CmaCh17G013270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G013270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mediator of RNA polymerase II transcription subunit 19a-like
Location	Cma_Chr17: 8942403 .. 8944406 (-)
RNA-Seq Expression	CmaCh17G013270
Synteny	CmaCh17G013270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGTAAATGTCGATATAGTCAATTTAGTCCCCTTTCTCTCGTGCACTGGCATTTAAAGAGTGAGACATAGCTTGGTATATACATTGATGCTTCTATGTTTAGAAATCTATGGATGTTTTTTTGGATGATACGATATTGTTGTAAATGAACGTGCCTGTTTTGGTGATAACATTCCCTTGGGTCCTCTATTATATACCTAGGAGCTCAATGTTTAATATTTTTTGGTATATAAGGATCTCTATGTATATCTCTTGACCACTTATATTAGAAATTTATTTCTCTGGGTTTACTCTTTTAATTTCTATGACTGTTGTAGTTGAGCTAGAGCATATGATTCTAATACAATTTTTACAAGACATGCAGAGGGCTGTGGGATTTATTGCTTGAAGCAGAGTAAAACCAAGTTTTGGTAGATCTAGAATTGTGGTTGGAAAATTATAGTTCAAGTTTAGAGCTGAATTAGAACACTTGACCCTTTATATGTTTTTTTTATAAAAATATCATTACTGTAGCTCCTTTTGTCTCTTCAGGTTGTACATTTTAATTCTTTAACTGATTTTTTCTAATCATTTACCTTTTTCTTTCTTTTGTTAATATTTTTCTTTATTGCTTATATTTCAATGTAATTGAAAGTAACATGGAAGTACAAGATATAGTGGTTTCCCGTTCCATCTTGTTCGTTTTCTATCTGTATTTATTATCTTGTCACCCGAATTTTCAGTGTATTTTTATTTGTACCTTCAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTGCCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAAACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGTAAGAAATCTTTAACTAAAGTTGTTAAAATGAGCCACTTTCTTCAGCTTTCTTCCATTAGCTGGAATCTAGATTTCACCAAGGCAACGGGTCGATTATCAGCATTTGTCATCCTGATTCTTTTCTCTGCAAGTGATGATCCATCTTTTTTTCTTTGGTTAGGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAGGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGGTTGGAAAACCTTTACTCTTTTCCTGCTCTTTGTAAATACCAAAATTAGATAACAATGGGATGGTTAAGGAGTAGAATGTCATTGGCATTAACGTTATGGACGTTTTCGTATCCCACTCACTGAACTTTCTTCATTTTACCTAAACTATCAAACCCTTAGCATGCCTTGAGGGCGGGGAAGTTAATTGATCTATACCATATTTTCTCTACTAAAAATTAAGGATTAAGTGGTCTTTTTGTTTTTACTACCAAGTGAGCTGTTTCTTAATTTTTAACTTCACTCAATTTTCAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGGTAATATGAGGTCCATTATTTTTCAGCTGTAGATTGCTTGCTTACTGCAAAGAAGGATTACCCAGGCCAACTTATATCTCCTTAATCCATGTTTTGACTTTTCAATTGATTGTTTTCTAACTAAGTCTTCTGCATTTAATTTCTACAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGATGA

mRNA sequence

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTGCCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAAACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAGGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGATGA

Coding sequence (CDS)

ATGGAATCTGAAGATAAGAAGTTTGGCCGAGGACCTAGGGAACTGACTGGTGCTGTGGATCTTATAAGTCACTACAAGCTGTTGCCTCACCATGATTTTTTCTGCAAGAAGTCGCTTCCATTGTCAATTTCGGATACACATTATCTTCATAACGTGGTTGGAGACATAGAAATTAGAAAAGGGGAAGGGATGCAGTTGAATCAACTCATACAGAATACTTCTTATTCTAGAGAAACCAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATCGGAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAGGGTGTTGCTACTATTCCAGGGAAGTCAAGAAGTGAGTCCAAAGATAAAGACAGAAAGCATAAGAAGCACAAGGATAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCATAAGCATCGACATAAAGACCGAAGTAAGGATAAAGACAAGGACAAGAAGAAAGAGAAAAGTGCCCATCAAGATTCTGGCGCTGATCATTCGAAGAAGCATCATGAAAAGAAAAGGAAGCATGATGGAGAAGATGACATTAATGACATTCATAGGCACAAAAAAAGTAAGCATAAGACCTCAAAAATTGAAGAAATGGGAGTGATAAAGGTAGCGGGATGA

Protein sequence

MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRKGEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSRSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG

Homology

[Close]

BLAST of CmaCh17G013270 vs. ExPASy Swiss-Prot
Match: Q9FMP0 (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.2e-81
Identity = 163/223 (73.09%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLI++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP KS+
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KKEKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    KK+K+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of CmaCh17G013270 vs. ExPASy Swiss-Prot
Match: Q6NQD9 (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.7e-67
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKS 120
           GEGMQL+QLI N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 RSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKK 180
           +SESKDKDRKH+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK ++K   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL
Match: A0A6J1JTJ7 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488204 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.7e-113
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR
Sbjct: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL
Match: A0A6J1GP53 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456195 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.7e-113
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR
Sbjct: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL
Match: A0A1S4DWJ4 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 210/219 (95.89%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL
Match: A0A6J1CP39 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.7e-107
Identity = 208/219 (94.98%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLPPAEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDK+RKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKK++KSAH +SGADHSKKH
Sbjct: 121 SESKDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL
Match: A0A0A0K716 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.2e-106
Identity = 208/216 (96.30%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIK 216

[Close]

BLAST of CmaCh17G013270 vs. NCBI nr
Match: XP_022953766.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022953767.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita moschata] >XP_022991654.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima] >XP_022991655.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR
Sbjct: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. NCBI nr
Match: XP_023549111.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549112.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549113.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.8 bits (1065), Expect = 4.5e-112
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR
Sbjct: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS+HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSSHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. NCBI nr
Match: KAG6576042.1 (Ribonuclease 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR
Sbjct: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 217
           HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIK 216

[Close]

BLAST of CmaCh17G013270 vs. NCBI nr
Match: XP_031744806.1 (mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus] >XP_031744807.1 mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 211/219 (96.35%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. NCBI nr
Match: XP_016900359.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 4.3e-107
Identity = 210/219 (95.89%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGD EIRK
Sbjct: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQLNQLIQNTSY RETNARIQPFDQDILI AFQLRETGPVDLP AEKGV TIPGKS+
Sbjct: 61  GEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKKH 180
           SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKK+KS HQDSGADHSKKH
Sbjct: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKH 180

Query: 181 HEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           HEKKRKHDGEDDINDIHRHKKSKHK SKIEEMGVIKVAG
Sbjct: 181 HEKKRKHDGEDDINDIHRHKKSKHKASKIEEMGVIKVAG 219

[Close]

BLAST of CmaCh17G013270 vs. TAIR 10
Match: AT5G12230.1 (MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 301.6 bits (771), Expect = 5.1e-82
Identity = 163/223 (73.09%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           ME E  KFG GPREL GA DLIS +KL+ HH+FFCKKSLP+S+SD+HYLHNVVGD EIRK
Sbjct: 1   MEPERLKFG-GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSYSRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKSR 120
           GEGMQL+QLI++ S SRETN RIQPFD D L  +FQL +  PV+LPPAEKG  TIP KS+
Sbjct: 61  GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSK 120

Query: 121 SESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KKEKSAHQDSGADH 180
           SESKD+DRKHKKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    KK+K+ H DSG DH
Sbjct: 121 SESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DH 180

Query: 181 SKKHHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVIKVAG 220
           SKKHH+KKRKHDG++D+ND+ RHKK+KHK+SK++E+G I+VAG
Sbjct: 181 SKKHHDKKRKHDGDEDLNDVQRHKKNKHKSSKLDEVGAIRVAG 221

[Close]

BLAST of CmaCh17G013270 vs. TAIR 10
Match: AT5G19480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-68
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKS 120
           GEGMQL+QLI N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 RSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKK 180
           +SESKDKDRKH+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK ++K   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

[Close]

BLAST of CmaCh17G013270 vs. TAIR 10
Match: AT5G19480.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 15754 Blast hits to 7644 proteins in 441 species: Archae - 6; Bacteria - 451; Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses - 38; Other Eukaryotes - 4987 (source: NCBI BLink). )

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-68
Identity = 145/216 (67.13%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 1   MESEDKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDIEIRK 60
           MESE  KFG GPREL GA+DLI+ YKLLPHH+FFCK+SLP S+SD HYLHN+VGD EIRK
Sbjct: 1   MESESVKFG-GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 60

Query: 61  GEGMQLNQLIQNTSY-SRETNARIQPFDQDILIGAFQLRETGPVDLPPAEKGVATIPGKS 120
           GEGMQL+QLI N S  SR+TNARIQPF  D L  AF+L +T PV+LPPAEKG  T   KS
Sbjct: 61  GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKS 120

Query: 121 RSESKDKDRKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKEKSAHQDSGADHSKK 180
           +SESKDKDRKH+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK ++K   +         
Sbjct: 121 KSESKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG------- 180

Query: 181 HHEKKRKHDGEDDINDIHRHKKSKHKTSKIEEMGVI 216
           HH+KKRK++G +D +D+ RHKKSKHK+SK++EMG +
Sbjct: 181 HHDKKRKNNGTEDADDVQRHKKSKHKSSKLDEMGAM 207

The following BLAST results are available for this feature:

BLAST of CmaCh17G013270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP0	7.2e-81	73.09	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
Q6NQD9	2.7e-67	67.13	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of CmaCh17G013270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTJ7	9.7e-113	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Cucur...	[more]
A0A6J1GP53	9.7e-113	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Cucur...	[more]
A0A1S4DWJ4	2.1e-107	95.89	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=...	[more]
A0A6J1CP39	4.7e-107	94.98	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momor...	[more]
A0A0A0K716	5.2e-106	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374560 PE=4 SV=1	[more]

BLAST of CmaCh17G013270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953766.1	2.0e-112	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbi...	[more]
XP_023549111.1	4.5e-112	99.54	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Cucurbi...	[more]
KAG6576042.1	1.1e-110	100.00	Ribonuclease 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031744806.1	1.9e-107	96.35	mediator of RNA polymerase II transcription subunit 19a [Cucumis sativus] >XP_03...	[more]
XP_016900359.1	4.3e-107	95.89	PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Cucumis...	[more]

BLAST of CmaCh17G013270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12230.1	5.1e-82	73.09	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19...	[more]
AT5G19480.1	1.9e-68	67.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G19480.2	1.9e-68	67.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019403	Mediator complex, subunit Med19, metazoa	PFAM	PF10278	Med19	coord: 12..176 e-value: 4.0E-7 score: 30.1
IPR019403	Mediator complex, subunit Med19, metazoa	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 1..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..219
None	No IPR available	PANTHER	PTHR22536:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 19A-LIKE ISOFORM X1	coord: 1..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G013270.1	CmaCh17G013270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006777	Mo-molybdopterin cofactor biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0019008	molybdopterin synthase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0061798	GTP 3',8'-cyclase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003712	transcription coregulator activity