CmaCh17G003040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G003040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	classical arabinogalactan protein 25-like
Location	Cma_Chr17: 1634101 .. 1634466 (+)
RNA-Seq Expression	CmaCh17G003040
Synteny	CmaCh17G003040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCTTTTGGTATTGTGCAGCAGTCATTATGGCATTCATGGCCTCACCTTTGCTTGCCTTACCATCTCTACCCAATCCAAAACTCAGCCCCTCTTTTCAAGAACTCTCCCCTGATATCGCTCCATTATTGCCTTCTACAGGCGGTAACATTCCTTCTGCAACTGGTTCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGCCCTGATTCCTCTGCCCTTTCCCCATTTGGGTTACCAGGTTCCTTTGCAGCCCCTAAACCCCTGCCTCCCTATTCAAATTCCCTTCTTCTCACTGCCCTATCACTTCATGCCTTCTATCTGCACTTACATTGA

mRNA sequence

ATGGCCTCCTTTTGGTATTGTGCAGCAGTCATTATGGCATTCATGGCCTCACCTTTGCTTGCCTTACCATCTCTACCCAATCCAAAACTCAGCCCCTCTTTTCAAGAACTCTCCCCTGATATCGCTCCATTATTGCCTTCTACAGGCGGTAACATTCCTTCTGCAACTGGTTCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGCCCTGATTCCTCTGCCCTTTCCCCATTTGGGTTACCAGGTTCCTTTGCAGCCCCTAAACCCCTGCCTCCCTATTCAAATTCCCTTCTTCTCACTGCCCTATCACTTCATGCCTTCTATCTGCACTTACATTGA

Coding sequence (CDS)

ATGGCCTCCTTTTGGTATTGTGCAGCAGTCATTATGGCATTCATGGCCTCACCTTTGCTTGCCTTACCATCTCTACCCAATCCAAAACTCAGCCCCTCTTTTCAAGAACTCTCCCCTGATATCGCTCCATTATTGCCTTCTACAGGCGGTAACATTCCTTCTGCAACTGGTTCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGCCCTGATTCCTCTGCCCTTTCCCCATTTGGGTTACCAGGTTCCTTTGCAGCCCCTAAACCCCTGCCTCCCTATTCAAATTCCCTTCTTCTCACTGCCCTATCACTTCATGCCTTCTATCTGCACTTACATTGA

Protein sequence

MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHLH

Homology

[Close]

BLAST of CmaCh17G003040 vs. ExPASy Swiss-Prot
Match: Q6NN00 (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 35  QELSPDIAPLLPSTGGNIPSATGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPG-SF 94
           Q+LSP+IAPLLPS G  +PS  GS  TIPS+PSPP+PD  +   PD  A SPF  P  S 
Sbjct: 31  QQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDPLAFSPFASPPVSS 90

Query: 95  AAPKPLPPYSNSLLLTALSLHAFYLHL 121
            +P P  P +  LL++ +   A +L L
Sbjct: 91  PSPPPSLPSAGVLLISLIISSASFLAL 116

[Close]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL
Match: A0A6J1KVY5 (classical arabinogalactan protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111499190 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL 120
           TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL
Match: A0A6J1H4T0 (classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111460056 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMA MASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIP
Sbjct: 1   MASFWYCAAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNS-LLLTALSLHAFYLH 120
           TIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPKPLPPYSNS LLLTALSLHAFYLH
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLH 120

Query: 121 LH 122
           LH
Sbjct: 121 LH 122

[Close]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL
Match: A0A5A7SSC0 (Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001190 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.2e-41
Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATG-SI 60
           MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSN--SLLLTALSLHAFY 120
           PTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  LP YSN   LLL  L+L AF 
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFS 120

Query: 121 LHLH 122
           +HLH
Sbjct: 121 MHLH 124

[Close]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL
Match: A0A1S3C8K2 (classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.2e-41
Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATG-SI 60
           MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSN--SLLLTALSLHAFY 120
           PTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  LP YSN   LLL  L+L AF 
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFS 120

Query: 121 LHLH 122
           +HLH
Sbjct: 121 MHLH 124

[Close]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL
Match: A0A0A0KBF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATG-SI 60
           MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSN--SLLLTALSLHAFY 120
           PTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  LP YSN   LLL  L+L  F 
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120

Query: 121 LHLH 122
           +HLH
Sbjct: 121 MHLH 124

[Close]

BLAST of CmaCh17G003040 vs. NCBI nr
Match: XP_023006472.1 (classical arabinogalactan protein 25-like [Cucurbita maxima])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL 120
           TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLTALSLHAFYLHL 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of CmaCh17G003040 vs. NCBI nr
Match: XP_023547783.1 (classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMAFMASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNS-LLLTALSLHAFYLH 120
           TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNS LLLTALSLHAFYLH
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLH 120

Query: 121 LH 122
           LH
Sbjct: 121 LH 122

[Close]

BLAST of CmaCh17G003040 vs. NCBI nr
Match: XP_022958905.1 (classical arabinogalactan protein 25-like [Cucurbita moschata])

HSP 1 Score: 218.0 bits (554), Expect = 4.4e-53
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMA MASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIP
Sbjct: 1   MASFWYCAAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNS-LLLTALSLHAFYLH 120
           TIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPKPLPPYSNS LLLTALSLHAFYLH
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLH 120

Query: 121 LH 122
           LH
Sbjct: 121 LH 122

[Close]

BLAST of CmaCh17G003040 vs. NCBI nr
Match: KAG6575045.1 (hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013621.1 hypothetical protein SDJN02_23788, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.2 bits (552), Expect = 7.6e-53
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATGSIP 60
           MASFWYCAAVIMAFMASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIP
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIP 60

Query: 61  TIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNS-LLLTALSLHAFYLH 120
           TIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPK LPPYSNS LLLTALSLHAFYLH
Sbjct: 61  TIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLPPYSNSLLLLTALSLHAFYLH 120

Query: 121 LH 122
           LH
Sbjct: 121 LH 122

[Close]

BLAST of CmaCh17G003040 vs. NCBI nr
Match: XP_008458497.1 (PREDICTED: classical arabinogalactan protein 25 [Cucumis melo] >KAA0033458.1 classical arabinogalactan protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-40
Identity = 99/124 (79.84%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSPSFQELSPDIAPLLPSTGGNIPSATG-SI 60
           MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSN--SLLLTALSLHAFY 120
           PTIPSNPSPPNPD+FEA GPDSSALSPFGLPGSFA P  LP YSN   LLL  L+L AF 
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFS 120

Query: 121 LHLH 122
           +HLH
Sbjct: 121 MHLH 124

[Close]

BLAST of CmaCh17G003040 vs. TAIR 10
Match: AT5G18690.1 (arabinogalactan protein 25 )

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 35  QELSPDIAPLLPSTGGNIPSATGSIPTIPSNPSPPNPDEFEAPGPDSSALSPFGLPG-SF 94
           Q+LSP+IAPLLPS G  +PS  GS  TIPS+PSPP+PD  +   PD  A SPF  P  S 
Sbjct: 31  QQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDPLAFSPFASPPVSS 90

Query: 95  AAPKPLPPYSNSLLLTALSLHAFYLHL 121
            +P P  P +  LL++ +   A +L L
Sbjct: 91  PSPPPSLPSAGVLLISLIISSASFLAL 116

The following BLAST results are available for this feature:

BLAST of CmaCh17G003040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN00	2.6e-08	48.28	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE...	[more]

BLAST of CmaCh17G003040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVY5	1.3e-58	100.00	classical arabinogalactan protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1H4T0	2.1e-53	94.26	classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7SSC0	7.2e-41	79.84	Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C8K2	7.2e-41	79.84	classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=...	[more]
A0A0A0KBF8	2.1e-40	79.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1	[more]

BLAST of CmaCh17G003040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006472.1	2.7e-58	100.00	classical arabinogalactan protein 25-like [Cucurbita maxima]	[more]
XP_023547783.1	1.8e-54	95.90	classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958905.1	4.4e-53	94.26	classical arabinogalactan protein 25-like [Cucurbita moschata]	[more]
KAG6575045.1	7.6e-53	94.26	hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008458497.1	1.5e-40	79.84	PREDICTED: classical arabinogalactan protein 25 [Cucumis melo] >KAA0033458.1 cla...	[more]

BLAST of CmaCh17G003040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18690.1	1.9e-09	48.28	arabinogalactan protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..89
None	No IPR available	PANTHER	PTHR35725:SF3	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 1..111
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G003040.1	CmaCh17G003040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane