CmaCh18G001540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G001540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr18: 789798 .. 790479 (-)
RNA-Seq Expression	CmaCh18G001540
Synteny	CmaCh18G001540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACAGCAAGGAAGGCAACCTTTACAACATGAAGCCATGGCAAAAGCGACCACGACATGGCAACGGCCCCCAACAGGTCACTGGAAGCTAAATATTGACGCTTCATGGATAGCGAAACAGGTCGAGGGACCTAGGATTGTTTCAAAAGTCGAACAAAAGGAAACCTGTAGCACTTGGAAGATCAAAGTTATGGATTTGGCTGCAATTCTTGAAGGGCTTAAGATTCTTGTACCAACCGACCATTGCCCTGTTCTTGTTGAATTAGACTCCATTCACTCTTCGTACCCTCCCTCTGAAATGAGTGCTTCGTGGATCACTTCCACTGTCCATTCCTCCCTCACCACCAATTGAACCTACGTAGCTATATCGATATCCAACCCTTTGCTCTAAACCACTTTCCCCACTAGAAGTTCGAGAAGAATCTCGCCAAAAGTCATGGAGGTCGAGCTTGAATACACGTTCCTCCATGGAGTGGCAAATAATGGGCAATCATTTTTGACCATATATAAGTGGCATGGTCATGCTTGTCCAGAGCGGGTTGCCCCTACATGTATATCCATTCTAAACCGTTTACCTTATTTTTATTGTATGTATTATATTCTAGCTGAGTTATTTACCTTTCTTGTAATTTTGTTGGTATATGACTCCTTGACACTTTTAACGTTTACACCTACCAAAG

mRNA sequence

ATGCCACAGCAAGGAAGGCAACCTTTACAACATGAAGCCATGGCAAAAGCGACCACGACATGGCAACGGCCCCCAACAGGTCACTGGAAGCTAAATATTGACGCTTCATGGATAGCGAAACAGGTCGAGGGACCTAGGATTGTTTCAAAAGTCGAACAAAAGGAAACCTGTAGCACTTGGAAGATCAAAGTTATGGATTTGGCTGCAATTCTTGAAGGGCTTAAGATTCTTGTACCAACCGACCATTGCCCTGTTCTTGTTGAATTAGACTCCATTCACTCTTCGTACCCTCCCTCTGAAATGAGTGCTTCGTGGATCACTTCCACTGTCCATTCCTCCCTCACCACCAATTGAACCTACGTAGCTATATCGATATCCAACCCTTTGCTCTAAACCACTTTCCCCACTAGAAGTTCGAGAAGAATCTCGCCAAAAGTCATGGAGGTCGAGCTTGAATACACGTTCCTCCATGGAGTGGCAAATAATGGGCAATCATTTTTGACCATATATAAGTGGCATGGTCATGCTTGTCCAGAGCGGGTTGCCCCTACATGTATATCCATTCTAAACCGTTTACCTTATTTTTATTGTATGTATTATATTCTAGCTGAGTTATTTACCTTTCTTGTAATTTTGTTGGTATATGACTCCTTGACACTTTTAACGTTTACACCTACCAAAG

Coding sequence (CDS)

ATGCCACAGCAAGGAAGGCAACCTTTACAACATGAAGCCATGGCAAAAGCGACCACGACATGGCAACGGCCCCCAACAGGTCACTGGAAGCTAAATATTGACGCTTCATGGATAGCGAAACAGGTCGAGGGACCTAGGATTGTTTCAAAAGTCGAACAAAAGGAAACCTGTAGCACTTGGAAGATCAAAGTTATGGATTTGGCTGCAATTCTTGAAGGGCTTAAGATTCTTGTACCAACCGACCATTGCCCTGTTCTTGTTGAATTAGACTCCATTCACTCTTCGTACCCTCCCTCTGAAATGAGTGCTTCGTGGATCACTTCCACTGTCCATTCCTCCCTCACCACCAATTGA

Protein sequence

MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTWKIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN

Homology

[Close]

BLAST of CmaCh18G001540 vs. ExPASy TrEMBL
Match: A0A6J1K3J0 (uncharacterized protein LOC111490320 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490320 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.1e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 60
           MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW
Sbjct: 15  MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 74

