CmaCh17G005710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G005710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor IBH1
Location	Cma_Chr17: 4698940 .. 4699383 (-)
RNA-Seq Expression	CmaCh17G005710
Synteny	CmaCh17G005710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTAAATCGGGTCGAACCCCGATCCGATCTACCTCCACCACTCTCCGATTGGCTCGAACCTTCCTCCGATCCTTTGCCAACATCAAATCCCAAGAACCCGCCATCCTTCCCTCGCCTCCGGAGCTCAGACGTCGGAGTCAACGCATTAAAATGGTGGCATATTCCTCCATGGCCCGTGCGGCCGGGCCACGGTGTGCTTGGGCTAGAGCCCTCCTCTTCAAGCTTCGGACGCGAGCTAGACACCGGACTCTAATAACACGGCGCCGCCAACACCACCGCTCGGACAACCGGGTGGGGAAGCTCCGGCGGCTGGTGCCCGGTGGGGAGAGCATGGATGTGTGCAGCTTGTTGGAGGAAACTGGGGAGTATATCCAATGCCTGAGGACGCAGGTTAAGGTGATGAAAGCCATATGTGATCACCAGTTTTCAACCAATTGA

mRNA sequence

ATGGCTTCTAAATCGGGTCGAACCCCGATCCGATCTACCTCCACCACTCTCCGATTGGCTCGAACCTTCCTCCGATCCTTTGCCAACATCAAATCCCAAGAACCCGCCATCCTTCCCTCGCCTCCGGAGCTCAGACGTCGGAGTCAACGCATTAAAATGGTGGCATATTCCTCCATGGCCCGTGCGGCCGGGCCACGGTGTGCTTGGGCTAGAGCCCTCCTCTTCAAGCTTCGGACGCGAGCTAGACACCGGACTCTAATAACACGGCGCCGCCAACACCACCGCTCGGACAACCGGGTGGGGAAGCTCCGGCGGCTGGTGCCCGGTGGGGAGAGCATGGATGTGTGCAGCTTGTTGGAGGAAACTGGGGAGTATATCCAATGCCTGAGGACGCAGGTTAAGGTGATGAAAGCCATATGTGATCACCAGTTTTCAACCAATTGA

Coding sequence (CDS)

ATGGCTTCTAAATCGGGTCGAACCCCGATCCGATCTACCTCCACCACTCTCCGATTGGCTCGAACCTTCCTCCGATCCTTTGCCAACATCAAATCCCAAGAACCCGCCATCCTTCCCTCGCCTCCGGAGCTCAGACGTCGGAGTCAACGCATTAAAATGGTGGCATATTCCTCCATGGCCCGTGCGGCCGGGCCACGGTGTGCTTGGGCTAGAGCCCTCCTCTTCAAGCTTCGGACGCGAGCTAGACACCGGACTCTAATAACACGGCGCCGCCAACACCACCGCTCGGACAACCGGGTGGGGAAGCTCCGGCGGCTGGTGCCCGGTGGGGAGAGCATGGATGTGTGCAGCTTGTTGGAGGAAACTGGGGAGTATATCCAATGCCTGAGGACGCAGGTTAAGGTGATGAAAGCCATATGTGATCACCAGTTTTCAACCAATTGA

Protein sequence

MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMKAICDHQFSTN

Homology

[Close]

BLAST of CmaCh17G005710 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 23  FLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRC-AWARALLFKLR--- 82
           FL+S +N++ Q P    +P +   R ++IK  AY SMARAAG     W+RALL +     
Sbjct: 22  FLQSLSNLRKQNP--FDTPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALLRRADKDD 81

Query: 83  ------TRARHRTLITRRRQHHRS---DNRVGKLRRLVPGGESMDVCSLLEETGEYIQCL 142
                 +R + +    RRR + R+   +    +LR LVPGG  M+   L+EET  YI+CL
Sbjct: 82  NKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGGGGMETSKLMEETAHYIKCL 141

[Close]

BLAST of CmaCh17G005710 vs. ExPASy Swiss-Prot
Match: Q7XR02 (Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 60/170 (35.29%), Postives = 81/170 (47.65%), Query Frame = 0


Query: 12  STSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRCAWAR 71
           + +T   LA  FLR+ + I    P        + RR++ I+  AYSSMARAA PR AW+R
Sbjct: 37  AAATKHMLAFHFLRALSRIHRATP--------VTRRTRTIRRAAYSSMARAASPRRAWSR 96

Query: 72  ALLFKLRTRARHRTL------ITRRR---------------------------------- 131
           ALL ++R R R RTL      + RRR                                  
Sbjct: 97  ALLGQVRAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAGETSAAARAVPPPP 156

Query: 132 QHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMKAICD 142
           +      R   LRRLVPGG  M+  SLLEET +Y++ LR QV++M+ + D
Sbjct: 157 RQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGLVD 197

[Close]

BLAST of CmaCh17G005710 vs. ExPASy Swiss-Prot
Match: Q01I07 (Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 60/170 (35.29%), Postives = 80/170 (47.06%), Query Frame = 0


Query: 12  STSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRCAWAR 71
           + +T   LA  FLR+ + I    P        + RR++ I+  AYSSMARAA PR AW+R
Sbjct: 37  AAATKHMLAFHFLRALSRIHRATP--------VTRRTRTIRRAAYSSMARAASPRRAWSR 96

Query: 72  ALLFKLRTRARHRTL------ITRRR---------------------------------- 131
           ALL + R R R RTL      + RRR                                  
Sbjct: 97  ALLGQARAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAGETSAAARAVPPPP 156

Query: 132 QHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMKAICD 142
           +      R   LRRLVPGG  M+  SLLEET +Y++ LR QV++M+ + D
Sbjct: 157 RQQGEPPRADALRRLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGLVD 197

[Close]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL
Match: A0A5D3BPL2 (Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00050 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.3e-40
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 3   SKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSQRIKMVAYSSMA 62
           SKS  T + STS+  R ARTFLR F+ IKSQ  A   S  P +L+R+SQRIKMVAYSSMA
Sbjct: 4   SKSAITLLNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMA 63

Query: 63  RAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS-DNRVGKLRRLVPGGESMDVCSLL 122
           R AGPR AWARALLFKL+TR RHRTL+ R+R+   S D++VGKLRRL+PGGE+MDVC+LL
Sbjct: 64  RVAGPRRAWARALLFKLQTRPRHRTLMRRKRRPSTSPDDQVGKLRRLLPGGETMDVCTLL 123

Query: 123 EETGEYIQCLRTQVKVMKAICDHQFST 147
           EET  YI CL TQVKVMKAI D   ST
Sbjct: 124 EETANYIHCLSTQVKVMKAISDQHLST 150

[Close]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL
Match: A0A1S3CLD3 (transcription factor IBH1 OS=Cucumis melo OX=3656 GN=LOC103502249 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.3e-40
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 3   SKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSQRIKMVAYSSMA 62
           SKS  T + STS+  R ARTFLR F+ IKSQ  A   S  P +L+R+SQRIKMVAYSSMA
Sbjct: 4   SKSAITLLNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMA 63

Query: 63  RAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS-DNRVGKLRRLVPGGESMDVCSLL 122
           R AGPR AWARALLFKL+TR RHRTL+ R+R+   S D++VGKLRRL+PGGE+MDVC+LL
Sbjct: 64  RVAGPRRAWARALLFKLQTRPRHRTLMRRKRRPSTSPDDQVGKLRRLLPGGETMDVCTLL 123

Query: 123 EETGEYIQCLRTQVKVMKAICDHQFST 147
           EET  YI CL TQVKVMKAI D   ST
Sbjct: 124 EETANYIHCLSTQVKVMKAISDQHLST 150

[Close]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL
Match: A0A6J1KS83 (transcription factor IBH1 OS=Cucurbita maxima OX=3661 GN=LOC111498183 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.6e-37
Identity = 96/147 (65.31%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSQRIKMVAYSS 60
           MA +SG TP+ S+S++LRLARTFLRSF+ IKS+ P  A   S  ELRRRS+RIK+ AYSS
Sbjct: 1   MAYESGITPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSS 60

Query: 61  MARAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS---DNRVGKLRRLVPGGESMDV 120
           MAR AGP+  WARALLFKL TRARHRT + RR     S   D+ VGKLRRLVPGG+ MDV
Sbjct: 61  MARVAGPQRTWARALLFKLNTRARHRTSMRRRCSTMPSAYPDDHVGKLRRLVPGGDGMDV 120

Query: 121 CSLLEETGEYIQCLRTQVKVMKAICDH 143
           C+LLEET +YI CL  QVKVM AI  H
Sbjct: 121 CTLLEETADYIHCLSAQVKVMNAIAHH 147

[Close]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL
Match: A0A0A0KDQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020740 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 86/144 (59.72%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 3   SKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARA 62
           SKS  T + STS+ L  ART   +FA+           P +L+R+S+RIKM AYSSMAR 
Sbjct: 4   SKSAITLLNSTSSRLCFART-SATFAS---------APPDQLKRQSRRIKMAAYSSMARV 63

Query: 63  AGPRCAWARALLFKLRTRARHRTLITR-RRQHHRSDNRVGKLRRLVPGGESMDVCSLLEE 122
           AG R AWARALLF+L TR RH+TL+ R RR    SD+ VGKLRRL+PGGE+MDVC+LLEE
Sbjct: 64  AGRRRAWARALLFRLHTRPRHKTLMRRKRRPSTSSDDMVGKLRRLLPGGETMDVCTLLEE 123

Query: 123 TGEYIQCLRTQVKVMKAICDHQFS 146
           T  YI CL TQVKVMKAI +H  S
Sbjct: 124 TANYIHCLSTQVKVMKAISNHHLS 137

[Close]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL
Match: A0A7N2RCD6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 10  IRSTSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRCAW 69
           + + S  ++ AR F+R+   ++   P+   S  E+R+RSQRIK+ AYSSMA A G R AW
Sbjct: 8   LNTNSHKIKFARRFIRTLLKMRKNAPS-SSSIEEIRKRSQRIKIAAYSSMAHAVGSRRAW 67

Query: 70  ARALLFKLRTRARHRTLITRRRQHHR--------SDNRVGKLRRLVPGGESMDVCSLLEE 129
           +RA+LFKLR RARH  ++ RR    R          ++  KLR+LVPGG++MD+CSLLEE
Sbjct: 68  SRAILFKLRNRARHHGMMRRRSMKKRVIKNDPPGDQSQTNKLRQLVPGGKAMDMCSLLEE 127

Query: 130 TGEYIQCLRTQVKVMKAICDH 143
           T  YI CL TQVKVM+ I DH
Sbjct: 128 TAHYISCLSTQVKVMQTIADH 147

[Close]

BLAST of CmaCh17G005710 vs. NCBI nr
Match: KAG6575326.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013866.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMA 60
           MASKSGRTPIRSTS+TLRLARTFLRSFANIKSQEPAILPSPPELRRRS+RIKM+AYSSMA
Sbjct: 1   MASKSGRTPIRSTSSTLRLARTFLRSFANIKSQEPAILPSPPELRRRSRRIKMMAYSSMA 60

Query: 61  RAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLE 120
           R AGPRCAWARALLFKLRTRARHRTLITRRR HHRSD+RVGKLRRLVPGGESMDVC+LLE
Sbjct: 61  RTAGPRCAWARALLFKLRTRARHRTLITRRRHHHRSDDRVGKLRRLVPGGESMDVCTLLE 120

Query: 121 ETGEYIQCLRTQVKVMKAICDHQFSTN 148
           ETGEYIQCL  QVKVMKAICDHQFSTN
Sbjct: 121 ETGEYIQCLSAQVKVMKAICDHQFSTN 147

[Close]

BLAST of CmaCh17G005710 vs. NCBI nr
Match: XP_023548405.1 (transcription factor IBH1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 4.5e-68
Identity = 138/147 (93.88%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMA 60
           MASKSGRTPIRSTST LRLARTFLRSFANIKSQEPAILPSPPEL+R+S+RIKMVAYSSMA
Sbjct: 1   MASKSGRTPIRSTSTALRLARTFLRSFANIKSQEPAILPSPPELKRQSRRIKMVAYSSMA 60

Query: 61  RAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLE 120
           RAAGPRCAWARALLFKLR RARHRTLITRRR HH SD+RVGKLRRLVPGGE MDVCSLLE
Sbjct: 61  RAAGPRCAWARALLFKLRMRARHRTLITRRRYHHHSDDRVGKLRRLVPGGERMDVCSLLE 120

Query: 121 ETGEYIQCLRTQVKVMKAICDHQFSTN 148
           ETGEYIQCLRTQVKVMKAICDHQFSTN
Sbjct: 121 ETGEYIQCLRTQVKVMKAICDHQFSTN 147

[Close]

BLAST of CmaCh17G005710 vs. NCBI nr
Match: XP_008464343.1 (PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription factor IBH1 [Cucumis melo var. makuwa] >TYK01643.1 transcription factor IBH1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 8.9e-40
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 3   SKSGRTPIRSTSTTLRLARTFLRSFANIKSQEPAILPS--PPELRRRSQRIKMVAYSSMA 62
           SKS  T + STS+  R ARTFLR F+ IKSQ  A   S  P +L+R+SQRIKMVAYSSMA
Sbjct: 4   SKSAITLLNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMA 63

Query: 63  RAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS-DNRVGKLRRLVPGGESMDVCSLL 122
           R AGPR AWARALLFKL+TR RHRTL+ R+R+   S D++VGKLRRL+PGGE+MDVC+LL
Sbjct: 64  RVAGPRRAWARALLFKLQTRPRHRTLMRRKRRPSTSPDDQVGKLRRLLPGGETMDVCTLL 123

Query: 123 EETGEYIQCLRTQVKVMKAICDHQFST 147
           EET  YI CL TQVKVMKAI D   ST
Sbjct: 124 EETANYIHCLSTQVKVMKAISDQHLST 150

[Close]

BLAST of CmaCh17G005710 vs. NCBI nr
Match: KAG7025295.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-39
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 0


Query: 1   MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSQRIKMVAYSS 60
           MAS+SG TP+ S+S++LRLARTFLRSF+ IKS+ P  A   S  ELRRRS+RIK+ AYSS
Sbjct: 1   MASESGTTPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSS 60

Query: 61  MARAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS---DNRVGKLRRLVPGGESMDV 120
           MAR AGP+ AWARALLFKL TRARH TL+ RRR    S   D+ VGKLRRL+PGG+ MDV
Sbjct: 61  MARVAGPQRAWARALLFKLNTRARHGTLMRRRRSTMPSAYPDDHVGKLRRLLPGGDGMDV 120

Query: 121 CSLLEETGEYIQCLRTQVKVMKAICDHQFSTN 148
           C+LLEET +YI CL  QVKVM AI  H  STN
Sbjct: 121 CTLLEETADYIHCLSAQVKVMNAIA-HHLSTN 151

[Close]

BLAST of CmaCh17G005710 vs. NCBI nr
Match: XP_023005092.1 (transcription factor IBH1 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 5.4e-37
Identity = 96/147 (65.31%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MASKSGRTPIRSTSTTLRLARTFLRSFANIKSQEP--AILPSPPELRRRSQRIKMVAYSS 60
           MA +SG TP+ S+S++LRLARTFLRSF+ IKS+ P  A   S  ELRRRS+RIK+ AYSS
Sbjct: 1   MAYESGITPMNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSS 60

Query: 61  MARAAGPRCAWARALLFKLRTRARHRTLITRRRQHHRS---DNRVGKLRRLVPGGESMDV 120
           MAR AGP+  WARALLFKL TRARHRT + RR     S   D+ VGKLRRLVPGG+ MDV
Sbjct: 61  MARVAGPQRTWARALLFKLNTRARHRTSMRRRCSTMPSAYPDDHVGKLRRLVPGGDGMDV 120

Query: 121 CSLLEETGEYIQCLRTQVKVMKAICDH 143
           C+LLEET +YI CL  QVKVM AI  H
Sbjct: 121 CTLLEETADYIHCLSAQVKVMNAIAHH 147

[Close]

BLAST of CmaCh17G005710 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-14
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 23  FLRSFANIKSQEPAILPSPPELRRRSQRIKMVAYSSMARAAGPRC-AWARALLFKLR--- 82
           FL+S +N++ Q P    +P +   R ++IK  AY SMARAAG     W+RALL +     
Sbjct: 22  FLQSLSNLRKQNP--FDTPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALLRRADKDD 81

Query: 83  ------TRARHRTLITRRRQHHRS---DNRVGKLRRLVPGGESMDVCSLLEETGEYIQCL 142
                 +R + +    RRR + R+   +    +LR LVPGG  M+   L+EET  YI+CL
Sbjct: 82  NKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGGGGMETSKLMEETAHYIKCL 141

[Close]

BLAST of CmaCh17G005710 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05
Identity = 21/61 (34.43%), Postives = 34/61 (55.74%), Query Frame = 0


Query: 87  ITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMKAICDHQFST 146
           +  R++  R   ++  L+ LVPGG  MD  S+L+E   Y++ LR QVK ++ +      T
Sbjct: 282 VAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQT 341

Query: 147 N 148
           N
Sbjct: 342 N 342

[Close]

BLAST of CmaCh17G005710 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 19/41 (46.34%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 99  RVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMKAI 140
           R+ +L++L+PGGE M++  +L E G YI CL  Q+ V+K+I
Sbjct: 129 RLKELQKLLPGGEEMNMEEILSEIGSYIVCLELQMIVLKSI 169

[Close]

BLAST of CmaCh17G005710 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-04
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 84  RTLITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVMK 138
           +T++ RRR+  R   ++  L+R+VPGG  MD  S+L+E   Y + L+ QV++++
Sbjct: 123 QTVVARRRR-ERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CmaCh17G005710 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.8e-04
Identity = 18/50 (36.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 87  ITRRRQHHRSDNRVGKLRRLVPGGESMDVCSLLEETGEYIQCLRTQVKVM 137
           +  R +  R   R+  L+RLVPGG  MD  S+L+E   Y++ L+ Q++++
Sbjct: 132 VAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

The following BLAST results are available for this feature:

BLAST of CmaCh17G005710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKX1	1.3e-12	38.64	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]
Q7XR02	1.1e-11	35.29	Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 ...	[more]
Q01I07	1.4e-11	35.29	Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV...	[more]

BLAST of CmaCh17G005710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPL2	4.3e-40	67.35	Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CLD3	4.3e-40	67.35	transcription factor IBH1 OS=Cucumis melo OX=3656 GN=LOC103502249 PE=4 SV=1	[more]
A0A6J1KS83	2.6e-37	65.31	transcription factor IBH1 OS=Cucurbita maxima OX=3661 GN=LOC111498183 PE=4 SV=1	[more]
A0A0A0KDQ3	4.1e-30	59.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020740 PE=4 SV=1	[more]
A0A7N2RCD6	1.4e-25	49.65	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmaCh17G005710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575326.1	1.6e-68	93.88	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_023548405.1	4.5e-68	93.88	transcription factor IBH1 [Cucurbita pepo subsp. pepo]	[more]
XP_008464343.1	8.9e-40	67.35	PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription ...	[more]
KAG7025295.1	2.0e-39	66.45	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023005092.1	5.4e-37	65.31	transcription factor IBH1 [Cucurbita maxima]	[more]

BLAST of CmaCh17G005710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43060.1	9.0e-14	38.64	ILI1 binding bHLH 1	[more]
AT3G21330.1	7.6e-05	34.43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G18969.1	1.3e-04	46.34	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc...	[more]
AT4G00120.1	2.9e-04	37.04	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.8e-04	36.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 10..143
None	No IPR available	PANTHER	PTHR33124:SF76	TRANSCRIPTION FACTOR IBH1-LIKE	coord: 10..143
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 80..129 score: 9.013123
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 99..139 e-value: 5.29548E-13 score: 58.0176
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 80..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005710.1	CmaCh17G005710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity