CmaCh17G000510 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Tubulin-specific chaperone A
Location	Cma_Chr17: 221809 .. 223995 (-)
RNA-Seq Expression	CmaCh17G000510
Synteny	CmaCh17G000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGGGGTCGTGTGGCTTGTTTTGTACTGCGCATTATTTGGGTGGAAAACTCCATTGATGTGCTAATAGAAAAGGAAGCAACTCCCAAAGAAGAGATCAGGGTTTCTTCTCCACCAACTCCGTAGAATTTTGGATCAAGATTTCGTCGACGATCAAGTTCTTCCGGCGCAGGTCGGTTTTTTCTTCGCTTTTTTCTAGCTTTTGCGCTTCTTCAATCTTCTCCAATGATTTCCAATCGAAACAATCTATTGAATCTCGACATGCATTGATCCTTCGATTCAGTTTCCCCTTTGTTAGCCATTTCTGCCTTTCTTCTATATCTTTTAGTTTCGCCGTGTCTAGATCTTGGGCGGCGTATCGTCTATGATTTCACATGCGTTTCTGCTTCTCCTTTTTCTTTTATAGATTTGCTTAGATTTGAGATAGATTACGTCTTTTTGTGGTTACGCTTATGTTAGGGCTTAATCGTCTCTTCAAATGAAATGAGCAATCGAAGTCTTGATATTTATTGAAATTCGTAGTGTAGGTTGAATATATGAGTTTTTGTCGCCACTCCGAGTGCTAGTGCGGCTAGAAAACTCTGGTTGGGAGTTCTTCTAAGACCGTGAACTTGTGTGTGTAGCAACATTGATGTTATCAATATGTTATGTGATTCTGAGCTACAACAATGCTTCTGTTTCTTCAGAATAACTGGTCTTGTGTAATGTTACCCCCCAGGCTAGTTGTATATTTTGATAAGACGCTCATTGATCAAGTGCATATCTCTCTTTGAACAAGAATCGTGTCCGGAGAAACCTTGACTTGGTTGAAATTGTTCCTTGGAACATCTACACGTATTAAGAATGTGGGCGACACTTTATCATAGACATTGAAGTTAACGATCTTCACTGTTAAAGAAATTTGGTATCCGCGAGCTTCATCATGATTTTTTGTTTAGAGGTGTGGTGGGAATGAACATTATTACCCCTGAGAAATTTGAAGAAGAGCTTACCTCCATGATACAGGAAACTTTGAAAAACCATGTCCTGAGTCTAAAGTTCTGATAGCATCTTAGGGTTTAAGAAGAGGAAAGAATGTATTACTGATTAATTACCATGAATTCACACGACCCCTGACGAACTTTAACAACTTAACTTCAAGAAATTGATAACATTAATTTGCAATGAACTTTGTTTAACCGTGTAAATCAAAGTTGTGCCATTATGCTTTTTGGAGTTCCAATTTTCATGCTTTTGTGAGAAGCAAAGTCTTCTCTGTTTAACCATTTCGAGTTTTGACCCCCCTATAAGAGGTTTGTGGATCACAAATCCACGATAAATTCTTCTGATGATAGGACAGTATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGTACGTAAATGGCTTGCATTCTTAATAATCAAAAGTTTATACGATTATTGTTGGCTTGATTGCTTGTGGTTTTATTTGTGCCATCCGTGAATATCTTAAAGAAGACTTTTTAGACTGACTTGTTCAACATTACTCAATATGAACAATAGAATTTGTGAGCGTGTAGATTATGTGATTTGAACTATGGAGAAGAATAATGGTCCCAAATTTGGAACATAATTTCTGTTCAACTTTATGTTTTGAAAGCTATAAAATCAAAACGACCAACTAAAATATTATTTCGGTAATGGAGATTGAATGAAATGTTATCATCATATGAATCATCTTCTTCAATTGGTCTATATATTATTATGATTTTACAGTTAGCATTCTCACTGTAAGCAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGTATTGGCTTTTCATTCCCTTTTTTGCTCTTATGAGGAGCTTGATTCTAGAAGGTTATCTGCACGTGCCCAATTTTTGTTAGTTTACTAAAACAAATCCTTATCGACTTCTTCATGTCCAGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

mRNA sequence

AAGCGGGGTCGTGTGGCTTGTTTTGTACTGCGCATTATTTGGGTGGAAAACTCCATTGATGTGCTAATAGAAAAGGAAGCAACTCCCAAAGAAGAGATCAGGGTTTCTTCTCCACCAACTCCGTAGAATTTTGGATCAAGATTTCGTCGACGATCAAGTTCTTCCGGCGCAGGACAGTATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

Coding sequence (CDS)

ATGGCTACAGTAAAGAACCTGAAGATTAAGACAGCAACCTGCAAACGCATTATCAAGGAGTTGCATTCTTACGAGAAGGAGGTCGAGAGAGAAGCTGCCAAAACCGCTGACATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAGCAACAGGAAAACGTTCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGTCCGCCTTAGCTGATCTGAAAGGAACACTGGATGAACTGGAAAAATCAACACAAGTGAAAGGCCCTGAGTTTGACGATGCTCGGAGCATAATCACTGAGATCGAAAGTTTCCTTAAGACAACAGAGGAATAG

Protein sequence

MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE

Homology

[Close]

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot
Match: O04350 (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 4.9e-41
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDCHKRLESALADLK TL ELE++ + +GPE +DA+  + ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot
Match: P80585 (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-13
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE A ADL   L E EK  + +  E+ +ARSI+  ++
Sbjct: 66  DCQRRLEIAHADLTQLL-ENEKELE-EAEEYKEARSILESVK 105

[Close]

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot
Match: O75347 (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-13
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLE-EAEEYKEARLVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot
Match: Q6PEC1 (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-13
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLE-EAEEYKEARIVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot
Match: P48428 (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIE 106
           DC +RLE+A  DL+  L E EK  + +  E+ +AR ++  ++
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLE-EAEEYKEARVVLDSVK 105

[Close]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL
Match: A0A6J1KV46 (Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.6e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL
Match: A0A6J1H416 (Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE+ALADLKGTLDELEKSTQVKGPEF+DARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL
Match: A0A6J1DQ83 (Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           M+PDCHKRLE++LADLKG L ELE+STQ KGPEFD+ARS I+E+E+FLKTTEE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL
Match: A0A5D3DLX2 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00640 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45
Identity = 100/113 (88.50%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 128 MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 187

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L ELEKST+ KGPEFDDARS I +IESFLK TEE
Sbjct: 188 MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 240

[Close]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL
Match: A0A5A7T9L5 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002620 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45
Identity = 100/113 (88.50%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE ALADLK  L ELEKST+ KGPEFDDARS I +IESFLK TEE
Sbjct: 61  MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: XP_023006149.1 (tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006151.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006152.1 tubulin-folding cofactor A [Cucurbita maxima])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: XP_023548059.1 (tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548061.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLESALADLKGTLDELEKSTQV+GPEFDDARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVRGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: XP_022959143.1 (tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959145.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959146.1 tubulin-folding cofactor A [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLE+ALADLKGTLDELEKSTQVKGPEF+DARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: KAG6574808.1 (Tubulin-folding cofactor A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013391.1 Tubulin-folding cofactor A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.2 bits (539), Expect = 2.3e-51
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLESALADLK TLDELEKSTQVKGPEF+DARSIITEIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKATLDELEKSTQVKGPEFEDARSIITEIESFLKTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. NCBI nr
Match: XP_038907024.1 (tubulin-folding cofactor A [Benincasa hispida])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 105/113 (92.92%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVE EAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEIEAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 114
           MVPDCHKRLESAL DLKG L ELEKSTQ KGPEF+DARS ITEIESFL+TTEE
Sbjct: 61  MVPDCHKRLESALVDLKGALAELEKSTQEKGPEFNDARSTITEIESFLQTTEE 113

[Close]

BLAST of CmaCh17G000510 vs. TAIR 10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-42
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDCHKRLESALADLK TL ELE++ + +GPE +DA+  + ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of CmaCh17G000510 vs. TAIR 10
Match: AT2G30410.2 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-42
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTE 113
           M+PDCHKRLESALADLK TL ELE++ + +GPE +DA+  + ++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

The following BLAST results are available for this feature:

BLAST of CmaCh17G000510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04350	4.9e-41	73.21	Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2	[more]
P80585	3.3e-13	43.14	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2	[more]
O75347	3.3e-13	40.20	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3	[more]
Q6PEC1	5.7e-13	40.20	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1	[more]
P48428	1.7e-12	39.22	Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3	[more]

BLAST of CmaCh17G000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KV46	7.6e-53	100.00	Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV...	[more]
A0A6J1H416	4.9e-52	98.23	Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 ...	[more]
A0A6J1DQ83	6.3e-47	88.50	Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3...	[more]
A0A5D3DLX2	7.6e-45	88.50	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T9L5	7.6e-45	88.50	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CmaCh17G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006149.1	1.6e-52	100.00	tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding co...	[more]
XP_023548059.1	3.5e-52	99.12	tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-...	[more]
XP_022959143.1	1.0e-51	98.23	tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding ...	[more]
KAG6574808.1	2.3e-51	98.23	Tubulin-folding cofactor A, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_038907024.1	2.6e-47	92.92	tubulin-folding cofactor A [Benincasa hispida]	[more]

BLAST of CmaCh17G000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30410.1	3.5e-42	73.21	tubulin folding cofactor A (KIESEL)	[more]
AT2G30410.2	3.5e-42	73.21	tubulin folding cofactor A (KIESEL)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..41
None	No IPR available	COILS	Coil	Coil	coord: 66..86
None	No IPR available	GENE3D	1.20.58.90		coord: 1..113 e-value: 4.8E-41 score: 141.5
None	No IPR available	PANTHER	PTHR21500:SF4	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 7..86 e-value: 1.1E-27 score: 96.1
IPR004226	Tubulin binding cofactor A	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR036126	Tubulin binding cofactor A superfamily	SUPERFAMILY	46988	Tubulin chaperone cofactor A	coord: 3..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000510.1	CmaCh17G000510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0048487	beta-tubulin binding