CmaCh17G008980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G008980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Cma_Chr17: 6800285 .. 6804845 (+)
RNA-Seq Expression	CmaCh17G008980
Synteny	CmaCh17G008980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATGCAAATATTCGAGAAGAGAGAGGACCCGCGCGAAAATAGCGGAGTGGCATCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTGTCTTTTCCCCGGCGACTGAACTTCCACTGAGAACTTCAGAGAGCTTAGCCATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCATTTCACAGCAACTTTCTCTTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCCAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCGTAATCTTTCTTTTTCTCTATGAATATGGACGATCTTACTTCTCAATCCTATTAGGTTCTTTCTTTTGAGAAATACTGCTCATTCCCGCAATTTGTTACTTAGCAAGTTAGCATTAGAGTTACTACTACCATGCTATACGTTTGTTTCGTTTTGATCCCCCTGCCTCGAGTATCGTAATCGGTTGTGCGTTTGTTAGGATCATCTGGTGAGTTTTATTTCGGAGCTTTCTTCTTACAGATGACTCAATTTAAAATTTGAAAATTGAGACTCTAACCGCAGTCCGTTTAAGCAAATTATTTCTGAATGTCTTTGCAACTTACGAGAATTAACAATATCCTATTATTTCTGAATGCTTTATTGTCCGAATATTGTTCATTCTAGAATTTATAAGTTGTTCTTCTGAGTATAATTCTCATTATTTTCTAACCCTCGTTTTGTTTTGTTTTTTGTTTTTACCATTTTGGTGGGATTTCCTATATTCAGACCCCTGCCTAGCAACATTTCCTCGTATAAGGTATCTTTCTCCAATTTGTTCTTGATGGAATCTGCTGCTCAGAACATTATGTTTTCTCATTTATTAAAATATTCCCCATATAGGCCGTTTGTTTTCTCTTCTATTCTGGTTTTGCACCTCAATGTGTTATATGCAGATGTTCATATGAATATTCTGGTTCGTTGACATGACATTTTTTCCCCTTTTTTCTTGAGGATATTTCCAAACATGTAAAGGGGTCCTTGGATGATTTCATTGATGCAAATAATCAACTTGCAATGAACCTCAAAGAAAAGAGGGGAAAGTAGACCTGCTTACATTTAGTAGTTCATCGTGAATCTTCATTCAATGTCCCTTGCAGCTCATATTAACTCTTGATTATGAATGTACTCAGTCAACATAGGGTCGTTTTATAATTTAACTCGGTTACATTTGTATATTTTTCTTGTATGAACAAGCCGTGAATATAGAATATAGTATTCCTTGCAATGAAACCAGTTGAAAAGTGTGAATAGTAAATTACATGGGTTATATTCAGAATTATGTTAGTTTAGGTTCTTTTCAATATTCTGGTTTGTTGATAGCACATGTTCATTTGATTTGAGAAAACTTTTAAATATGTCAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTAAGCAACTATATATACTCACATATATATTGCAAACCTCTTCTGAAGTTAGTGCAGCTGTTAAGTACTCGTGTTGTAACTTTAGGTATTTCCAGATAAGCCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGGTAACAAGTTAACTCTTTAAAGAAAAAAATTCTTTTGTCCGATGTAGATCGTACCTGCTTGACATTTTTTTGCCTTGTTGGTAAGAAGTAAATATTTTGTTTACAATAGAAATGCAGAGCTAACCGAGAGCATGCTTGTCCACACAATATAAATCCTGGTCTCCGTTTTATGTGCTTTTTTCATTTGTTTTTCCCTTTTATCTCTCAGATTGATGGAATAACCATAAGTTCCCTAGATGATATTCCTGCTGGACCTGTCACATCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTTGGTTATATACGCATGGATCTCAGAGGATGTTTCACATTCTTGTCCTCTTTTTATTCTGTGCACGTCATGGCCATGTATTTCGCTATTAAATGCATTTTGCAAGTATATGACCCTAGTCATTGAGGCCAGGCTGCAACTTACACTCATAGACTGTAATAGCCTTGATTTAGAAAAGGTAAATGGCAGGAAAAAAAAAAAGAAAATAGAAAAGAGAAAATAGAAAAGAAAAGAAAAGAAATACCATATGAAAAGTGATTGAACTTAATTCTCATGTGAGAAAGCTATTTATAACCTTAAAAACTGCCTCTTCCTATTCATTCCCTTCACTTTTGTGGATATAAACATTTTTCTTCTTCAGGGCCATACTATGTTATATTTACAATCATTTATCTTTTTATCTGCTTCCTTCCAGGACCAAACATTCTCATTTAATGATTACTCAATCTTCACAATCCATCTGAATTGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGTATGATGTCTATGCTAATTGCAAGATAGCAATTTACTTGGTTGAACAAATGGCATATCTTGATTAACTTCTGATTTGAAGTTATCATGATTTCTTCTCGAGTTAGTTCAATTATGCTAATTTCTGTTTTTTTTTTCAATACAAATTATAAAAAATTTCTTAAAAAGTATCCCTCCCATTGATTATGATTCAGCTGTCTACTGAATACTAATATTTTAGAGGACGTGTATGCTCTTGTTTATTTGGTATTACCATTGTAGAACTGCTATCATGCCATCTTTGATGGTGGATTCGATGGTTATATAATACTTCTTCCATATTGAGGATATGAAAGTACTGAATAAGACCTGTTTATGACATTCTAAGTGACATTTTTACACACTAAGTTATTTTTTTAGTTAACTTCATTTGGCTTGGTCTAATTAGTTTTTGCCTGTACACCCGGCGACTCATTTTGGAATTTGCAGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTTCTCCTCCTCATCCATCTTCGATAGATATTGGGTTCATATGCAACTAGTGATCATAAGTTTGAAAACTTACAGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGGGAGTATTCTAAGGTCTTGGATCTTATCTTGAAACCCTTTTAATTTTATATTATTATTATTATTATTTTGTGACTAAATTCTCTACTCTTGGTTCTCTTTGGGGGTATCAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGTGCGTATACTGTTTCATTGAACATCCCGTTGGATAATTTTATTTTTGGGTTCTCTTGATATTTTTATCAGTCCAAATTGGTTACCAACCTCTAAGTTTCGCTTGCTAAGCTTATAGATTCATCTGCTTTTACATCAATATTTTGTCATTGAAATAGGTCATGTGATCTTTATATCCACATCTATTCATCCTTCATAATACTTTCAGGACCTTGGCAAGTGATGTTAAAACAAACAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAGTATGTAACATTGAAGTACTTTTAGCACTTAATCCTTTGTCTGGTGTTTCTGGACTAACTGTTGCTTGTAATTTAGACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGTTTCCTCTTCCTTCTGTGTTATCTCTTGTTTGCTCCACCAATTTACCAGCAGTTTGAAGAGAAATCCGTGTTTGCACTTTTTAGGAAATGATTTTATGAAGAACTTAAAATTTTAGGTCGAGTTGAACTAAGCTCATGTCGACACATCTAATTATATTAGATAAAGTGTGGGAGAGAGATAGGATGTGTAACTCATGAAATCATAGTCTACTTTTGCAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGAGCAGCTCGAGCGTCGATTATTCCTCAGAGACAATATTGATGATCTCGAACATGGAGATGTTAGGATGACCCTATTTCTAAAAGACTCTCATGGCTTTAGAAGACTCCCACAAACTTGAATCAAGCTCATTCACCTCTAAAATTCAAGGTAAAGTAATCTTGTACATTTTATTAATCATGATGAATTAAATTAGACCTCTTACATGGTTTGATATTGTCAAGAATGGTTCATTTTTTTG

mRNA sequence

TAAAATGCAAATATTCGAGAAGAGAGAGGACCCGCGCGAAAATAGCGGAGTGGCATCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTGTCTTTTCCCCGGCGACTGAACTTCCACTGAGAACTTCAGAGAGCTTAGCCATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCATTTCACAGCAACTTTCTCTTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCCAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAGCCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGATTGATGGAATAACCATAAGTTCCCTAGATGATATTCCTGCTGGACCTGTCACATCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGGGAGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGTTAAAACAAACAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGAGCAGCTCGAGCGTCGATTATTCCTCAGAGACAATATTGATGATCTCGAACATGGAGATGTTAGGATGACCCTATTTCTAAAAGACTCTCATGGCTTTAGAAGACTCCCACAAACTTGAATCAAGCTCATTCACCTCTAAAATTCAAGGTAAAGTAATCTTGTACATTTTATTAATCATGATGAATTAAATTAGACCTCTTACATGGTTTGATATTGTCAAGAATGGTTCATTTTTTTG

Coding sequence (CDS)

ATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCATTTCACAGCAACTTTCTCTTCTCTCCTATTTCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCGACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCCAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAGCCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGATTGATGGAATAACCATAAGTTCCCTAGATGATATTCCTGCTGGACCTGTCACATCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGGGAGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGTTAAAACAAACAGATAATTCTTATGCTTGCGTCGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGGGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCGGCATGGCGTAGTTGA

Protein sequence

MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

Homology

[Close]

BLAST of CmaCh17G008980 vs. ExPASy Swiss-Prot
Match: Q8H0W0 (Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 7.7e-150
Identity = 260/353 (73.65%), Postives = 300/353 (84.99%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPDKGRASQLFKTALDSIDGITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWT 222
           PDKP+K RASQ FK A DS+DGI+I SLDDIP   VT+FFRSIR+TLDFDFEDEN G W 
Sbjct: 130 PDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWE 189

Query: 223 SSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHY 282
             EPP+LYIFINCSTREL+ IEK+VETFASS P L+FNLEL+TLRADLGLLGFPPKDLHY
Sbjct: 190 PKEPPTLYIFINCSTRELSFIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHY 249

Query: 283 RFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESE 342
           RFLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQTD S+ACVAES 
Sbjct: 250 RFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESP 309

Query: 343 TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Sbjct: 310 TRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL
Match: A0A6J1JTN7 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488800 PE=4 SV=1)

HSP 1 Score: 781.2 bits (2016), Expect = 2.1e-222
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL
Match: A0A6J1GQW6 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456648 PE=4 SV=1)

HSP 1 Score: 777.7 bits (2007), Expect = 2.3e-221
Identity = 388/391 (99.23%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPFHSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDD+PAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL
Match: A0A5A7UU42 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001640 PE=4 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 2.9e-208
Identity = 365/391 (93.35%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAFLSSPP+IPSL RPFHSNFLFSPISSS   LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFLSSPPYIPSLSRPFHSNFLFSPISSS---LRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           IT+SSLDD+PAGPVTSFFRS+RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL
Match: A0A1S3CFB8 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499841 PE=4 SV=1)

HSP 1 Score: 730.3 bits (1884), Expect = 4.2e-207
Identity = 363/391 (92.84%), Postives = 378/391 (96.68%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           M IMAF+SSPP+IPSL RPF SNFLFSPISSS   LRRST SSLFGAQTLA SGFCFRIH
Sbjct: 1   MPIMAFISSPPYIPSLSRPFQSNFLFSPISSS---LRRSTPSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           IT+SSLDD+PAGPVTSFFRS+RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL
Match: A0A0A0KA03 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=4 SV=1)

HSP 1 Score: 725.3 bits (1871), Expect = 1.3e-205
Identity = 362/391 (92.58%), Postives = 375/391 (95.91%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSL  PFH+NFLFSPISSS   LRRSTRSSLFGAQTLA SGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLSPPFHTNFLFSPISSS---LRRSTRSSLFGAQTLAASGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           C DKERAAPVT+ SDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CLDKERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSD+FIDANIQLALAVARNLQEKRG RSCIVFPDKP+K RASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           IT+SSLDD+PAG VTSFFRS+RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IE
Sbjct: 181 ITVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIP L+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Sbjct: 241 KYVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           +APYIVNYSGALFRQY GPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 VAPYIVNYSGALFRQYAGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEED DSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of CmaCh17G008980 vs. NCBI nr
Match: XP_022992481.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 781.2 bits (2016), Expect = 4.2e-222
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. NCBI nr
Match: XP_022954402.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 777.7 bits (2007), Expect = 4.7e-221
Identity = 388/391 (99.23%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPFHSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDD+PAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. NCBI nr
Match: KAG6575630.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 775.8 bits (2002), Expect = 1.8e-220
Identity = 388/391 (99.23%), Postives = 389/391 (99.49%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP HSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDD+PAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. NCBI nr
Match: XP_023547388.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 775.0 bits (2000), Expect = 3.0e-220
Identity = 386/391 (98.72%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180
           ISSYKGSSDEFIDANIQL+LAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG
Sbjct: 121 ISSYKGSSDEFIDANIQLSLAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDG 180

Query: 181 ITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240
           ITISSLDD+PAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE
Sbjct: 181 ITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIE 240

Query: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300
           KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Sbjct: 241 KYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP 300

Query: 301 IAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQ 360
           IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETK+ELLRVLGLQEEQ
Sbjct: 301 IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKEELLRVLGLQEEQ 360

Query: 361 GSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           GSSLEFLRRGYKA+TWWEEDNDSEVSSAWRS
Sbjct: 361 GSSLEFLRRGYKASTWWEEDNDSEVSSAWRS 391

[Close]

BLAST of CmaCh17G008980 vs. NCBI nr
Match: KAG7014184.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 742.7 bits (1916), Expect = 1.7e-210
Identity = 387/450 (86.00%), Postives = 388/450 (86.22%), Query Frame = 0


Query: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60
           MAIMAFLSSPPHIPSLVRP H NFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHRNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIH 60

Query: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120
           CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN
Sbjct: 61  CSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSN 120

Query: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS--- 180
           ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS   
Sbjct: 121 ISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSKCG 180

Query: 181 ------------------------------IDGITISSLDDIPAGPVTSFFRSIRNTLDF 240
                                         IDGITISSLDD+PAGPVTSFFRSIRNTLDF
Sbjct: 181 ANRGHACPHNINPGLRFMCFFHLFLPFISQIDGITISSLDDVPAGPVTSFFRSIRNTLDF 240

Query: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------ 300
           DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Sbjct: 241 DFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVNCYHAIFDGGFDVFACTPGDSFWD 300

Query: 301 --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360
             ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI
Sbjct: 301 LQETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 360

Query: 361 APYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 392
           APYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 361 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 420

[Close]

BLAST of CmaCh17G008980 vs. TAIR 10
Match: AT1G73060.1 (Low PSII Accumulation 3 )

HSP 1 Score: 531.6 bits (1368), Expect = 5.5e-151
Identity = 260/353 (73.65%), Postives = 300/353 (84.99%), Query Frame = 0


Query: 43  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANS 102
           +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANS
Sbjct: 10  ALFSSPSILTS----RIRCGATANSGGAISSTSSNSDPRRGVPLYKPKSYEVLATDAANS 69

Query: 103 LAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVF 162
           LA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQLA+ V R LQEK  TR+CIVF
Sbjct: 70  LAFALQDSKSRLEIDFPPLPSSISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVF 129

Query: 163 PDKPDKGRASQLFKTALDSIDGITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWT 222
           PDKP+K RASQ FK A DS+DGI+I SLDDIP   VT+FFRSIR+TLDFDFEDEN G W 
Sbjct: 130 PDKPEKRRASQRFKAAFDSVDGISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGTWE 189

Query: 223 SSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHY 282
             EPP+LYIFINCSTREL+ IEK+VETFASS P L+FNLEL+TLRADLGLLGFPPKDLHY
Sbjct: 190 PKEPPTLYIFINCSTRELSFIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHY 249

Query: 283 RFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESE 342
           RFLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQTD S+ACVAES 
Sbjct: 250 RFLSQFIPVFYIRTREYSKTVAVAPFVLNYNGALFRQYPGPWQVMLKQTDGSFACVAESP 309

Query: 343 TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS 392
           TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Sbjct: 310 TRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of CmaCh17G008980 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 89/349 (25.50%), Postives = 148/349 (42.41%), Query Frame = 0


Query: 29  ISSSFSALRRSTRSSLFGAQTLATSGFCFRIHCSD----------KERAAPVTRSSDPKA 88
           +S SFS     + +SL G     +      +H  +          K RA  V+   +   
Sbjct: 1   MSPSFSIATTVSPASLAGTLASNSKNVLCSLHSKNNDITKTNRNLKFRACSVSGGYNNNT 60

Query: 89  GVP-IYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSD---EFIDA 148
            V  +  P+ Y  L++ A  ++  AL+D K  +EI+FP   S ++S  G  +   E  ++
Sbjct: 61  SVDNVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFP--TSGLASVPGDGEGATEMTES 120

Query: 149 NIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDIPAGPV 208
              +     R L  ++   + I FP+  +        K A  ++ G T   LD +     
Sbjct: 121 INMIREFCDRLLAPEKARSTRIFFPEANE-------VKFAQKTVFGGTYFKLDYLTK--- 180

Query: 209 TSFFRSIRNTLDFDFED--ENAGRWTSSEPPSLYIFINCSTRELAMIEK-YVETFASSIP 268
            S F       DF F +  + A R    +   L  +   +  E+ ++E+ Y E   ++  
Sbjct: 181 PSLFE------DFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDR 240

Query: 269 TL-MFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKT----VPIAPYIV 328
            L +FN EL+ +R+     G+ PK             FY ++   +KT    +    YI 
Sbjct: 241 KLIIFNGELDRIRS-----GYYPK------------FFYPKLAALTKTLLPKMETVYYIH 300

Query: 329 NY----SGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELL 352
           N+     G LFR YPGPWQV L++T N Y CV + E+  +L E   ++L
Sbjct: 301 NFKGQKGGVLFRCYPGPWQV-LRRTRNKYICVHQQESMPSLKEVALDIL 313

The following BLAST results are available for this feature:

BLAST of CmaCh17G008980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0W0	7.7e-150	73.65	Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1	[more]

BLAST of CmaCh17G008980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTN7	2.1e-222	100.00	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GQW6	2.3e-221	99.23	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7UU42	2.9e-208	93.35	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFB8	4.2e-207	92.84	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KA03	1.3e-205	92.58	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=...	[more]

BLAST of CmaCh17G008980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992481.1	4.2e-222	100.00	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
XP_022954402.1	4.7e-221	99.23	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
KAG6575630.1	1.8e-220	99.23	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_023547388.1	3.0e-220	98.72	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7014184.1	1.7e-210	86.00	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of CmaCh17G008980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73060.1	5.5e-151	73.65	Low PSII Accumulation 3	[more]
AT5G48790.1	1.4e-10	25.50	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 85..347 e-value: 4.7E-50 score: 170.4
None	No IPR available	PANTHER	PTHR34051:SF2	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 48..391
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 48..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G008980.1	CmaCh17G008980.1	mRNA