CmaCh18G011400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G011400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription termination factor MTEF1, chloroplastic
Location	Cma_Chr18: 9216185 .. 9217159 (+)
RNA-Seq Expression	CmaCh18G011400
Synteny	CmaCh18G011400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTTCTTCATCGTCTTCCTCCACAGGAAACAAATCTTCGGTGTCTGAAATGATAAGCAGAGTCCAAAATCTTCCTCCATGCAATCGCTTCCTCTTTCCTCGGTCCTCAACCCCATCTCTTAACCCTATGAGAAACCCCAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCATTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGTGAAAACCCCGATTCTCGCTCCGCCACTCTCTCCGCCGTCAAGTCCGTCGAGGTCTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTGCCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAGCCGCGTCATCGTTTATTAGTTGAGCATGGATTGTCACTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTCTGCAGTCGTCGACGGCAGATGGTTGA

mRNA sequence

TTCTCTTCTTCATCGTCTTCCTCCACAGGAAACAAATCTTCGGTGTCTGAAATGATAAGCAGAGTCCAAAATCTTCCTCCATGCAATCGCTTCCTCTTTCCTCGGTCCTCAACCCCATCTCTTAACCCTATGAGAAACCCCAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCATTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGTGAAAACCCCGATTCTCGCTCCGCCACTCTCTCCGCCGTCAAGTCCGTCGAGGTCTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTGCCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAGCCGCGTCATCGTTTATTAGTTGAGCATGGATTGTCACTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTCTGCAGTCGTCGACGGCAGATGGTTGA

Coding sequence (CDS)

ATGATAAGCAGAGTCCAAAATCTTCCTCCATGCAATCGCTTCCTCTTTCCTCGGTCCTCAACCCCATCTCTTAACCCTATGAGAAACCCCAATTTCAGAAAACCTCGGTTCACCATTTCCCTCAATTCCCAATTCTCCGACCATTCCGACGCCGGCCTTCATTTCCGGCAGAAGATACTCTACCTCGAGAATCACCTTCATGTCGATTTCCGGAAAGCATTCCGTGAAAACCCCGATTCTCGCTCCGCCACTCTCTCCGCCGTCAAGTCCGTCGAGGTCTGTCTCTCTTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTCCTCGACATGTACCCTCAGCTTCTCACTTCAGACCCGGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCATTTCCCGACATTCGGAAATCCATAGTTCGATGTCCTAGACTTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGCGACCTAGGTTTCGTTGGGTTGAATGCCATCACGTCCCAGACGACATTGCTACTGGTCTCGAGCGTTGAACATACGCTTCTGCCCAAGATTCAGTACCTAGAAAATTTGGGCTTATCGCACAAGGATGTGGTTAATATGGTATTAAGGTCTCCGGCGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGGATTATTTCTTAGGAGACATGAAGGGTGATTTATCGGAATTGAGAAGGTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGAAAGATTAAGCCGCGTCATCGTTTATTAGTTGAGCATGGATTGTCACTTTCTTTGTCGAAAATGCTGAAGGTTAGTGATGGGGAGTTCACTGCAAGGCTGTTAGAAATGCGTCTGCAGTCGTCGACGGCAGATGGTTGA

Protein sequence

MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRLQSSTADG

Homology

[Close]

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 3.7e-83
Identity = 160/256 (62.50%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 49  SDAGLHFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRV 108
           SD G+ FR+K++YL++ L+VD  KA R NP  RSA +S+V SVE  LSS GL   AVGR+
Sbjct: 27  SDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRI 86

Query: 109 LDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFL 168
           LDM+P LLTSDP+ ++ P+  FL NE+ I   DI KSI RCPRLL+S +D QLRPAL FL
Sbjct: 87  LDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL 146

Query: 169 RDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYL-ENLGLSHKDVVNMVLRSPALLTYSI 228
           + LGFVG + ITS+ T+LLVS+VE TL+PKI+YL E LG + ++V  MV+RSPALLTYS+
Sbjct: 147 KTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSV 206

Query: 229 QNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVS 288
            NNLVPKV++F+ +M+GD+ EL+RFPQYFSFSLERKIKPRHRLL EHG+ + LS+MLKVS
Sbjct: 207 DNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 266

Query: 289 DGEFTARLLEMRLQSS 304
           DG+F   LLE+RL+S+
Sbjct: 267 DGQFNHWLLELRLRSA 281

[Close]

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.5e-19
Identity = 58/211 (27.49%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 67  HVDFRKAFRENPDSRSATL-SAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLY 126
           H D ++     P     T+ + +K+    L  +G+  S +G+++   P L +   +  L 
Sbjct: 233 HRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLR 292

Query: 127 PIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFL-RDLGFV--GLNAITSQ 186
           P   +L+ EV I   D+ K +   P++LV  LD+       FL ++LG     +  +  +
Sbjct: 293 PTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKK 352

Query: 187 TTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDM 246
              LL  S++   LP+I +L ++G+ + D++ ++     +L+ S+++NL PK  Y + ++
Sbjct: 353 HPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNEL 412

Query: 247 KGDLSELRRFPQYFSFSLERKIKPRHRLLVE 274
             ++  L ++P Y S SL+++I+PRHR LVE
Sbjct: 413 NNEVHILTKYPMYLSLSLDQRIRPRHRFLVE 443

[Close]

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-17
Identity = 65/201 (32.34%), Postives = 104/201 (51.74%), Query Frame = 0


Query: 98  MGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDL 157
           +G+    + R+L + P L   D +  + P   F L E+ IP   I   +V+ P LL + L
Sbjct: 398 LGIPKEGMKRILVVKPILYCIDLEKTIAPKVRF-LQEMGIPNEAIGNMLVKFPSLLTNSL 457

Query: 158 DLQLRPALKFLRDLGFV---GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVN 217
             ++RP + FL     V    +  + +    LL  S+   L P ++Y  +LG+    +  
Sbjct: 458 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 517

Query: 218 MVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEH 277
           M+   P LL Y++ +NL PK  Y    M   L +L  FP++FS+SLER+I PRH ++VE+
Sbjct: 518 MIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVEN 577

Query: 278 GLSLSLSKMLKVSDGEFTARL 296
            ++  L  ML  +D EF  R+
Sbjct: 578 RVNFKLRYMLACTDEEFERRV 596

[Close]

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-17
Identity = 58/204 (28.43%), Postives = 109/204 (53.43%), Query Frame = 0


Query: 88  VKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIV 147
           +K     L ++G++ +   +++  +P +LT      L    +F L++  +    I + + 
Sbjct: 268 LKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEF-LSQTGLTEEQIGRILT 327

Query: 148 RCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGL 207
           RCP ++   ++ +LRP +++ R L  V +  +  +       S+E  L P  ++    G 
Sbjct: 328 RCPNIMSYSVEDKLRPTMEYFRSLN-VDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGF 387

Query: 208 SHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPR 267
              ++  M+ R  AL T+S++ N++PK DYF   M    SEL +FPQ+F +SL+ +IKPR
Sbjct: 388 GLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPR 447

Query: 268 HRLLVEHGLSLSLSKMLKVSDGEF 292
           + L+   G+ L L+++L +S  EF
Sbjct: 448 YELVQRSGVRLLLNQVLSLSGIEF 467

[Close]

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-11
Identity = 57/214 (26.64%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 88  VKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDPDYDLYP----IFDFLLNEVQIPFPDIR 147
           +K +   L  +G+   A  R+++  P +L  + D  + P    + DF + E  +P     
Sbjct: 287 IKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLP----- 346

Query: 148 KSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAITSQTTLL--LVSSVEHTLLPKIQY 207
             I + P ++  DL  +L    K L     +    + S    +   VS  E  +L  I +
Sbjct: 347 SIIAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDF 406

Query: 208 LENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLE 267
           L   G S      MV+  P +L  ++   +    +YF  +MK  L +L  FP +F++ LE
Sbjct: 407 LTKCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLE 466

Query: 268 RKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARL 296
             +KPRH+ +++ G+  SL+ ML  SD +F  R+
Sbjct: 467 STVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRM 494

[Close]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL
Match: A0A6J1HTW2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467425 PE=3 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 3.0e-168
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL
Sbjct: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL
Match: A0A6J1G0M2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449597 PE=3 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 8.4e-163
Identity = 300/307 (97.72%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           M+SRVQNLPP N FLFPRSS PSLNP+RNPNFRKPRFTISLNSQFSDHSDAGL FRQKIL
Sbjct: 1   MMSRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHL+VDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL
Match: A0A6J1DAK3 (transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019187 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.5e-143
Identity = 263/313 (84.03%), Postives = 288/313 (92.01%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDH------SDAGLH 60
           MISR+Q  PPC   LFPRSS PSL P  NPNFR PRFT+++N+QFS H      SD+G+ 
Sbjct: 1   MISRLQFPPPCILLLFPRSSPPSLKPSGNPNFRSPRFTVTINTQFSGHSGTATSSDSGIL 60

Query: 61  FRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQ 120
           FR+KILYLENHLHVD RKAF++NPDSRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQ
Sbjct: 61  FREKILYLENHLHVDSRKAFQQNPDSRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQ 120

Query: 121 LLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFV 180
           LLTSDP+YDLYPIFDFLLNEV+IPFPDIRKSI+RCPR+LVSDLDLQLRP L FLR+LGFV
Sbjct: 121 LLTSDPEYDLYPIFDFLLNEVRIPFPDIRKSIIRCPRILVSDLDLQLRPTLLFLRNLGFV 180

Query: 181 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 240
           GLNAIT QTT+LLVSS+EHTLLPKI+YLE+LG SHKDVVNMVLRSP LLTYSIQNNLVPK
Sbjct: 181 GLNAITCQTTMLLVSSIEHTLLPKIKYLESLGFSHKDVVNMVLRSPGLLTYSIQNNLVPK 240

Query: 241 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTAR 300
           VDYFLGDMKGDL EL+RFPQYFSFSLERKIKPRHRLLVEHGLSLSLS+MLKVSDGEFTAR
Sbjct: 241 VDYFLGDMKGDLLELKRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSRMLKVSDGEFTAR 300

Query: 301 LLEMRLQSSTADG 308
           ++EMRLQS+TADG
Sbjct: 301 VIEMRLQSATADG 313

[Close]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL
Match: A0A5D3D1U5 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00330 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.3e-131
Identity = 248/307 (80.78%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MISRVQNLPP-CNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKI 60
           MISR+Q  PP C  F FP S   SL P++NP+F KPRFT+SLN+QFSD SD+GL FR+KI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSD 120
           LYLENHL+VD RKAFRENP  RSA+LS +KSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSI+RCPR+LVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFL 240
           T QTTLLLVS+VEHTLLPKIQ+LE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTLLLVSNVEHTLLPKIQFLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMR 300
           GDMKGDL EL+ FPQYFSF+LERKIKPRHR LVEHGLSL LSKMLKVSDGEF A L EMR
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMR 300

Query: 301 LQSSTAD 307
            +S  AD
Sbjct: 301 CRSLMAD 307

[Close]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL
Match: A0A1S3BFK9 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489133 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.3e-131
Identity = 248/307 (80.78%), Postives = 273/307 (88.93%), Query Frame = 0


Query: 1   MISRVQNLPP-CNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKI 60
           MISR+Q  PP C  F FP S   SL P++NP+F KPRFT+SLN+QFSD SD+GL FR+KI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSD 120
           LYLENHL+VD RKAFRENP  RSA+LS +KSVEVCLSSMGL+ SAVGRVLDMYP+LLTS+
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSI+RCPR+LVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFL 240
           T QTTLLLVS+VEHTLLPKIQ+LE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTLLLVSNVEHTLLPKIQFLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMR 300
           GDMKGDL EL+ FPQYFSF+LERKIKPRHR LVEHGLSL LSKMLKVSDGEF A L EMR
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLKVSDGEFNAWLTEMR 300

Query: 301 LQSSTAD 307
            +S  AD
Sbjct: 301 CRSLMAD 307

[Close]

BLAST of CmaCh18G011400 vs. NCBI nr
Match: XP_022968085.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022968086.1 transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 600.9 bits (1548), Expect = 6.2e-168
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL
Sbjct: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. NCBI nr
Match: KAG7013135.1 (Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 586.6 bits (1511), Expect = 1.2e-163
Identity = 302/307 (98.37%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           MISRVQNLPP N FLFPRSS PSLNP+RNPNFRKPRFTISLNSQFSDHSDAGL FRQKIL
Sbjct: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. NCBI nr
Match: XP_022945324.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_022945325.1 transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 582.8 bits (1501), Expect = 1.7e-162
Identity = 300/307 (97.72%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           M+SRVQNLPP N FLFPRSS PSLNP+RNPNFRKPRFTISLNSQFSDHSDAGL FRQKIL
Sbjct: 1   MMSRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHL+VDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. NCBI nr
Match: XP_023542512.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542513.1 transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 580.9 bits (1496), Expect = 6.6e-162
Identity = 300/307 (97.72%), Postives = 301/307 (98.05%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60
           MISRVQNLPP N FLFPRSS PSL  +RNPNFRKPRFTISLNSQFSDHSDAGL FRQKIL
Sbjct: 1   MISRVQNLPPWNLFLFPRSSAPSLKVLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120
           YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240
           SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300
           DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTARLLEMRL 300

Query: 301 QSSTADG 308
           QSSTADG
Sbjct: 301 QSSTADG 307

[Close]

BLAST of CmaCh18G011400 vs. NCBI nr
Match: XP_022151208.1 (transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151209.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_022151210.1 transcription termination factor MTEF1, chloroplastic [Momordica charantia])

HSP 1 Score: 518.8 bits (1335), Expect = 3.1e-143
Identity = 263/313 (84.03%), Postives = 288/313 (92.01%), Query Frame = 0


Query: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDH------SDAGLH 60
           MISR+Q  PPC   LFPRSS PSL P  NPNFR PRFT+++N+QFS H      SD+G+ 
Sbjct: 1   MISRLQFPPPCILLLFPRSSPPSLKPSGNPNFRSPRFTVTINTQFSGHSGTATSSDSGIL 60

Query: 61  FRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQ 120
           FR+KILYLENHLHVD RKAF++NPDSRSATLSA+KSVEVCLSSMGLELSAVGRVLDMYPQ
Sbjct: 61  FREKILYLENHLHVDSRKAFQQNPDSRSATLSALKSVEVCLSSMGLELSAVGRVLDMYPQ 120

Query: 121 LLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFV 180
           LLTSDP+YDLYPIFDFLLNEV+IPFPDIRKSI+RCPR+LVSDLDLQLRP L FLR+LGFV
Sbjct: 121 LLTSDPEYDLYPIFDFLLNEVRIPFPDIRKSIIRCPRILVSDLDLQLRPTLLFLRNLGFV 180

Query: 181 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 240
           GLNAIT QTT+LLVSS+EHTLLPKI+YLE+LG SHKDVVNMVLRSP LLTYSIQNNLVPK
Sbjct: 181 GLNAITCQTTMLLVSSIEHTLLPKIKYLESLGFSHKDVVNMVLRSPGLLTYSIQNNLVPK 240

Query: 241 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEFTAR 300
           VDYFLGDMKGDL EL+RFPQYFSFSLERKIKPRHRLLVEHGLSLSLS+MLKVSDGEFTAR
Sbjct: 241 VDYFLGDMKGDLLELKRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSRMLKVSDGEFTAR 300

Query: 301 LLEMRLQSSTADG 308
           ++EMRLQS+TADG
Sbjct: 301 VIEMRLQSATADG 313

[Close]

BLAST of CmaCh18G011400 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 309.7 bits (792), Expect = 2.6e-84
Identity = 160/256 (62.50%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 49  SDAGLHFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRV 108
           SD G+ FR+K++YL++ L+VD  KA R NP  RSA +S+V SVE  LSS GL   AVGR+
Sbjct: 26  SDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRI 85

Query: 109 LDMYPQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFL 168
           LDM+P LLTSDP+ ++ P+  FL NE+ I   DI KSI RCPRLL+S +D QLRPAL FL
Sbjct: 86  LDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL 145

Query: 169 RDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYL-ENLGLSHKDVVNMVLRSPALLTYSI 228
           + LGFVG + ITS+ T+LLVS+VE TL+PKI+YL E LG + ++V  MV+RSPALLTYS+
Sbjct: 146 KTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSV 205

Query: 229 QNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVS 288
            NNLVPKV++F+ +M+GD+ EL+RFPQYFSFSLERKIKPRHRLL EHG+ + LS+MLKVS
Sbjct: 206 DNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVS 265

Query: 289 DGEFTARLLEMRLQSS 304
           DG+F   LLE+RL+S+
Sbjct: 266 DGQFNHWLLELRLRSA 280

[Close]

BLAST of CmaCh18G011400 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 218.8 bits (556), Expect = 6.2e-57
Identity = 116/239 (48.54%), Postives = 165/239 (69.04%), Query Frame = 0


Query: 53  LHFRQKILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMY 112
           L  ++KIL LE  + +D  KA   NP   SA L +++SV   L S G+  + + R+L M 
Sbjct: 53  LQMKEKILCLE-LMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMC 112

Query: 113 PQLLTSDPDYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLG 172
           P++LTSD   +LYP+F FL N++ +P    R+ I +CPRLL+S ++ QL+PAL +L+ LG
Sbjct: 113 PKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLG 172

Query: 173 FVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLV 232
              L A+  Q  +LLVSSVEHTL+PK+++LE++G S  + + M+LR PAL T+SI+NN  
Sbjct: 173 LKDLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFK 232

Query: 233 PKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEF 292
           PK+DYF+ ++KG L  L+ FPQYF+FSLE++IKPRH   +E GL L LS MLK +D EF
Sbjct: 233 PKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEF 290

[Close]

BLAST of CmaCh18G011400 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-35
Identity = 102/297 (34.34%), Postives = 156/297 (52.53%), Query Frame = 0


Query: 7   NLPPCNRFLF---------PRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQ 66
           N P  +R  F         P +S+ S +  ++P+      T +  +  ++  ++ +H  +
Sbjct: 19  NFPSLSRLRFNNFPALSFKPNTSSSSSSFFKSPDIPSLSSTTTTTTT-TETLESSIH--E 78

Query: 67  KILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSS--MGLELSAVGRVLDMYPQL 126
           K++YL++ L +DF      +P   S  LSAV+SV   +++  +   L    R++ M P+L
Sbjct: 79  KLIYLDS-LGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 138

Query: 127 LTSDPDYDLYPIFDFLLNEVQI-PFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFV 186
           LTS       P+  FLL EV +    D+R+++ R PRLL   +D QLRP L FL+ +G +
Sbjct: 139 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 198

Query: 187 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 246
                  + T LL  SV++ L+P+I Y E LG S +    M  R P L  YSI  N  PK
Sbjct: 199 D----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 258

Query: 247 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEF 292
           + Y + +M  D+ E+  FPQYFSFSLE +IKPRH      G+   L  MLK ++  F
Sbjct: 259 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]

BLAST of CmaCh18G011400 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-35
Identity = 102/297 (34.34%), Postives = 156/297 (52.53%), Query Frame = 0


Query: 7   NLPPCNRFLF---------PRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQ 66
           N P  +R  F         P +S+ S +  ++P+      T +  +  ++  ++ +H  +
Sbjct: 19  NFPSLSRLRFNNFPALSFKPNTSSSSSSFFKSPDIPSLSSTTTTTTT-TETLESSIH--E 78

Query: 67  KILYLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSS--MGLELSAVGRVLDMYPQL 126
           K++YL++ L +DF      +P   S  LSAV+SV   +++  +   L    R++ M P+L
Sbjct: 79  KLIYLDS-LGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPEL 138

Query: 127 LTSDPDYDLYPIFDFLLNEVQI-PFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFV 186
           LTS       P+  FLL EV +    D+R+++ R PRLL   +D QLRP L FL+ +G +
Sbjct: 139 LTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGIL 198

Query: 187 GLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPK 246
                  + T LL  SV++ L+P+I Y E LG S +    M  R P L  YSI  N  PK
Sbjct: 199 D----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEPK 258

Query: 247 VDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLKVSDGEF 292
           + Y + +M  D+ E+  FPQYFSFSLE +IKPRH      G+   L  MLK ++  F
Sbjct: 259 LKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307

[Close]

BLAST of CmaCh18G011400 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-32
Identity = 88/260 (33.85%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 40  SLNSQFSDHSDAGLHFRQKILYLENHLHVDFRKAFRENP--DSRSATLSAVKSVEVCLSS 99
           S +S  S  S   L+ + +  + EN  H+       +NP     +  LS + S    L S
Sbjct: 15  SFSSPPSPSSSKPLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLSVILSAVNLLKS 74

Query: 100 MGLELSAVGRVLDMYPQLLTSDPDYD---LYPIFDFLLNEVQIPFPDIRKSIVRCPRLLV 159
            G+      R++ + PQL +  P +D   L P+FDFL  E+     + R  IV CP +L 
Sbjct: 75  KGISDEDFPRLVFLCPQLFS--PTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILF 134

Query: 160 SDLDLQLRPALKFLRDLGFVGLNAITSQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVN 219
           SD++  LRP L +L++LG   LN  +     +L + VE  L  K+++L+++G  H++   
Sbjct: 135 SDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAAR 194

Query: 220 MVLRSPALLTYSIQNNLVPKVDYFLGDMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEH 279
           +  R PA+  YS+++NL PK ++ + DM+ +L EL++FPQYF+FSL ++I+PRH  L + 
Sbjct: 195 VCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKK 254

Query: 280 GLSLSLSKMLKVSDGEFTAR 295
            + +SLS+ML   D +F ++
Sbjct: 255 NVRVSLSRMLMWGDQKFYSK 271

The following BLAST results are available for this feature:

BLAST of CmaCh18G011400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	3.7e-83	62.50	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9FM80	8.5e-19	27.49	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	2.7e-17	32.34	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4JVI3	3.6e-17	28.43	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	5.0e-11	26.64	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CmaCh18G011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTW2	3.0e-168	100.00	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]
A0A6J1G0M2	8.4e-163	97.72	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1DAK3	1.5e-143	84.03	transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=...	[more]
A0A5D3D1U5	1.3e-131	80.78	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BFK9	1.3e-131	80.78	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]

BLAST of CmaCh18G011400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968085.1	6.2e-168	100.00	transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022...	[more]
KAG7013135.1	1.2e-163	98.37	Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma su...	[more]
XP_022945324.1	1.7e-162	97.72	transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_0...	[more]
XP_023542512.1	6.6e-162	97.72	transcription termination factor MTEF1, chloroplastic [Cucurbita pepo subsp. pep...	[more]
XP_022151208.1	3.1e-143	84.03	transcription termination factor MTEF1, chloroplastic [Momordica charantia] >XP_...	[more]

BLAST of CmaCh18G011400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03050.1	2.6e-84	62.50	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	6.2e-57	48.54	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	1.3e-35	34.34	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	1.3e-35	34.34	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	2.4e-32	33.85	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 177..208 e-value: 3.2 score: 16.7 coord: 106..138 e-value: 5.4 score: 16.0 coord: 246..277 e-value: 1.8E-5 score: 34.1 coord: 213..245 e-value: 0.0014 score: 27.9 coord: 143..174 e-value: 5.6E-4 score: 29.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 141..291 e-value: 2.1E-30 score: 105.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 36..303
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 70..302 e-value: 1.2E-47 score: 164.3
None	No IPR available	PANTHER	PTHR13068:SF36	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 36..303

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G011400.1	CmaCh18G011400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding