CmaCh17G011010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G011010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	translocator protein homolog
Location	Cma_Chr17: 7752846 .. 7753412 (-)
RNA-Seq Expression	CmaCh17G011010
Synteny	CmaCh17G011010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

mRNA sequence

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

Coding sequence (CDS)

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

Protein sequence

MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIVSLTMVSV

Homology

[Close]

BLAST of CmaCh17G011010 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR + +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  KPNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

[Close]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL
Match: A0A6J1JZC9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 4.9e-97
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL
Match: A0A6J1GQH6 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 181/188 (96.28%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           ++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYTLYL
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL
Match: A0A0A0KAU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 132/191 (69.11%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MASTELKHRTTGDS--PAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS   +  +A D   TK++KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           L S  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNALYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LT+VS+
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL
Match: A0A5A7VJL5 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00470 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.5e-65
Identity = 132/191 (69.11%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVS--TKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS        +V+  TK+A+NK IAKRGL+SLA+A+SIP+++TLL I 
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           L S  KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF ++PNALYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LYLVL +AWY LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LTM S+
Sbjct: 181 LTVVNLTMASL 191

[Close]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL
Match: A0A6J1DBR2 (translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.0e-54
Identity = 118/190 (62.11%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRA---KNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAS +LKHR        P  +D+ +T  A   K  A A+RGLKSLAVAVS+P++++LL++
Sbjct: 1   MASPDLKHRK-------PTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAV 60

Query: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
            LLS P  + PS+ KPFW PSA  VN GS ASSLLMG + WL WA+GGF + PNALYLYT
Sbjct: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LY++LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVF
Sbjct: 121 LYVLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180

Query: 181 LTIVSLTMVS 188
           LT+V+LTMV+
Sbjct: 181 LTVVNLTMVA 183

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 352.1 bits (902), Expect = 3.1e-93
Identity = 181/188 (96.28%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPAVPAAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           ++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYTLYL
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.5 bits (898), Expect = 8.9e-93
Identity = 182/188 (96.81%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MASTELKHRTTGDSPA P AADE S KRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL
Sbjct: 1   MASTELKHRTTGDSPAAP-AADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           S+PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNA+YLYTLYL
Sbjct: 61  SRPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYTLYL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VSLTMVSV 189
           VSLTMVSV
Sbjct: 181 VSLTMVSV 187

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: KAG6575839.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-91
Identity = 180/191 (94.24%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVP---AAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           LLL++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPCLVWSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTIVSLTMVSV 189
           LTIVSLTMV+V
Sbjct: 181 LTIVSLTMVAV 191

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: KAG7014374.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 166/181 (91.71%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVP---AAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           LLL++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 179
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180

[Close]

BLAST of CmaCh17G011010 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-31
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR + +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  KPNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

The following BLAST results are available for this feature:

BLAST of CmaCh17G011010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	1.1e-29	38.34	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of CmaCh17G011010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZC9	4.9e-97	100.00	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV...	[more]
A0A6J1GQH6	1.5e-93	96.28	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 ...	[more]
A0A0A0KAU9	2.2e-65	69.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1	[more]
A0A5A7VJL5	8.5e-65	69.11	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1DBR2	1.0e-54	62.11	translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3...	[more]

BLAST of CmaCh17G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992488.1	1.0e-96	100.00	translocator protein homolog [Cucurbita maxima]	[more]
XP_022953735.1	3.1e-93	96.28	translocator protein homolog [Cucurbita moschata]	[more]
XP_023548365.1	8.9e-93	96.81	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
KAG6575839.1	2.2e-91	94.24	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014374.1	2.2e-83	91.71	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh17G011010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	7.9e-31	38.34	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 31..188 e-value: 1.2E-28 score: 97.6
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 44..186 e-value: 2.3E-18 score: 66.5
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 22..186
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 42..186 e-value: 2.48678E-16 score: 70.2184
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 37..187 e-value: 2.8E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 22..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011010.1	CmaCh17G011010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane