74.36	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]

BLAST of CmaCh18G011770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5618220.1	1.5e-07	70.00	hypothetical protein H5410_018044 [Solanum commersonii]	[more]

BLAST of CmaCh18G011770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G011770.1	CmaCh18G011770.1	mRNA