Query: 61  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN
Sbjct: 75  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 131

[Close]

BLAST of CmaCh18G001540 vs. ExPASy TrEMBL
Match: A0A6J1GUH7 (uncharacterized protein LOC111457054 OS=Cucurbita moschata OX=3662 GN=LOC111457054 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 60
           MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQV+GPRIVSKVEQK TCSTW
Sbjct: 15  MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVKGPRIVSKVEQKATCSTW 74

Query: 61  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KIKVMDLAAILEGLK+LVPTDHCPVLVELDSIHSSYPPSE SASWITS VHSSLTTN
Sbjct: 75  KIKVMDLAAILEGLKMLVPTDHCPVLVELDSIHSSYPPSETSASWITSIVHSSLTTN 131

[Close]

BLAST of CmaCh18G001540 vs. NCBI nr
Match: XP_022994678.1 (uncharacterized protein LOC111490320 isoform X1 [Cucurbita maxima] >XP_022994679.1 uncharacterized protein LOC111490320 isoform X2 [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 60
           MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW
Sbjct: 15  MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 74

Query: 61  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN
Sbjct: 75  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 131

[Close]

BLAST of CmaCh18G001540 vs. NCBI nr
Match: XP_022954949.1 (uncharacterized protein LOC111457054 [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 8.4e-57
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 60
           MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQV+GPRIVSKVEQK TCSTW
Sbjct: 15  MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVKGPRIVSKVEQKATCSTW 74

Query: 61  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KIKVMDLAAILEGLK+LVPTDHCPVLVELDSIHSSYPPSE SASWITS VHSSLTTN
Sbjct: 75  KIKVMDLAAILEGLKMLVPTDHCPVLVELDSIHSSYPPSETSASWITSIVHSSLTTN 131

[Close]

BLAST of CmaCh18G001540 vs. NCBI nr
Match: KAG6573045.1 (hypothetical protein SDJN03_26932, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTW 60
           MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQV+GPRIVSKVEQK  CSTW
Sbjct: 1   MPQQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVKGPRIVSKVEQKAICSTW 60

Query: 61  KIKVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KIKVMDLAAILEGLK+LVPTDHCPVLVELDSIHSSYPPSE SASWITS VHSSLTTN
Sbjct: 61  KIKVMDLAAILEGLKMLVPTDHCPVLVELDSIHSSYPPSETSASWITSIVHSSLTTN 117

[Close]

BLAST of CmaCh18G001540 vs. NCBI nr
Match: KAG7012234.1 (hypothetical protein SDJN02_24986, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.6e-55
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 3   QQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVEGPRIVSKVEQKETCSTWKI 62
           +QGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQV+GPRIVSKVEQK TCSTWKI
Sbjct: 91  KQGRQPLQHEAMAKATTTWQRPPTGHWKLNIDASWIAKQVKGPRIVSKVEQKATCSTWKI 150

Query: 63  KVMDLAAILEGLKILVPTDHCPVLVELDSIHSSYPPSEMSASWITSTVHSSLTTN 118
           KVMDLAAILEGLK+LVPTDHCPVLVELDSIHSSYPPSE SASWITS VHSSLTTN
Sbjct: 151 KVMDLAAILEGLKMLVPTDHCPVLVELDSIHSSYPPSETSASWITSIVHSSLTTN 205

The following BLAST results are available for this feature:

BLAST of CmaCh18G001540 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G001540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3J0	5.1e-60	100.00	uncharacterized protein LOC111490320 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GUH7	4.0e-57	95.73	uncharacterized protein LOC111457054 OS=Cucurbita moschata OX=3662 GN=LOC1114570...	[more]

BLAST of CmaCh18G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994678.1	1.1e-59	100.00	uncharacterized protein LOC111490320 isoform X1 [Cucurbita maxima] >XP_022994679...	[more]
XP_022954949.1	8.4e-57	95.73	uncharacterized protein LOC111457054 [Cucurbita moschata]	[more]
KAG6573045.1	4.1e-56	94.87	hypothetical protein SDJN03_26932, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012234.1	4.6e-55	94.78	hypothetical protein SDJN02_24986, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh18G001540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G001540.1	CmaCh18G001540.1	mRNA