CmaCh17G006950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G006950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S3
Location	Cma_Chr17: 5752866 .. 5755400 (+)
RNA-Seq Expression	CmaCh17G006950
Synteny	CmaCh17G006950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAATTACGTTTAGAAATGTTTTTATGTTCCACATGTAATTATACAATTTACACAACATAAAAATAAGGGAAAATAAGGAGAGTCTTATATGTTAAATAATTATAAATATTGAATATTTATTTTATTTCCATGAAATTATTCATGAAAATTTTAATTGGATTCTCTTTCATACAGCCCATTAACTATTGTTGGGCCTATAAGGAAACTGGAGGCCCAATCTTTAGATGTTAAAGCCTTTAATTTGAGGATATTTTCCTCTCTCAGGGTCTCAGTGTTTCCTAGGGTTTTATTCATCTTCAACCTAGAAGTACACGCAGAGAAGCGGTGAACGGCGACATCACCAGCAACCCAACATGGCTACTCAGATGAGCAAAAAGCGAAAGGTAGGTATAGAATTCGTTTCTTGATTCTATATTTTCCATGAGACTAATTATTCTGCACATTTTGGTTTGGTTAAGACTTGCTTTATTCAATTTTGTACAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACGCCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGGTAAGAAATTTTCTCCTCTAATATTGATATTTTTGTCATTCGAATCATTGGAATAGGTTTGGGAAGATTGGAATCTGTTTTTGTTTCAGATCAAGCTACCGCTACGAGTGTCTTTTCATTTTCTCTTTTAGTATTGATATTTTTGACCTGCGGATCATCGGCATAGGTTTGGGAGTTTGGAATCTGTTTTTGTTTCATACCAAGCTACTGCTACGAGTGTTTTTTTTCTTTAACCATTATTGGTTGTGCTTCCGTCTATAACTTCCAATTTTGCTTCAAAATTATGAACTGTGTTCTCAAAATTGGAATCTCATGTAATTCTTACGAAGTTCAATTTAGAATTTTAGGCAGGTGTAAGGAGTTGTGTAGAAGTGTTTCCGCTTTGTAATTGGTTACGGCCTTGAAAACTGGGTTGGATGGCTCTCTACGTTTTAGTACAATGTTCAGATATGTTCTGTTGTTGGTGCTGGATAGTCGACAGTTGAATTTTTCTTCTGTAGAGGTTATTGGCGCTGTATGCCTGACTCGAGTTTTGATGTTTAATGTCATTGGAGGATATGGATACATTGAAGTGGATTTAAGTTCTTAGGTCAATAGCTGTTTCATTTTCCTTTCACAGGAGTCCGGTGTTTAGATATATCAAACATGTTAGAGTAGTTTAATTTTGGTGTTTTCAGTCGTTGCTTTTGGATCTGGTGTCTGACCATGTATTCAATTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGTAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTAAGAAGGTATAATAGAAATTATGGATGTTTTTGGAAACTTTTAGTTCTAGGTGCGTGCGATATCCTAATGATGAAAATTTTCTTCCTGGATACTGATTGTTTGGTTTGGAACTATGTCGTCTTTACATGTTAAACTCCTTATTTTGGCGATCACACTCCTATTCAGCATTACTTTTTCATTTTTCCAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTCAGTCCTAACTTCCATCTTTATGGAATTTGTTCTTGATGATTTGGTGGGTTTGTATTACACATCTTTATTAATTAGTAATCTGAATCATGCAGGTTATTGTTAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGTCAGTTCAGTATCATCTCAAGAGGGCATTCATTATCTTTTCTTGAATCATATATGTGGGTTGATTTGTTCTTTAATTGATGTCTCTGTTTCTTTAATTTACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCAACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAAGAGGCCAGCACACATGAGGGGAGAAAGTTGTCTAGTGTTGCTATCATAATATCATTTCTTTCAGAATATGGAATTCTAAGTTTTGATGTCATTTTTCTTCTGTTTTGAGTTTCGATTTTGGGATATTTCTGTTACAAAATATTCACAGAAGCCGTGGTACTTAACTTTATGTCGGAGCCCATAGTGTTCTAATGGTAATCTTAATGATGATGTCATTTTAGTTGTATAATTTTGGCCCGTACGGGTATACTTTTGGG

mRNA sequence

TCAAAATTACGTTTAGAAATGTTTTTATGTTCCACATGTAATTATACAATTTACACAACATAAAAATAAGGGAAAATAAGGAGAGTCTTATATGTTAAATAATTATAAATATTGAATATTTATTTTATTTCCATGAAATTATTCATGAAAATTTTAATTGGATTCTCTTTCATACAGCCCATTAACTATTGTTGGGCCTATAAGGAAACTGGAGGCCCAATCTTTAGATGTTAAAGCCTTTAATTTGAGGATATTTTCCTCTCTCAGGGTCTCAGTGTTTCCTAGGGTTTTATTCATCTTCAACCTAGAAGTACACGCAGAGAAGCGGTGAACGGCGACATCACCAGCAACCCAACATGGCTACTCAGATGAGCAAAAAGCGAAAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACGCCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGGAGTCCGTCGTTGCTTTTGGATCTGGTGTCTGACCATGTATTCAATTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGTAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTAAGAAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTTATTGTTAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCAACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAAGAGGCCAGCACACATGAGGGGAGAAAGTTGTCTAGTGTTGCTATCATAATATCATTTCTTTCAGAATATGGAATTCTAAGTTTTGATGTCATTTTTCTTCTGTTTTGAGTTTCGATTTTGGGATATTTCTGTTACAAAATATTCACAGAAGCCGTGGTACTTAACTTTATGTCGGAGCCCATAGTGTTCTAATGGTAATCTTAATGATGATGTCATTTTAGTTGTATAATTTTGGCCCGTACGGGTATACTTTTGGG

Coding sequence (CDS)

ATGGCTACTCAGATGAGCAAAAAGCGAAAGTTTGTGGCTGATGGAGTGTTCTTCGCGGAGCTAAATGAAGTTCTTACCAGAGAGCTTGCAGAGGATGGATACTCCGGAGTGGAGGTTAGGGTTACGCCAATGCGGACTGAGATTATCATTAGGGCTACTCGTACACAGAATGTTCTTGGAGTCCGTCGTTGCTTTTGGATCTGGTGTCTGACCATGTATTCAATTGTGGCTATAGGTGAGAAAGGTAGGAGAATCAGAGAATTGACATCTGTTGTTCAGAAGCGTTTCAAGTTTCCCGTAAACAGTGTTGAGCTATATGCCGAGAAGGTCAACAACAGAGGACTCTGTGCCATTGCTCAAGCTGAGTCTCTCCGCTACAAGCTTCTCGGAGGCCTTGCTGTAAGAAGGGCTTGCTATGGTGTCCTTAGATTTGTCATGGAGAGTGGAGCTAAAGGATGTGAGGTTATTGTTAGTGGTAAGCTGAGGGCCCAGCGTGCAAAATCCATGAAATTCAAGGATGGATACATGATTTCGTCTGGACAGCCAGTGAAAGAGTACATAGACTCTGCCGTGAGACACGTTCTCCTTAGACAGGGTGTTCTGGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCAAAGGGCAAGCAAGGTCCACCGACACCGCTTCCCGATTTGGTTACCATCCATACTCCCAAGGAGGAAGAGGATTTCATTAGGCCTGTGGCTGTGATTCCAACGGCTGAGATTGAAGTTGAAGCAGCAGCTTAA

Protein sequence

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGVRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIRPVAVIPTAEIEVEAAA

Homology

[Close]

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 7.3e-109
Identity = 207/254 (81.50%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFP +SVELYAEKV NRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYID+AVRHVLLRQGVLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ +I 
Sbjct: 181 QPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIA 235

Query: 241 PVAVIPTAEIEVEA 255
           P  V+  A    EA
Sbjct: 241 PAQVVTQAAFVPEA 235

[Close]

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.6e-108
Identity = 206/254 (81.10%), Postives = 216/254 (85.04%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFPV+SVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYIDSAVRHVLLRQGVLGIKVK+MLDWDPKG  GP TPLPD+V IH+PKEEE    
Sbjct: 181 QPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYA 235

Query: 241 PVAVIPTAEIEVEA 255
           P  V   A +  +A
Sbjct: 241 PAQVAAPAALVADA 235

[Close]

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.6e-106
Identity = 203/254 (79.92%), Postives = 214/254 (84.25%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFPV+SVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYID+AVRHVLLRQGVLGIKVKIMLDWDP GK GP TPLPD+V IH PK++  +  
Sbjct: 181 QPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSA 235

Query: 241 PVAVIPTAEIEVEA 255
           P        +  EA
Sbjct: 241 PAQAAAPVTLVQEA 235

[Close]

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 343.2 bits (879), Expect = 2.5e-93
Identity = 187/256 (73.05%), Postives = 199/256 (77.73%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVL 
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
            PV  Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PK+E     
Sbjct: 181 DPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE----- 229

Query: 241 PVAVIPTAEIEVEAAA 257
              ++PT  I  + AA
Sbjct: 241 ---IVPTTPISEQKAA 229

[Close]

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot
Match: P47835 (40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 7.4e-93
Identity = 186/256 (72.66%), Postives = 198/256 (77.34%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MA QMSKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVL 
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
            PV  Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PK+E     
Sbjct: 181 DPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE----- 229

Query: 241 PVAVIPTAEIEVEAAA 257
              ++PT  I  +  A
Sbjct: 241 ---IVPTTPISEQKGA 229

[Close]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL
Match: A0A6J1JPM9 (40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 237/256 (92.58%), Postives = 237/256 (92.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PVAVIPTAEIEVEAAA 257
           PVAVIPTAEIEVEAAA
Sbjct: 241 PVAVIPTAEIEVEAAA 237

[Close]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL
Match: A0A6J1GQ60 (40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 6.0e-122
Identity = 236/256 (92.19%), Postives = 236/256 (92.19%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PVAVIPTAEIEVEAAA 257
           PVAVIPTAEIEVEAAA
Sbjct: 241 PVAVIPTAEIEVEAAA 237

[Close]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL
Match: A0A6J1D813 (40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.9e-120
Identity = 233/255 (91.37%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIR 236

Query: 241 PVAVIPTAEIEVEAA 256
           PVAVIPTAEIEV AA
Sbjct: 241 PVAVIPTAEIEVAAA 236

[Close]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL
Match: A0A6J1KD29 (40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494511 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 9.6e-120
Identity = 232/255 (90.98%), Postives = 233/255 (91.37%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIH PKEEE+FIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHIPKEEEEFIR 236

Query: 241 PVAVIPTAEIEVEAA 256
           PVAVIPTAEIEV AA
Sbjct: 241 PVAVIPTAEIEVAAA 236

[Close]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL
Match: A0A5D3BYH2 (40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001190 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.1e-119
Identity = 234/256 (91.41%), Postives = 234/256 (91.41%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PV-AVIPTAEIEVEAA 256
           PV AVIPTAEIEV AA
Sbjct: 241 PVAAVIPTAEIEVGAA 237

[Close]

BLAST of CmaCh17G006950 vs. NCBI nr
Match: XP_022992377.1 (40S ribosomal protein S3-3-like [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 2.5e-122
Identity = 237/256 (92.58%), Postives = 237/256 (92.58%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PVAVIPTAEIEVEAAA 257
           PVAVIPTAEIEVEAAA
Sbjct: 241 PVAVIPTAEIEVEAAA 237

[Close]

BLAST of CmaCh17G006950 vs. NCBI nr
Match: XP_022953609.1 (40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal protein S3-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013991.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.8 bits (1148), Expect = 1.2e-121
Identity = 236/256 (92.19%), Postives = 236/256 (92.19%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PVAVIPTAEIEVEAAA 257
           PVAVIPTAEIEVEAAA
Sbjct: 241 PVAVIPTAEIEVEAAA 237

[Close]

BLAST of CmaCh17G006950 vs. NCBI nr
Match: XP_023547512.1 (40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.6e-121
Identity = 235/256 (91.80%), Postives = 235/256 (91.80%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 237

Query: 241 PVAVIPTAEIEVEAAA 257
           P AVIPTAEIEVEAAA
Sbjct: 241 PAAVIPTAEIEVEAAA 237

[Close]

BLAST of CmaCh17G006950 vs. NCBI nr
Match: XP_022149321.1 (40S ribosomal protein S3-3 [Momordica charantia])

HSP 1 Score: 441.8 bits (1135), Expect = 4.0e-120
Identity = 233/255 (91.37%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIR 236

Query: 241 PVAVIPTAEIEVEAA 256
           PVAVIPTAEIEV AA
Sbjct: 241 PVAVIPTAEIEVAAA 236

[Close]

BLAST of CmaCh17G006950 vs. NCBI nr
Match: XP_023514160.1 (40S ribosomal protein S3-3 [Cucurbita pepo subsp. pepo] >KAG7025887.1 40S ribosomal protein S3-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 232/255 (90.98%), Postives = 233/255 (91.37%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTSVVQKRFKFP NSVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEE+FIR
Sbjct: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEEFIR 236

Query: 241 PVAVIPTAEIEVEAA 256
           P AVIPTAEIEV AA
Sbjct: 241 PAAVIPTAEIEVAAA 236

[Close]

BLAST of CmaCh17G006950 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 394.8 bits (1013), Expect = 5.2e-110
Identity = 207/254 (81.50%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFP +SVELYAEKV NRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYID+AVRHVLLRQGVLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ +I 
Sbjct: 181 QPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIA 235

Query: 241 PVAVIPTAEIEVEA 255
           P  V+  A    EA
Sbjct: 241 PAQVVTQAAFVPEA 235

[Close]

BLAST of CmaCh17G006950 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 392.5 bits (1007), Expect = 2.6e-109
Identity = 206/254 (81.10%), Postives = 216/254 (85.04%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFPV+SVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYIDSAVRHVLLRQGVLGIKVK+MLDWDPKG  GP TPLPD+V IH+PKEEE    
Sbjct: 181 QPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYA 235

Query: 241 PVAVIPTAEIEVEA 255
           P  V   A +  +A
Sbjct: 241 PAQVAAPAALVADA 235

[Close]

BLAST of CmaCh17G006950 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-107
Identity = 203/254 (79.92%), Postives = 214/254 (84.25%), Query Frame = 0


Query: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL- 60

Query: 61  VRRCFWIWCLTMYSIVAIGEKGRRIRELTSVVQKRFKFPVNSVELYAEKVNNRGLCAIAQ 120
                             GEKGRRIRELTS+VQKRFKFPV+SVELYAEKVNNRGLCAIAQ
Sbjct: 61  ------------------GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQ 120

Query: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 180
           AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG
Sbjct: 121 AESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSG 180

Query: 181 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHTPKEEEDFIR 240
           QP KEYID+AVRHVLLRQGVLGIKVKIMLDWDP GK GP TPLPD+V IH PK++  +  
Sbjct: 181 QPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSA 235

Query: 241 PVAVIPTAEIEVEA 255
           P        +  EA
Sbjct: 241 PAQAAAPVTLVQEA 235

The following BLAST results are available for this feature:

BLAST of CmaCh17G006950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJA6	7.3e-109	81.50	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
Q9M339	3.6e-108	81.10	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9SIP7	2.6e-106	79.92	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
P02350	2.5e-93	73.05	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
P47835	7.4e-93	72.66	40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1	[more]

BLAST of CmaCh17G006950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPM9	1.2e-122	92.58	40S ribosomal protein S3-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488704 PE=3...	[more]
A0A6J1GQ60	6.0e-122	92.19	40S ribosomal protein S3-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456093 PE...	[more]
A0A6J1D813	1.9e-120	91.37	40S ribosomal protein S3-3 OS=Momordica charantia OX=3673 GN=LOC111017761 PE=3 S...	[more]
A0A6J1KD29	9.6e-120	90.98	40S ribosomal protein S3-3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149451...	[more]
A0A5D3BYH2	2.1e-119	91.41	40S ribosomal protein S3-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmaCh17G006950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992377.1	2.5e-122	92.58	40S ribosomal protein S3-3-like [Cucurbita maxima]	[more]
XP_022953609.1	1.2e-121	92.19	40S ribosomal protein S3-3-like [Cucurbita moschata] >KAG6575449.1 40S ribosomal...	[more]
XP_023547512.1	3.6e-121	91.80	40S ribosomal protein S3-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022149321.1	4.0e-120	91.37	40S ribosomal protein S3-3 [Momordica charantia]	[more]
XP_023514160.1	1.2e-119	90.98	40S ribosomal protein S3-3 [Cucurbita pepo subsp. pepo] >KAG7025887.1 40S riboso...	[more]

BLAST of CmaCh17G006950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35530.1	5.2e-110	81.50	Ribosomal protein S3 family protein	[more]
AT3G53870.1	2.6e-109	81.10	Ribosomal protein S3 family protein	[more]
AT2G31610.1	1.9e-107	79.92	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 125..207 e-value: 5.9E-25 score: 87.6
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 1..72 e-value: 3.1E-29 score: 102.8
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 73..111 e-value: 1.9E-12 score: 48.9
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 76..229 e-value: 1.5E-49 score: 166.4
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 112..238 e-value: 2.5E-66 score: 223.4
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 112..210
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 77..253
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 77..253 coord: 3..62
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 3..62
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 15..114 e-value: 5.75045E-46 score: 146.598
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 166..202
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 21..111 score: 9.834093
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 73..118
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 10..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G006950.1	CmaCh17G006950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding