CmaCh18G003020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G003020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr18: 1611564 .. 1612539 (+)
RNA-Seq Expression	CmaCh18G003020
Synteny	CmaCh18G003020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATAAGCTTCATCGTTAAGAGGGAAACAGTTGGATCACTAGCTAAGACTCCTAAATGATTGCTTAGTGATAAAGGAGTTAAGGGTGTAGAGACAACTAGAAGGTTTGCATAGAAGCAACCATCCTTGAAAGAGTGTAATAGCTCACTTATCAAGCGCTCTTGCACTGAAGATGAAAGGGCTAAGCGATTTGTCGAAGCTGTGGTATGTAAAAATGCATCGGTAGGGGAGCGTTTTGCCTTAGAGGGAAGCACCTGCACGAGCAGTGGTGGACAAAGCGGAAGTGAGAATGTCGGCAAATCTTTGACCGTCAAATCTTTGACACTTCTTTGTAGAATGAAAGATTACATGGATGAACTTTCAAATTTTATGTTTCACTTTAAGAAACTTGTTTGCAAAACCCCTATATTTCTTGAGATTTATATAATAAAAAGAGAAGAAAATGCCATGGATGTGGGCCCATTGGGCCTTCTAGATACTACGACTCAGACGGCCCACATCCAAAACATCACAAAAGTATTTAAGGAAAAAAGAAAATTGGGCATACCACGTTTTTCACTTGTGAAACCAATCCCTCCCAACAATAATACACATTTTTCTAAATATATTCATTAGTCATTGTCCAATCATGTAGACTTGGAAGACACCTAAACCATTAGGCATTCTTGGTGTGAGATCTCACATAAGTTGAAGAGAAAAACGAACATTATTTATAAGGGTATGTAAGCTTTTCTCTAGTAGACATTTTTTCAAAGCCCGAAATGGAAAGCTCAAAGAAGACCATATCTATTTTCCTCCTTCAAAGTACTTGAAAAGTCTATGTCCATTCAACACGATTGATGCACTTGATCTTTAGATGTGGGTATTATTGTCTAGAGCGATGATATATGGTCAGAAAATAATGCTAGAGTCCAAAAACACACGGGCAAAGGCATACCAAAAAAGGCTCAAGGGAAGAATTTACCATGTTAG

mRNA sequence

ATGGGGGATAAGCTTCATCAGTGTAATAGCTCACTTATCAAGCGCTCTTGCACTGAAGATGAAAGGGCTAAGCGATTTGTCGAAGCTGTGGTATGTAAAAATGCATCGGTAGGGGAGCGTTTTGCCTTAGAGGGAAGCACCTGCACGAGCAGTGGTGGACAAAGCGGAAGTGAGAATGTCGGCAAATCTTTGACCGTCAAATCTTTGACACTTCTTTGTAGAATGAAAGATTACATGGATGAACTTTCAAATTTTATGTTTCACTTTAAGAAACTTGTTTGCAAAACCCCTATATTTCTTGAGATTTATATAATAAAAAGAGAAGAAAATGCCATGGATGTGGGCCCATTGGGCCTTCTAGATACTACGACTCAGACGGCCCACATCCAAAACATCACAAAAAGCGATGATATATGGTCAGAAAATAATGCTAGAGTCCAAAAACACACGGGCAAAGGCATACCAAAAAAGGCTCAAGGGAAGAATTTACCATGTTAG

Coding sequence (CDS)

ATGGGGGATAAGCTTCATCAGTGTAATAGCTCACTTATCAAGCGCTCTTGCACTGAAGATGAAAGGGCTAAGCGATTTGTCGAAGCTGTGGTATGTAAAAATGCATCGGTAGGGGAGCGTTTTGCCTTAGAGGGAAGCACCTGCACGAGCAGTGGTGGACAAAGCGGAAGTGAGAATGTCGGCAAATCTTTGACCGTCAAATCTTTGACACTTCTTTGTAGAATGAAAGATTACATGGATGAACTTTCAAATTTTATGTTTCACTTTAAGAAACTTGTTTGCAAAACCCCTATATTTCTTGAGATTTATATAATAAAAAGAGAAGAAAATGCCATGGATGTGGGCCCATTGGGCCTTCTAGATACTACGACTCAGACGGCCCACATCCAAAACATCACAAAAAGCGATGATATATGGTCAGAAAATAATGCTAGAGTCCAAAAACACACGGGCAAAGGCATACCAAAAAAGGCTCAAGGGAAGAATTTACCATGTTAG

Protein sequence

MGDKLHQCNSSLIKRSCTEDERAKRFVEAVVCKNASVGERFALEGSTCTSSGGQSGSENVGKSLTVKSLTLLCRMKDYMDELSNFMFHFKKLVCKTPIFLEIYIIKREENAMDVGPLGLLDTTTQTAHIQNITKSDDIWSENNARVQKHTGKGIPKKAQGKNLPC

Homology

[Close]

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL
Match: A0A6D2I566 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS8579 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 9  NSSLIKRSCTEDERAKRFVEAVVCKNASVGERFALEGSTCTSSGGQSGSENVGKS 64
          NSSLI+RSC EDERAKR  EAV C+NASVGER AL GS   S GG+SGSENVG S
Sbjct: 26 NSSLIERSCAEDERAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLS 80

[Close]

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL
Match: A0A2N9G3L9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22064 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 9   NSSLIKRSCTEDERAKRFVEAVVCKNASVGERFALEGSTCTSSGGQSGSENVGKS 64
           NSSLI+RSC E   AKR  EAV CK ASVGER ALEGST  S GG+SGSENVG S
Sbjct: 620 NSSLIERSCAEMNGAKRSAEAVGCKKASVGERSALEGSTRESGGGRSGSENVGLS 674

[Close]

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL
Match: A0A151TSK6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKN SVGER ALEG TC SS
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL
Match: A0A151RN55 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-07
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKN SVGER ALEG TC SS
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL
Match: A0A067L301 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00471 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKNASVGER ALEGST  S 
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTRASR 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. NCBI nr
Match: CAA7021344.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 9  NSSLIKRSCTEDERAKRFVEAVVCKNASVGERFALEGSTCTSSGGQSGSENVGKS 64
          NSSLI+RSC EDERAKR  EAV C+NASVGER AL GS   S GG+SGSENVG S
Sbjct: 26 NSSLIERSCAEDERAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLS 80

[Close]

BLAST of CmaCh18G003020 vs. NCBI nr
Match: KYP43984.1 (hypothetical protein KK1_034569 [Cajanus cajan])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKN SVGER ALEG TC SS
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. NCBI nr
Match: KYP38298.1 (hypothetical protein KK1_040460 [Cajanus cajan] >KYP70014.1 hypothetical protein KK1_009222 [Cajanus cajan])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKN SVGER ALEG TC SS
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. NCBI nr
Match: KAF8042307.1 (hypothetical protein BT93_A0818 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-06
Identity = 40/75 (53.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 1  MGDKLHQ------------CNSSLIKRSCTEDERAKRFVEAVVCKNASVGERFALEGSTC 60
          MGDKLH+             N  L+ +   E   AKR  +AV CKN SVGER ALEGSTC
Sbjct: 1  MGDKLHRREGNSPDHQLKPLNDRLVIK---EMNGAKRSTKAVGCKNTSVGERSALEGSTC 60

Query: 61 TSSGGQSGSENVGKS 64
           S GG+SGSENVG S
Sbjct: 61 ESRGGRSGSENVGLS 72

[Close]

BLAST of CmaCh18G003020 vs. NCBI nr
Match: KDP42772.1 (hypothetical protein JCGZ_00471 [Jatropha curcas])

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-06
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MGDKLHQCNSS--------LIKRSCTED-ERAKRFVEAVVCKNASVGERFALEGSTCTSS 60
          MGDKLH+   +        L  RS  ++   AKR  EAV CKNASVGER ALEGST  S 
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTRASR 60

Query: 61 GGQSGSENVGKS 64
          GG+SGSENVG S
Sbjct: 61 GGRSGSENVGLS 72

The following BLAST results are available for this feature:

BLAST of CmaCh18G003020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G003020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6D2I566	1.8e-10	74.55	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS8579 P...	[more]
A0A2N9G3L9	4.4e-09	72.73	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22064 PE=4 SV=1	[more]
A0A151TSK6	5.4e-07	56.94	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1	[more]
A0A151RN55	5.4e-07	56.94	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1	[more]
A0A067L301	3.5e-06	56.94	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00471 PE=4 SV=1	[more]

BLAST of CmaCh18G003020 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA7021344.1	3.7e-10	74.55	unnamed protein product [Microthlaspi erraticum]	[more]
KYP43984.1	1.1e-06	56.94	hypothetical protein KK1_034569 [Cajanus cajan]	[more]
KYP38298.1	1.1e-06	56.94	hypothetical protein KK1_040460 [Cajanus cajan] >KYP70014.1 hypothetical protein...	[more]
KAF8042307.1	4.3e-06	53.33	hypothetical protein BT93_A0818 [Corymbia citriodora subsp. variegata]	[more]
KDP42772.1	7.2e-06	56.94	hypothetical protein JCGZ_00471 [Jatropha curcas]	[more]

BLAST of CmaCh18G003020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G003020.1	CmaCh18G003020.1	mRNA