CmaCh17G013900 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAGTCCATTAAGAGGGGGTTGGTCCGGTTCGAAATGTGGACGTCTCGTGTTCCGATCCACGCAGCGCTGCTTGCTGTCGTTTGTCGTCGCGCCCTAAACCCTTTAACCCCGAAACCCCATCGTCGTCCAGTGAATTCAAGTCAGAAGAACATGGTGAGACCCAGAGTGGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGTTGTCTATCTTTTCTCAACTCGGTACTTTTTTCACCCTCTTGGGCGCGCATTTGTTAACTCATTTCTTCTCGTCTCCAGGAAACAAGATAGCAGTGATTGAAAACCTGGGTGCCACCGAGGTGAGCCATTTCCACCGCCTTCTATCTCTTGTTTACCTGCCTATGATGTATCCATAACTTGGCCATACCATTTCTCCTCTTGGGTTAGTTTTGTTGTTGTCTGAAATTTGAATTATGTTCTTACCCGCCTGTAAGCTGCATACATCCTTATCGGCTGGTGACGTATTTAAATTCACTTCAGACTTATCAAAGGATTACCCACATCACTTACCTTCCCATATGAGCAGAACACAACTTGGAAGAACTAGAGTTGAGCGTGAATTAACCGGCCCATGGGAGAAGAGGCCATTTGAATCTAGTTTCCAATATCCTTATCAATGCCTAGCTTTACCAAATTGAGCTTAAGAGAAGAAAGGATCCCTTCTTTAATTTTCTATCACTTTGTTTCCTTCTCAAGCCTACATCCCATAGACTCCTTTCTGTGAGTGCTCCTTCAGTTTTTGGAACAGCATTATTTTCAAAAGAAACAGAAGTTGCTAGTACCCAACCAACCATCTTCCAAAAATAATTATTTTCAGTACAAATTTGCTAACGGGCCTTTGGTTTTGATAACTAAAATTACCTTCATGACCATCCATCACCACCGCTAAAACAGCTCAAGTTCACCGTTAGCATATATTGTCCTATTTAGGCTTTCTCTTCAAGGTTTTAAAATGTGTCTACTAGGAAGAGGTTTTCACACTCTTGTAAGGAATGCTTCGTTCCCCTCTCCAACCAATATGGAATCTCATGGCACACCACTCGATGACTGGTTCTGATACCAATTATAACCGTCCAAGTCCACCACTAGCAGATAATGTCTTCTTTGGGCTTTCCCTTCTGAGCTTTCCTTCAAGGTTTTAAAACGTGTTTGTTAGGTAGAGGTTTTACTTTGTTTCTTTCTCCAACTGATATGGGATCTCACAACCACCTCCTACATTTGTGAGCCACCTGATCGGATAAGAAGCATATTTACACTATAAAACTTTTCACCAAGGTCCTCAAGAAAGTACCTAAATGGTCACTGTATCATTGAGGGTTCTTTCTTGTATCTGAGGTATCTCTTGTCCAATCCACCTAAAGAAATAGGGACTCAAGGATGGCAGCCTACTTTCACTTGACTGAGTGACAACCTTAATCCAAGTTTTCTAAATGGAATCCTCATTCTTATGTGTTGAGCTTCTAGGGTTGATTTCTTGTTACTCAGGTGGAATAAAGTTTCGTCTTCTTTTGACAAAGAGTACCCAAGGTCAAGCGGGTTGTCTCGTAAAATTAGTTGACGTGCGTGCAAGCTGGTCTGAACATTCACGGATATAAAAATAAGGACAAAGAATACCCCTAATCTCGTTTTAAAATGGACAAAATACACCAGGAAGGTGGCACCAACAAATATTGGGTTTAAACTTCTTTGACTTGAAAGTGCTATTTCATCTGAAATCATAAGCTTCCCCTTCCTTTGCTGTTTGTTCGAGGACATGTTTTTCCTTTATCTTTTAGGCATATGACGGTGCATTTTGCTTGACCAGGACCAATTTGATGGCATTGATTTGTGTGATAATGAGATTGTGAAGCTGGAAATTGGAAAATATGCATTATCTTAATCGATTGGGACCTATTTGATAATCATTTCAAGATTATGTCTTTGTTGCTGTCAGAGTTGTTGCCAAAATTACACACACACTAGTTGTTACGAGCAACAGAGTTGTGAAGTTGGTAGAGATAGAGGCGTTGGCATCCCTTCCAAAACTACAGTTTCTTAGTTTGTTGGATAACAATATTAGGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCAGTGGGGAGCAAATTATAATTCTATACTTACTGTATGAAGTGAAGTTAGTATTTTATTAACAAATGAACAATACAAATTCAAGAAATTAAATCAAATAATCTATTTCAGGGGCTTCTAAGA TGAAAGTCCATTAAGAGGGGGTTGGTCCGGTTCGAAATGTGGACGTCTCGTGTTCCGATCCACGCAGCGCTGCTTGCTGTCGTTTGTCGTCGCGCCCTAAACCCTTTAACCCCGAAACCCCATCGTCGTCCAGTGAATTCAAGTCAGAAGAACATGGTGAGACCCAGAGTGGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATTGAAAACCTGGGTGCCACCGAGGTGAGCCATTTCCACCGCCTTCTATCTCTTGTTTACCTGCCTATGATGTATCCATAACTTGGCCATACCATTTCTCCTCTTGGGACCAATTTGATGGCATTGATTTGTGTGATAATGAGATTGTGAAGCTGGAAATTGGAAAATATGCATTATCTTAATCGATTGGGACCTATTTGATAATCATTTCAAGATTATGTCTTTGTTGCTGTCAGAGTTGTTGCCAAAATTACACACACACTAGTTGTTACGAGCAACAGAGTTGTGAAGTTGGTAGAGATAGAGGCGTTGGCATCCCTTCCAAAACTACAGTTTCTTAGTTTGTTGGATAACAATATTAGGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCAGTGGGGAGCAAATTATAATTCTATACTTACTGTATGAAGTGAAGTTAGTATTTTATTAACAAATGAACAATACAAATTCAAGAAATTAAATCAAATAATCTATTTCAGGGGCTTCTAAGA ATGTGGACGTCTCGTGTTCCGATCCACGCAGCGCTGCTTGCTGTCGTTTGTCGTCGCGCCCTAAACCCTTTAACCCCGAAACCCCATCGTCGTCCAGTGAATTCAAGTCAGAAGAACATGGTGAGACCCAGAGTGGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTGATTGAAAACCTGGGTGCCACCGAGGTGAGCCATTTCCACCGCCTTCTATCTCTTGTTTACCTGCCTATGATGTATCCATAA MWTSRVPIHAALLAVVCRRALNPLTPKPHRRPVNSSQKNMVRPRVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEVSHFHRLLSLVYLPMMYP Homology
BLAST of CmaCh17G013900 vs. ExPASy Swiss-Prot
Match: P43333 (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2) HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13 Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy Swiss-Prot
Match: P09661 (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 2.9e-05 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy Swiss-Prot
Match: Q4R8Y8 (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 2.9e-05 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy Swiss-Prot
Match: P57784 (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 2.9e-05 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy Swiss-Prot
Match: Q9BLB6 (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 5.5e-04 Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy TrEMBL
Match: A0A6J1JRX0 (U2 small nuclear ribonucleoprotein A'-like OS=Cucurbita maxima OX=3661 GN=LOC111488368 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy TrEMBL
Match: A0A453MJ78 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12 Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy TrEMBL
Match: A0A4D8YGK2 (U2 small nuclear ribonucleoprotein A OS=Salvia splendens OX=180675 GN=SNRPA1 PE=3 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12 Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy TrEMBL
Match: A0A6J1KWC8 (U2 small nuclear ribonucleoprotein A' OS=Cucurbita maxima OX=3661 GN=LOC111498166 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12 Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0
BLAST of CmaCh17G013900 vs. ExPASy TrEMBL
Match: E5GB46 (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12 Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0
BLAST of CmaCh17G013900 vs. NCBI nr
Match: XP_022991841.1 (U2 small nuclear ribonucleoprotein A'-like [Cucurbita maxima]) HSP 1 Score: 166.8 bits (421), Expect = 9.5e-38 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of CmaCh17G013900 vs. NCBI nr
Match: KAG6791427.1 (hypothetical protein POTOM_000546 [Populus tomentosa]) HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12 Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0
BLAST of CmaCh17G013900 vs. NCBI nr
Match: KAF8708798.1 (hypothetical protein HU200_030187 [Digitaria exilis]) HSP 1 Score: 82.8 bits (203), Expect = 1.8e-12 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0
BLAST of CmaCh17G013900 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]) HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12 Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0
BLAST of CmaCh17G013900 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo] >KAG6592834.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. sororia] >KAG7025241.1 U2 small nuclear ribonucleoprotein A', partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12 Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0
BLAST of CmaCh17G013900 vs. TAIR 10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A ) HSP 1 Score: 77.0 bits (188), Expect = 9.2e-15 Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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