CmaCh17G003430 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G003430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr17: 1865398 .. 1865646 (+)
RNA-Seq ExpressionCmaCh17G003430
SyntenyCmaCh17G003430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

mRNA sequence

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

Coding sequence (CDS)

ATGGCTCCTCGTGCTGACCTGGCAAAGATTGGACGAGAAGGATTCGAACTAATTGACGAATACTTCGGTCGAGTACCGGCGACGAGAAGACCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAACAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTGCCGGTGAACTGCAATCAGGTCGCCAGAGCCCGCGGCGGAGTTGTGATAACGACTTGGCGTGCGGCAAAATGA

Protein sequence

MAPRADLAKIGREGFELIDEYFGRVPATRRPAAAARPALPQAPCKAEQPPRKMREKLPVPVNCNQVARARGGVVITTWRAAK
Homology
BLAST of CmaCh17G003430 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 4  RADLAKIGREGFELIDEYFGRVPAT--RRPAA-AARPALPQAPCKAEQPPRKMREKLPVP 63
          R DLAKIGREGF++IDEYFGR  +T  RR AA  ARPALPQ P KAEQPPR  +EK    
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVARARGGVVITTWR 80
          V  +QVA+  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

BLAST of CmaCh17G003430 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 5  ADLAKIGREGFELIDEYFGRVPAT--RRPAAAA--RPALPQAPCK-AEQPPRKMREKLPV 64
          A+LA+IG EGF+LID++FGR   T  RR  AA   RPA  Q P K AEQPP K +EK   
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 65 PVNCNQVARARGGVVITTWRA 81
           V  + +A+ RGG+VITTWR+
Sbjct: 73 VVTSDHLAKTRGGIVITTWRS 93

BLAST of CmaCh17G003430 vs. ExPASy TrEMBL
Match: A0A5A7U5Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001240 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 4  RADLAKIGREGFELIDEYFGRVPATRRPAAAARPALPQAPCKAEQPPRKMREKLPVPVNC 63
          R DLA+IG E F LI+E++ R    RRP     PA PQ P  A QPP++M E  P P+ C
Sbjct: 9  RNDLARIGVEAFALIEEHYDR--PRRRPRQVV-PAPPQ-PVVAIQPPKRMVESSP-PIRC 68

Query: 64 NQVARARGGVVITTW 79
          +Q+A+A GG++I  W
Sbjct: 69 DQLAKAHGGIIIKEW 78

BLAST of CmaCh17G003430 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRPAAAARPALPQAPCKAEQPPRKMREKLPVP 60
          MAPRADLAKIGREGFELIDEYFGRVPATRRP A ARPALPQAPCKAEQPPRKMREKLPVP
Sbjct: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRP-AVARPALPQAPCKAEQPPRKMREKLPVP 60

Query: 61 VNCNQVARARGGVVITTWRAAK 83
          VNCNQVARARGGVVITTWRA K
Sbjct: 61 VNCNQVARARGGVVITTWRAPK 81

BLAST of CmaCh17G003430 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0

Query: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRPA--AAARPALPQAPCKAEQPPRKMREKLP 60
          MA R DLAKIGREGF+LIDEYFGR PATRR A  AAARPALPQAPCKAEQPPRK REK+P
Sbjct: 1  MARRGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMP 60

Query: 61 VPVNCNQVARARGGVVITTWRAAK 83
          V VNCNQVA+ARGG+VITTWRAAK
Sbjct: 61 VAVNCNQVAKARGGIVITTWRAAK 84

BLAST of CmaCh17G003430 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 0

Query: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRPAAAA--RPALPQAPCKAEQPPRKMREKLP 60
          MAPRADLAKIGREGFELIDEYFGRVPATRR AAAA  RPALPQAPCKAEQPPRKMREKLP
Sbjct: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREKLP 60

Query: 61 VPVNCNQ 66
          VPVNCNQ
Sbjct: 61 VPVNCNQ 67

BLAST of CmaCh17G003430 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 4  RADLAKIGREGFELIDEYFGRVPAT--RRPAA-AARPALPQAPCKAEQPPRKMREKLPVP 63
          R DLAKIGREGF++IDEYFGR  +T  RR AA  ARPALPQ P KAEQPPR  +EK    
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVARARGGVVITTWR 80
          V  +QVA+  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

BLAST of CmaCh17G003430 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 5  ADLAKIGREGFELIDEYFGRVPAT--RRPAAAA--RPALPQAPCK-AEQPPRKMREKLPV 64
          A+LA+IG EGF+LID++FGR   T  RR  AA   RPA  Q P K AEQPP K +EK   
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 65 PVNCNQVARARGGVVITTWRA 81
           V  + +A+ RGG+VITTWR+
Sbjct: 73 VVTSDHLAKTRGGIVITTWRS 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KG951.6e-1565.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI191.3e-0954.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1[more]
A0A5A7U5Q56.6e-0648.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6575082.16.3e-3596.34hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575081.11.2e-3085.71hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548315.11.6e-2595.52multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p... [more]
KGN47422.13.3e-1565.82hypothetical protein Csa_021740 [Cucumis sativus][more]
KGN47421.12.7e-0954.32hypothetical protein Csa_021737 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G003430.1CmaCh17G003430.1mRNA