CmaCh17G010430 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G010430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranscription initiation factor TFIID subunit 13
LocationCma_Chr17: 7533163 .. 7536273 (+)
RNA-Seq ExpressionCmaCh17G010430
SyntenyCmaCh17G010430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTAGCTTTTTATTTTTATTTTTAATGCCCCAGCTTTTTGGAATTTCCCAATTGAACACCTTTGGCGGCAGAATAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGAATTCTCCATCTCCGGTGAGAATCGTGACCCAATCTCTGCAGATCCTAATACTTCTCTTTCTTTTCATCTTTATCGGCGTATATTTTATCGACAAGTAAATTTACACCACTCTTCCGAGGCGCTCCACTTTGAAATTCCCCTTTCTTTTTCGAATGTTTGCTTGATAGTGTAACTTTTCATTAGGGTTTATCTTCTTTCCCTCGAGTTCGGGATTTTGTTCCCTTTAACGTTTTCGGCTATAATTCCGTATAGTCGGAATTTTCTTATAGGAATGTTTCGATTTAGTGGCTCGATGGTTATAGATGTTTGATATTGTTTAATTTGATGATTTTATCTTCGCGTTTAGGTAATTTTTCGCCTTGATTATTGTGGGAAGATCGTGAAGATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTTTCAAAAAGAATGTAACTAGTTTTCCTTTTCTTCCTCTTTGATTTTTCAGCGCAAATTTGTATGTGAAAATGTAATTATGTGTCCTCTGTTCTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATGTAAGTGAAAGTTATCATATATTCATTCTGTTCTAACTTATAAAGAAAGGAGGATTATGTTTGTTTCCATGGAAATTCAAACCTGAAATTTTCTTTTTGTACTTTTTGTGGTTTTTTCTGCTTCTCACCTTCCATGGCTGTATATCTTTCGTTGAAATCTTATGTAGACCTTAGAAAGTGAGTAAATTCTAGTAGATAAAACTTTGATTGTTTAGCTGTAACAGTCCAAGTCCACCGCTAGCCGATATTGTCCTCTTTGGATTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTAAAACGCATTTGCTAGGGAGAGGTTTGCACACTCTTATAAAGAATGTTTCGTTCTCCTCCCCAACCAATATGGGATCTCACAATCCACCCCCCCTTTAGGCTCAGTGTCCTCGCTGACACTCGTTCCTTTCTCCAATCGATGTGGGGTCTCACGATCCACCCCCTTCGAGGCCCAACGTCCTTGCTAGCACACTGCCCGGTGTCTGGTTTTGATACCATTTGTAATAGTCCAACCCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGAGCTTCCACTCAATGTTTTAAAACGTGTCTGCTATGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCGACGTGGGATCTCACAATCCCCCAACATCCTCGCTGGCACTTGTTCCTCTCTCCAATCGACTTAGGATCTCACATTAGCTCTTCTTGGGAGTCTAGGATAGTTGGACGACGATTCTTTGGAGATATTTTCATCATAAGAACATACATCTCCATGATGCCTGATATGTAAATTTTTAATGCAAGTTGCTATCCCATCCCCCCAGAAAGATGCATACCTGCCTGAAGAGAATTGGAAAGAACTAATCAATATTCCATGTATTTTCCAAAATTTCTAAAGCTTTCAATACCTGAATGACAATAGAGAAATCAGATAACAAGCAAGCCAAAAGAGCTGAACTATGATTTCGAAATCCTGAAGCTTTATAATGGCTGTGTTACGGTTCTTAATATTTATTAAGAGCTGGATCAGAAGTACAATGAGAGCAAGGAAAAATTCTTGTCTTTGTGTCCTTATCATACTTCATTTATAAGTAAAATAGCTACTCATGAGTTTTTGTATGCATTACAGCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAAGAGTTTTTGTGCAATAATTAAGTATTCCTTGCTAAACCGACGTGGTAGAGTAAGGATAATCTGAATTTTATGTTCTTTTCAGGTGTATAAAGCCCAGGAAATTGGATCCAAAAGGGGAAAACTATCTGTGGAAGACTTCTTGTATCTAATGCGCAAGGTACGTTACATTTTCTGTATGTTTACATATCAATGAATGAACTTTTCTCTCGTCATTTGGCTATGCAACATGGCATCCTTTATGTAAAGACATTGACTTATTAAAATTTTCAAGTGGGGGCTGCTGTTCTGCTGTTAGTCATTATTTCGACTCTTTTCCGTGCATTCTGTAAGCATACGTTTCTTGTGTACCAGCTTCTGTTATAGATCATAGATCATTCCATGTGCGATTTCTGGGGTTTGCTGATTACGTAAAGAGATTAGCTACATTGTTTTGATCTAAAATTAGATGCTGGCAAATGGTCAACACTCCATATCGTTCCCTATTGGGTTACATTAATCTCTGAGTTTGTCACTACCAAAGGGACGGTTTCTTAGAACATGGAGTGTGAATCGAACCTACGTTTGAATTGAAAGTTAAGGATAGAAAGTTGATTGTGAAGAAAGCTCATATCCATGCTTTCCTTTCTGTGGAGGCAATATTTATGAAATATTCCTAGTGTCACTGTTACTCTTGAAATTGTGGCTTCATGGCCTTTTTTCTTTTGTTTTTGGAAAGCTCAAACGCTCTTGGCTGCAGCCGTTTGAACTTAGGATTTGATGCCAAAACTTCTTGTTAACCCTTATGATTTTGTATGAACGCTTTAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAGAGTTTACAACAGAAACCAAAGTAATGATCGGAAGATATTTGGGGTCATCTGTTGCTGCACGGACAAAGTTCATCTCAATATGGTGAACCGACAGGCATTTGAAGCAACCCCAAAGGGTCCATGGTAGACAGGGTAAAGCAAAGCAATTAGCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCT

mRNA sequence

AAAAAACTAGCTTTTTATTTTTATTTTTAATGCCCCAGCTTTTTGGAATTTCCCAATTGAACACCTTTGGCGGCAGAATAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGAATTCTCCATCTCCGGTAATTTTTCGCCTTGATTATTGTGGGAAGATCGTGAAGATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCCAAAAGGGGAAAACTATCTGTGGAAGACTTCTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAGAGTTTACAACAGAAACCAAAGTAATGATCGGAAGATATTTGGGGTCATCTGTTGCTGCACGGACAAAGTTCATCTCAATATGGTGAACCGACAGGCATTTGAAGCAACCCCAAAGGGTCCATGGTAGACAGGGTAAAGCAAAGCAATTAGCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCT

Coding sequence (CDS)

ATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCCAAAAGGGGAAAACTATCTGTGGAAGACTTCTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAG

Protein sequence

MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Homology
[Close]
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-37
Identity = 82/126 (65.08%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 2   NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMED 61
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 62  IVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 121
           IVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF+
Sbjct: 63  IVVEYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFD 122

Query: 122 IDEDKL 125
           +DE +L
Sbjct: 123 VDEKEL 124

[Close]
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match: A0A6J1JWI2 (transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111488122 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match: A0A6J1GN10 (transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111455994 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.8e-63
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVD 136
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.3e-62
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVD 136
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CmaCh17G010430 vs. NCBI nr
Match: XP_022991537.1 (transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_022991538.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >KAG6575785.1 Transcription initiation factor TFIID subunit 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014326.1 Transcription initiation factor TFIID subunit 13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.9 bits (655), Expect = 9.7e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]
BLAST of CmaCh17G010430 vs. NCBI nr
Match: XP_023547584.1 (transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >XP_023547585.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]
BLAST of CmaCh17G010430 vs. NCBI nr
Match: XP_022953440.1 (transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953441.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 2.8e-64
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]
BLAST of CmaCh17G010430 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKMDQ 136

[Close]
BLAST of CmaCh17G010430 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 137
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]
BLAST of CmaCh17G010430 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 154.5 bits (389), Expect = 6.3e-38
Identity = 82/126 (65.08%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 2   NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMED 61
           N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+ED
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVED 62

Query: 62  IVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 121
           IVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF+
Sbjct: 63  IVVEYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFD 122

Query: 122 IDEDKL 125
           +DE +L
Sbjct: 123 VDEKEL 124

The following BLAST results are available for this feature:
BLAST of CmaCh17G010430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQH48.9e-3765.08Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702... [more]
Q148M73.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ... [more]
Q155433.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1... [more]
P612163.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf... [more]
Q5R9W63.9e-2459.57Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1... [more]
BLAST of CmaCh17G010430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JWI24.7e-65100.00transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GN101.4e-6499.26transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1CTQ09.8e-6396.32transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ... [more]
A0A1S3BRL08.3e-6296.30transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5A7TZC28.3e-6296.30Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
BLAST of CmaCh17G010430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991537.19.7e-65100.00transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_02299153... [more]
XP_023547584.12.2e-6499.26transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >X... [more]
XP_022953440.12.8e-6499.26transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953... [more]
XP_038899215.11.5e-6296.32transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03... [more]
XP_022144527.12.0e-6296.32transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214... [more]
BLAST of CmaCh17G010430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02680.16.3e-3865.08TBP-associated factor 13 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 30..118
e-value: 4.8E-31
score: 106.6
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 1..133
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 28..118
e-value: 1.05853E-41
score: 131.499
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 30..74
e-value: 7.3E-22
score: 78.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 31..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G010430.1CmaCh17G010430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009960 endosperm development
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0006413 translational initiation
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity