CmaCh18G003790 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACAGCATGGTAACTGTAAAAAGAACTTCATTGCTTGTTGTGTTTGATGTGGAAGTTAGGAGAGCAAGACTTCATTTATATTATGCAGAGACGTATAGAGCCTTTTCTTTTGGTGTCTTTATTCCTTATTTCTTTGGGGATGCTATTCTTGTTTCTTACAGATAAGAAGATGCTTAGCCTTGCTGAGCCACTTTCCTGAAACTTGTGGAATCTGAGATTATTTTGTTGATGGGTTATTTCCAGGTTTTGTATTATGTATTCTTAAGGCTGTCACATTTATATTTTAATGAATTAATCTTTATGCCTATTTTTTAAAAAAAAAATAATTATCTAGTTGATTTTTCTCGGAGTATTTATGACTTGATAACTCGAACAACTTGAACTTGGGTTGATATAGATTTTTTTTCTTTTAATTGGGTTATGTTGTACTTTTTGGATGACTTGATAACTCGAACAACCTGAACTTGGGTTGATATATATTTTTTTTTCTTTTAATTGGGTTATGTTGTACTTTTTGGATGACTTGATAACTCGAACAACTTGAACTTGGGTTGATATAGATTTTTTTTCTTTTAATTGGGTTATGTTGTACTTTTTGGAAAATCGAAAATTTGTTTAGTTCACAGGTGGAAGCTTTTTTTGTCGGGTTGTGAAAATATGGTTCACAATTCAACCCTGTCATGCTTTTAAGATTGTTAGAAAAATTAAGAATATTTAATGTTTGTAGTAAATGCTAGTAATGTCCGGAGTAATGTCGTATGTATAATGTTTAATATTTGAGTTTTATGAGATTTTAATTATTAATCTATAAATAAATGGAATGTTTTTAAATAATTATAAAAAAATGAATAAAATCCAACTCAAAGATAGAGGTTTGGATAGAGGGTTGAGTTGGGTTGAAATGCAAACTTTATTTCTGTCTCTTCAATTTTGAACATGAGTTGAGTTAAGATGTAAACTTTATTTGGGTCTTTTCCGTCAAACACCAATATAAACACCAAAACCAAGTATTACCCGTTCCTTCGAAGCTATAACTACCAAAGTAGACTTGTTGTTAAACCTTAACCGGAAAGAAGTGAAACCAAGTATTATCGGTTCCTTTAAAGCTATAACTACCAAAGTAGACTTGCTCTTAAACCTATACAGGAAAGGAGAGAAGCAGTGAGATCGAGTTAGAAAAGAGATACGATACTTCATTTTACCAGGGTTATTTGAAGAACCTCCACAGTAAATTCATTAAATCCGGAATGGTCTGAGTTATAAATCCAGCCAACCCTAAAATTTTACCTTTTTAGTTTGTAAAAAAAAAAGCCAATAATAATAGCTATTTCACTTTATTCAGCATAAAAAAAGAAAAAAAAAAAAAGATCAGTTGGTGCAAAAATTGCAACGAATTTTCATCTTATCTTAACGTGTTGACTGTGCAGACAATTGAACCACGAGGCATACAAATACATCACCACGTGGCAACAACCCCACGTGTCACATGCTAAACTCTGCCACTTCTTCCTATAAACTACACCTTACAAACCCCTTCAAATCAACACGTTCAGATTCAGAAAGAACACAGAGAGAAAGAGAGAACTCCGGTCGGTGTCGGTGTTTGAAACTGAAACAATGGCAGTAAGCATATCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTCCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCACCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGGTATCATTCCTCATACCAATTTCATGTTTTAGAATTGTTATTTTAGTGATTTGTTTCATGGGTTTGGTTTGTCGTATAGAATGGACATGGCGTGGATGCGAACCGAGACCCGAGACCGGATTTGGCGTATGAAGATGCGAAGGGAAGAGCGAAGGAAGGAGCCCAAGACATGAAGGAGAAGGCGAAAGACTACGCCGAGGGGACGAAAGACATGGCGAAAGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAAGTGAAAGACTACGCCGACGATGCGAAGGAGAAGGCTAAGGAAGGGACGAACCGGGTAGCGGAGACGGCGGAGGATGCGAGCGAGAGAGCAAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAAAACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGTTGTGGATCTTAGGAGGAGTGGGAGAAAGTTGGATGATTAAAATAAGGGGTGGGGTTCCTTTTAATTGCATCAATGAAATTTCATGTTGTTTTAGGCTTTTGATCAAGAGATATTCTGTGTGTTGTGTGGGAACTGTGGAATAAGGTATAGATATTTGAAGGAAGTTTGTTTTGTTATCCACTTTAAAGTGTGTATGAATTTAAACACACCAAGGAATTTGTTTGGGGTATATACATTGGGTATCATTATAGCTAATGGATATATGGGATATATAGTTTCGGTTAAATATATCTTTACCATGAAGATCTATCAAATATTTCGATATCTGCGAGTGAAGTATACCATCTGCACCATCACTGTTGTGTTTTGTTTTCGGAGGGCTTCTTTCTCAATAACTAGCTCCATAACTAGCTCCTCATCAACTGACTTCCTTCACTAGTCAACCAATCACTAGTCAGCAGCAATCGATAGTGTAGT ATGAACAGCATGGTAACTGTAAAAAGAACTTCATTGCTTGTTGTGTTTGATGTGGAAGTTAGGAGAGCAAGACTTCATTTATATTATGCAGAGACATTCAGAAAGAACACAGAGAGAAAGAGAGAACTCCGGTCGGTGTCGGTGTTTGAAACTGAAACAATGGCAGTAAGCATATCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTCCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCACCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGAATGGACATGGCGTGGATGCGAACCGAGACCCGAGACCGGATTTGGCGTATGAAGATGCGAAGGGAAGAGCGAAGGAAGGAGCCCAAGACATGAAGGAGAAGGCGAAAGACTACGCCGAGGGGACGAAAGACATGGCGAAAGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAAGTGAAAGACTACGCCGACGATGCGAAGGAGAAGGCTAAGGAAGGGACGAACCGGGTAGCGGAGACGGCGGAGGATGCGAGCGAGAGAGCAAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAAAACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGTTGTGGATCTTAGGAGGAGTGGGAGAAAGTTGGATGATTAAAATAAGGGGTGGGGTTCCTTTTAATTGCATCAATGAAATTTCATGTTGTTTTAGGCTTTTGATCAAGAGATATTCTGTGTGTTGTGTGGGAACTGTGGAATAAGGTATAGATATTTGAAGGAAGTTTGTTTTGTTATCCACTTTAAAGTGTGTATGAATTTAAACACACCAAGGAATTTGTTTGGGGTATATACATTGGGTATCATTATAGCTAATGGATATATGGGATATATAGTTTCGGTTAAATATATCTTTACCATGAAGATCTATCAAATATTTCGATATCTGCGAGTGAAGTATACCATCTGCACCATCACTGTTGTGTTTTGTTTTCGGAGGGCTTCTTTCTCAATAACTAGCTCCATAACTAGCTCCTCATCAACTGACTTCCTTCACTAGTCAACCAATCACTAGTCAGCAGCAATCGATAGTGTAGT ATGAACAGCATGGTAACTGTAAAAAGAACTTCATTGCTTGTTGTGTTTGATGTGGAAGTTAGGAGAGCAAGACTTCATTTATATTATGCAGAGACATTCAGAAAGAACACAGAGAGAAAGAGAGAACTCCGGTCGGTGTCGGTGTTTGAAACTGAAACAATGGCAGTAAGCATATCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTCCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCACCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGAATGGACATGGCGTGGATGCGAACCGAGACCCGAGACCGGATTTGGCGTATGAAGATGCGAAGGGAAGAGCGAAGGAAGGAGCCCAAGACATGAAGGAGAAGGCGAAAGACTACGCCGAGGGGACGAAAGACATGGCGAAAGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAAGTGAAAGACTACGCCGACGATGCGAAGGAGAAGGCTAAGGAAGGGACGAACCGGGTAGCGGAGACGGCGGAGGATGCGAGCGAGAGAGCAAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAGAATATTGGGGAGAAGGCGAAGAAAACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGTTGTGGATCTTAGGAGGAGTGGGAGAAAGTTGGATGATTAA MNSMVTVKRTSLLVVFDVEVRRARLHLYYAETFRKNTERKRELRSVSVFETETMAVSISLAKNVIFNLCKAFPNASPSPTLRYSTKISRVSFTTSASKQPWNGHGVDANRDPRPDLAYEDAKGRAKEGAQDMKEKAKDYAEGTKDMAKEETNKAAETARAAKEKVKDYADDAKEKAKEGTNRVAETAEDASERAKESAKGMKEKTEEMAKEGTKKATETVQNIGEKAKKTVEGAWEAAKDTTQKIKERVVGSDEDERDEDVVDLRRSGRKLDD Homology
BLAST of CmaCh18G003790 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.5e-06 Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy Swiss-Prot
Match: P23283 (Desiccation-related protein PCC3-06 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05 Identity = 64/203 (31.53%), Postives = 92/203 (45.32%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05 Identity = 51/150 (34.00%), Postives = 75/150 (50.00%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy Swiss-Prot
Match: Q9LW12 (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 8.1e-05 Identity = 37/112 (33.04%), Postives = 67/112 (59.82%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy Swiss-Prot
Match: Q03968 (Late embryogenesis abundant protein, group 3 OS=Triticum aestivum OX=4565 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.4e-04 Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy TrEMBL
Match: A0A6J1K2X8 (late embryogenesis abundant protein, group 3-like OS=Cucurbita maxima OX=3661 GN=LOC111490179 PE=4 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 2.6e-107 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy TrEMBL
Match: A0A6J1GR50 (late embryogenesis abundant protein, group 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456764 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 4.0e-100 Identity = 211/221 (95.48%), Postives = 215/221 (97.29%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy TrEMBL
Match: A0A6J1GR73 (late embryogenesis abundant protein, group 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456764 PE=4 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 1.1e-86 Identity = 192/221 (86.88%), Postives = 196/221 (88.69%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy TrEMBL
Match: A0A0A0LRY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66 Identity = 163/247 (65.99%), Postives = 194/247 (78.54%), Query Frame = 0
BLAST of CmaCh18G003790 vs. ExPASy TrEMBL
Match: A0A5D3DRU4 (ABA-inducible protein PHV A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00910 PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 6.5e-66 Identity = 161/235 (68.51%), Postives = 187/235 (79.57%), Query Frame = 0
BLAST of CmaCh18G003790 vs. NCBI nr
Match: XP_022994469.1 (late embryogenesis abundant protein, group 3-like [Cucurbita maxima]) HSP 1 Score: 398.3 bits (1022), Expect = 5.4e-107 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CmaCh18G003790 vs. NCBI nr
Match: KAG7012442.1 (hypothetical protein SDJN02_25194, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 375.6 bits (963), Expect = 3.8e-100 Identity = 213/226 (94.25%), Postives = 217/226 (96.02%), Query Frame = 0
BLAST of CmaCh18G003790 vs. NCBI nr
Match: XP_022954521.1 (late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata]) HSP 1 Score: 374.4 bits (960), Expect = 8.4e-100 Identity = 211/221 (95.48%), Postives = 215/221 (97.29%), Query Frame = 0
BLAST of CmaCh18G003790 vs. NCBI nr
Match: KAG6573277.1 (hypothetical protein SDJN03_27164, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 373.6 bits (958), Expect = 1.4e-99 Identity = 212/226 (93.81%), Postives = 217/226 (96.02%), Query Frame = 0
BLAST of CmaCh18G003790 vs. NCBI nr
Match: XP_023542553.1 (late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 370.5 bits (950), Expect = 1.2e-98 Identity = 211/230 (91.74%), Postives = 216/230 (93.91%), Query Frame = 0
BLAST of CmaCh18G003790 vs. TAIR 10
Match: AT4G21020.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 99.8 bits (247), Expect = 3.7e-21 Identity = 89/232 (38.36%), Postives = 120/232 (51.72%), Query Frame = 0
BLAST of CmaCh18G003790 vs. TAIR 10
Match: AT5G44310.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20 Identity = 71/162 (43.83%), Postives = 100/162 (61.73%), Query Frame = 0
BLAST of CmaCh18G003790 vs. TAIR 10
Match: AT5G44310.2 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 95.5 bits (236), Expect = 7.0e-20 Identity = 71/162 (43.83%), Postives = 100/162 (61.73%), Query Frame = 0
BLAST of CmaCh18G003790 vs. TAIR 10
Match: AT3G15670.1 (Late embryogenesis abundant protein (LEA) family protein ) HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06 Identity = 37/112 (33.04%), Postives = 67/112 (59.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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