CmaCh17G007230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G007230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 5932024 .. 5932833 (+)
RNA-Seq Expression	CmaCh17G007230
Synteny	CmaCh17G007230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGTATTTTTATTTACAAAAATACAATAACCATTATTAATCAATTAAAAAAAAGAAATTAAAAGTCAAAAATTGAAATTAACAAACAAATAAGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAGAAAAGAAAAAAATTAATATAAAAACAAGAAACTTAAAATTCCCTCTTTTCACCATCGTCTCAAAATTCAAACAATCCATTTCCAGATTTTCACTCTGAAGTCCACCTTACACTCTGCATTATCCACCGCCGCAGGAACCGCCGTCTTCTTCTTCGCCGTCGGAACGCCCGCCGTAATTCCGTCGCAAAGAATTTTAAGTCCAACCTTCGGCATTTTCAACCATCCCATTTTCACCTTCACTTTCGTCTCCACCTTAATCTCCAACGGCAATCCGGCTTTGCTCTTAATCGCAGCCTTCAACGAATCGACTGGCTCGCCTTCGATCTCTCCGCCACCACTTATCGCTGTCACCTTCATCGCCGTGATGTTTCTCTTCTCGTGCACGAACTCAGGGAACGATCCGTCGCCGAGATCGATGCCGTTCGACGAGATGGCGACGGAAATTGGACTGTAAATGAACTTGACTTTCTTGTTAGGGTTTGTAGCGGCGAGATTTAGGTCGAATTTGGAATTGAGTTGAGAATTAGGCGTAAATTTGAAGGAATCGATTTTGAGAGCCGTAACAGAGAAGGACGGGCGGTGTGGACGGTAAATTAGGTATACGACGGTGGAGGCAACGGCGATGAGGACGATTACGGTGACGATGATCGCTGTCAACCAGACGCAGATTGA

mRNA sequence

ATGTTGAAGAACCGCCGTCTTCTTCTTCGCCGTCGGAACGCCCGCCGTAATTCCGTCGCAAAGAATTTTAAGTCCAACCTTCGGCATTTTCAACCATCCCATTTTCACCTTCACTTTCGTCTCCACCTTAATCTCCAACGGCAATCCGGCTTTGCTCTTAATCGCAGCCTTCAACGAATCGACTGGCTCGCCTTCGATCTCTCCGCCACCACTTATCGCTGTCACCTTCATCGCCGTGATGTTTCTCTTCTCGTGCACGAACTCAGGGAACGATCCGTCGCCGAGATCGATGCCGTTCGACGAGATGGCGACGGAAATTGGACTGTAAATGAACTTGACTTTCTTGTTAGGGTCGAATTTGGAATTGAGTTGAGAATTAGGCGTAAATTTGAAGGAATCGATTTTGAGAGCCGTAACAGAGAAGGACGGGCGGTGTGGACGGTATACGACGGTGGAGGCAACGGCGATGAGGACGATTACGGTGACGATGATCGCTGTCAACCAGACGCAGATTGA

Coding sequence (CDS)

ATGTTGAAGAACCGCCGTCTTCTTCTTCGCCGTCGGAACGCCCGCCGTAATTCCGTCGCAAAGAATTTTAAGTCCAACCTTCGGCATTTTCAACCATCCCATTTTCACCTTCACTTTCGTCTCCACCTTAATCTCCAACGGCAATCCGGCTTTGCTCTTAATCGCAGCCTTCAACGAATCGACTGGCTCGCCTTCGATCTCTCCGCCACCACTTATCGCTGTCACCTTCATCGCCGTGATGTTTCTCTTCTCGTGCACGAACTCAGGGAACGATCCGTCGCCGAGATCGATGCCGTTCGACGAGATGGCGACGGAAATTGGACTGTAAATGAACTTGACTTTCTTGTTAGGGTCGAATTTGGAATTGAGTTGAGAATTAGGCGTAAATTTGAAGGAATCGATTTTGAGAGCCGTAACAGAGAAGGACGGGCGGTGTGGACGGTATACGACGGTGGAGGCAACGGCGATGAGGACGATTACGGTGACGATGATCGCTGTCAACCAGACGCAGATTGA

Protein sequence

MLKNRRLLLRRRNARRNSVAKNFKSNLRHFQPSHFHLHFRLHLNLQRQSGFALNRSLQRIDWLAFDLSATTYRCHLHRRDVSLLVHELRERSVAEIDAVRRDGDGNWTVNELDFLVRVEFGIELRIRRKFEGIDFESRNREGRAVWTVYDGGGNGDEDDYGDDDRCQPDAD

Homology

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BLAST of CmaCh17G007230 vs. NCBI nr
Match: KAF7843486.1 (protein FAR1-RELATED SEQUENCE 5-like [Senna tora])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 63/184 (34.24%), Postives = 87/184 (47.28%), Query Frame = 0


Query: 3   KNRRLLLRRRNARRNSVAKNFKSNLRHF-QPSHFHLHFRLHLNLQRQSGFALNRSLQ--- 62
           + RR LL      RNS+ +N   NLR   +PSH  LH R   + QR+S       LQ   
Sbjct: 428 RRRRQLLPGGRINRNSITRNPYPNLRCLHRPSHLRLHLRFQNHSQRKSTRVPQIRLQSAS 487

Query: 63  RIDWLAFDLSATTYRCHLHRRDVSLLVHELRERSVAEIDAVRRDGDGNWTVNELDFLVRV 122
           RI  L     A   R   +RR +   V E     VA++D V   GD +W V++ D L RV
Sbjct: 488 RITVLRRHAPAPQNRSAQNRRRILPPVLESSRDPVADVDFVGEHGDRDWIVDKGDLLARV 547

Query: 123 EFGIELRIRRKFE---GIDFESRNR-----EGRAVWTVYD---GGGNGDEDDYGDDDRCQ 172
            +G E+ +    E   G D E R R     EGRAV  V D   G G+ DE++  + +  +
Sbjct: 548 -YGGEIEVESGVENRGGSDVEVREREGIDGEGRAVGAVDDVEGGAGDADEEEEDESEEEE 607

The following BLAST results are available for this feature:

BLAST of CmaCh17G007230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G007230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G007230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7843486.1	2.9e-05	34.24	protein FAR1-RELATED SEQUENCE 5-like [Senna tora]	[more]

BLAST of CmaCh17G007230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G007230.1	CmaCh17G007230.1	mRNA