CmaCh17G000240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Phosphorylated adapter RNA export protein
Location	Cma_Chr17: 103916 .. 107190 (+)
RNA-Seq Expression	CmaCh17G000240
Synteny	CmaCh17G000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATACTATTTATTCTCCCTCCCACTCCATCTGCAGTTCAGCGCCCTTTTATCCCGTTTTTCCTTCTTCACCAATCTTCGTACCCTCTTCTCTACTACAACCACAACCCACGCCGGAACGCCATCTCCGCCGCAGTCGCATCCCCTCTCCTTCCGTTCCTCTCTTTCGATATACCCTCTAGATTTCCGGTTAAAGCTTCATCGCCCACTCTATTACTTTCTTTCTCCACTCTCTGGGTAAGTTGTAAATTTAAATTTCGATTGCATTTGATCCGCACCCATTTCAATTTTAAGTTCTTTTTCTCCTGTTCTTCTATGGTTTGTACTAAGATGCCTGAATTTTATTTTTGTATGCCACTCACCCTTCAAGTTCAATTAATTAGTGGGAGGTTGTTGAGTGAAATTCGCTCTGTGTTGTTTTAAATTTACATTTCTGGTTCTTCTATTGAAGCTATGGTTGGTCAGGATATGAATTGTTGCACTTCTTTTTTGGATGAAATATTTACAAGTTTTAGAGTTGTTGTTTGTATGTTCTAGTGTTTATAGTTTCAATATTGGGTTAGTGCCATTCTTTTGAGCAATGAATTTCTGCCATCTAAGGGAGCCTTCCTCCGATGGAAATTTCCAAAGCCTTTTTAGAGTGGAGAGCCAAATTCTTATTTACATTAAGGGAAGAGGTTGACTTTGCTCCAAGGAACAAAATGGGAGCCACCATTTTTCACAGCTTACCTCGCGAAAGAAGTTCCTTATGATTCTTTCAACATTGTTGACAATGACGACCAGTTACCATCTTGATGCCTCTTTCGCCTTGGGGTAGGCACAGATTGTTGGAGAAAAAAGAAAAAGAAGTGTTGTCATCCAATTTTGGCATTTTACATTTGAGTAGTTTTAATCTCATTGAACTCCCAAAAGCTATTTAAGTGTTGATTACATTTTCGTTTTGCATATCCTGCTAATTACAAGTTGCAGTTTATATGTGTTCCCTGAAACCATCTCTAGGATGTCTGATTATTTTCTGAAAATCTTTGTTTCTCTGAATTAAGGCGTCTTATGGATGGACAAGAGAACATACTTGAGGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGAGAGCTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAGAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATACGAGTCAGGTTCAAATGGCACTGATATTAACAGGTGAAGTGAAATTTTCTAATCATGTTGTATGCATTACACTGCACTTTCTTTAGAGTTTGTTTTTGGGGAATCCATATTAGTTTTGTGAAGCAAATAAGGATAGATTAATAGATTGATTAGTAGCCATTAAGAAATAGCAATTTTTTCCCTGACTTCTATATTATGCTGATTTTTGTTTCTTTCAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATATATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAATTTATCAAAGAGGTAATTATTATCTTTTTTGAACCTGATAGAAGAATACTTTTTTTGCTTGAGTGATGAAAATTTATGAATAATCCATCATTGTTAGTTTGAAAACTTTTCTTCTGGTTTTCTATGTTTTGTTTGGAAATGAACCGAATTGACAAACCCTATCTAACCAAACCACGTCAACAAGTTTTTGACTGGGCTGCCTAATTATGGCCATCCAGTCTCGACTCCAGTAAGTATCATACCGCATAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCTGAAGCTATTTGCTCCTTTTAAACCTTGTTCTCTGAGCTGTGAACCATCTTGGCTGGACTACTGCATCTGTGCTATATAAGTTGATGTTGTTTTCCCAGCATTTTTTGGTTATGATCTCTGTAAGATATTTGTACTTTATACAGAAACTTTAGCATTATCACAATTCACAATCCCTCTTTTCCATCCACTTCCCTGAAACCACTACTCCACCTGATTATTCTTACTGATCTAGGCTTTGTTGAAATGTGCTGGGAAGTTTTTAACAACACGTACTTTTTAACAAGTTTTTAACTAAAATATGCAGCTCAGTTGTGCATGTCCTATCATATTTTTGATCTTAGGGTTTGAGATTTGCTTTCATATGTGGGCTCTTGAAAATCTGTTTTCACTTCTAAAAAATTATAACCATTTATTGCCTTGTTTTGCCCTTTTGAGTTACTGATGTTGCTTCACTAATCTGTGGTTGATTTTTCTTGTAATTGTTTTAGCACTTCCCTTCCTACGATATGACACCATATGTTCTATGTTCTATTTATACAAGTTGACATGTTGGAACTCCAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGGTATTTAACAAAACCTTTTTGACATCGTGGTGTATTCCATGTTCTTTCCAATTGAATGTGCAACTCTTATTTTGGTCGCATAGAAAAATACTATCAATGTTCCTAGAGGAGACTCTTAAAGGATTTTTAATTGTCATGGCAAACGTTTCATCTTTCTGAATCTTTCATCTTATTCAGAGTGGCCTTAGTTCGCTAGGGAGCCTATATCTAATGACATTTCTCAAATTGTTGAGCTCATTTACTATCTGTTTTTCTTTCTTAGTTTCTTTGTTCTTGAAATTCATGCTTATGTTAGAATATGTCAAAATCCAATTTCTTCTGATGATCCTATCCGTGAAGCTAATCCTTCATTGATTATTTCTATTTTGGTAGCATGAATGATAATCATCGCGATCATACGTTTTTTTGTTTATTTCATGATGGAGCAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGAAGTTCTTCACCTGTTCTCACAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCTTTGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAACGATCATCTGTTCTCGAAAGATTAAGAGTACCAGTTTCGTATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAACTTGA

mRNA sequence

AAATACTATTTATTCTCCCTCCCACTCCATCTGCAGTTCAGCGCCCTTTTATCCCGTTTTTCCTTCTTCACCAATCTTCGTACCCTCTTCTCTACTACAACCACAACCCACGCCGGAACGCCATCTCCGCCGCAGTCGCATCCCCTCTCCTTCCGTTCCTCTCTTTCGATATACCCTCTAGATTTCCGGTTAAAGCTTCATCGCCCACTCTATTACTTTCTTTCTCCACTCTCTGGGCGTCTTATGGATGGACAAGAGAACATACTTGAGGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGAGAGCTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAGAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATACGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATATATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAATTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGAAGTTCTTCACCTGTTCTCACAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCTTTGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAACGATCATCTGTTCTCGAAAGATTAAGAGTACCAGTTTCGTATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAACTTGA

Coding sequence (CDS)

AAATACTATTTATTCTCCCTCCCACTCCATCTGCAGTTCAGCGCCCTTTTATCCCGTTTTTCCTTCTTCACCAATCTTCGTACCCTCTTCTCTACTACAACCACAACCCACGCCGGAACGCCATCTCCGCCGCAGTCGCATCCCCTCTCCTTCCGTTCCTCTCTTTCGATATACCCTCTAGATTTCCGGTTAAAGCTTCATCGCCCACTCTATTACTTTCTTTCTCCACTCTCTGGGCGTCTTATGGATGGACAAGAGAACATACTTGAGGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGAGAGCTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAGAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATACGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATATATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAATTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGAAGTTCTTCACCTGTTCTCACAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCTTTGCAGAATCAATCTAAAGAATCAAATTCCGAAGAAAAACGATCATCTGTTCTCGAAAGATTAAGAGTACCAGTTTCGTATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAACTTGA

Protein sequence

KYYLFSLPLHLQFSALLSRFSFFTNLRTLFSTTTTTHAGTPSPPQSHPLSFRSSLSIYPLDFRLKLHRPLYYFLSPLSGRLMDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDDDILRENPKEEDTT

Homology

[Close]

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL
Match: A0A6J1KUZ4 (Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC111498940 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 4.2e-131
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 321
           EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 240

Query: 322 DILRENPKEEDTT 335
           DILRENPKEEDTT
Sbjct: 241 DILRENPKEEDTT 253

[Close]

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL
Match: A0A6J1H592 (Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC111460255 PE=3 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 8.1e-127
Identity = 245/253 (96.84%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYEEDDLENDDVEMVDVEEGE VEGNISTEKSSLTDVQAPSIDH+SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 321
           EIGKASSQ+VLHLFS+GASQDQPDSIQSLTP QNQSKESNSEEKRSSV ERLRVPVSYDD
Sbjct: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 322 DILRENPKEEDTT 335
           DILRENPKEEDT+
Sbjct: 241 DILRENPKEEDTS 253

[Close]

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL
Match: A0A5D3DLH5 (Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00350 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 4.2e-107
Identity = 211/254 (83.07%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDG ENILEAIYE D+ ENDDVEM DVEEGE ++ NI+ EKSS TDVQAPS D RSKNRK
Sbjct: 1   MDGHENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RR+KKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQ-GASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYD 321
           E  K SSQ+V HLFS+ G+S++ PD +QS T   N+SKESNSEEKRSS+ +RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 322 DDILRENPKEEDTT 335
           DD+L+ENPKEEDTT
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL
Match: A0A0A0KBJ7 (Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 5.5e-107
Identity = 210/254 (82.68%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 81  LMDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNR 140
           LMDGQENILEAIYE+D LENDDVEM DVEEGE ++ NI+ EKSS TDVQAPS D RSKNR
Sbjct: 3   LMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNR 62

Query: 141 KRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKE 200
           K R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSE IKE
Sbjct: 63  KHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKE 122

Query: 201 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 260
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 123 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 182

Query: 261 TEIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYD 320
           TE  K SSQ+V HLFS+G+S++ PD +QS +   NQSKESNSEEK SS+ +RLRVPVSYD
Sbjct: 183 TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 242

Query: 321 DDILRENPKEEDTT 335
           DD+L+ENPKEEDTT
Sbjct: 243 DDLLQENPKEEDTT 256

[Close]

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL
Match: A0A1S3CD38 (Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC103499036 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 5.5e-107
Identity = 211/254 (83.07%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYE D+ ENDDVEM DVEEGE ++ NI+ EKSS TDVQAPS D RSKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RR+KKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 262 EIGKASSQEVLHLFSQ-GASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYD 321
           E  K SSQ+V HLFS+ G+S++ PD +QS T   N+SKESNSEEKRSS+ +RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 322 DDILRENPKEEDTT 335
           DD+L+ENPKEEDTT
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CmaCh17G000240 vs. NCBI nr
Match: KAG6574787.1 (hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 540.8 bits (1392), Expect = 8.3e-150
Identity = 285/298 (95.64%), Postives = 289/298 (96.98%), Query Frame = 0


Query: 37  HAGTPSPPQSHPLSFRSSLSIYPLDFRLKLHRPLYYFLSPLSGRLMDGQENILEAIYEED 96
           HAGTPSPPQSHP+S  SSLSI PLDFRLKLHR LYYFLSPLSGRLMDGQENILEAIYEED
Sbjct: 31  HAGTPSPPQSHPISIPSSLSISPLDFRLKLHRLLYYFLSPLSGRLMDGQENILEAIYEED 90

Query: 97  DLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRKRRSKKKKNKRKTYES 156
           DLENDDVEMVDVEEGE VEGNISTEKSSLTDVQAPSIDH+SKNRKRRSKKKKNKRKTYES
Sbjct: 91  DLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRKRRSKKKKNKRKTYES 150

Query: 157 GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEVNAVQACGGQMTADGR 216
           GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEVNAVQACGGQMTADGR
Sbjct: 151 GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGR 210

Query: 217 RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS 276
           RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS
Sbjct: 211 RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS 270

Query: 277 QGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDDDILRENPKEEDTT 335
           +GASQDQPDSIQSLTP QNQSKESN EEKRSSV ERLRVPVSYDDDILRENPKEEDT+
Sbjct: 271 EGASQDQPDSIQSLTPEQNQSKESNFEEKRSSVHERLRVPVSYDDDILRENPKEEDTS 328

[Close]

BLAST of CmaCh17G000240 vs. NCBI nr
Match: KAG7013367.1 (hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 538.9 bits (1387), Expect = 3.1e-149
Identity = 284/298 (95.30%), Postives = 288/298 (96.64%), Query Frame = 0


Query: 37  HAGTPSPPQSHPLSFRSSLSIYPLDFRLKLHRPLYYFLSPLSGRLMDGQENILEAIYEED 96
           HAGTPSPPQSHP+S  SSLSI PLDFRLKLHR LYYFLSPLSG LMDGQENILEAIYEED
Sbjct: 19  HAGTPSPPQSHPISIPSSLSISPLDFRLKLHRLLYYFLSPLSGHLMDGQENILEAIYEED 78

Query: 97  DLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRKRRSKKKKNKRKTYES 156
           DLENDDVEMVDVEEGE VEGNISTEKSSLTDVQAPSIDH+SKNRKRRSKKKKNKRKTYES
Sbjct: 79  DLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRKRRSKKKKNKRKTYES 138

Query: 157 GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEVNAVQACGGQMTADGR 216
           GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEVNAVQACGGQMTADGR
Sbjct: 139 GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGR 198

Query: 217 RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS 276
           RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS
Sbjct: 199 RFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATEIGKASSQEVLHLFS 258

Query: 277 QGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDDDILRENPKEEDTT 335
           +GASQDQPDSIQSLTP QNQSKESN EEKRSSV ERLRVPVSYDDDILRENPKEEDT+
Sbjct: 259 EGASQDQPDSIQSLTPEQNQSKESNFEEKRSSVHERLRVPVSYDDDILRENPKEEDTS 316

[Close]

BLAST of CmaCh17G000240 vs. NCBI nr
Match: XP_023006092.1 (uncharacterized protein LOC111498940 [Cucurbita maxima])

HSP 1 Score: 477.6 bits (1228), Expect = 8.6e-131
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 321
           EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 240

Query: 322 DILRENPKEEDTT 335
           DILRENPKEEDTT
Sbjct: 241 DILRENPKEEDTT 253

[Close]

BLAST of CmaCh17G000240 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 467.2 bits (1201), Expect = 1.2e-127
Identity = 248/253 (98.02%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYEEDDLENDDVEMVDVEEGE VEGNISTEKSSLTDVQAPSIDHRSKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHRSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 321
           EIGKASSQEVLHLFS+GASQDQPDSIQSLTP QNQSKESNSEEKRSSV ERLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 322 DILRENPKEEDTT 335
           DILRENPKEEDTT
Sbjct: 241 DILRENPKEEDTT 253

[Close]

BLAST of CmaCh17G000240 vs. NCBI nr
Match: XP_022959193.1 (uncharacterized protein LOC111460255 [Cucurbita moschata])

HSP 1 Score: 463.4 bits (1191), Expect = 1.7e-126
Identity = 245/253 (96.84%), Postives = 249/253 (98.42%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLENDDVEMVDVEEGELVEGNISTEKSSLTDVQAPSIDHRSKNRK 141
           MDGQENILEAIYEEDDLENDDVEMVDVEEGE VEGNISTEKSSLTDVQAPSIDH+SKNRK
Sbjct: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60

Query: 142 RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSEFIKEV 201
           RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSE IKEV
Sbjct: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 202 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 261
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 262 EIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYDD 321
           EIGKASSQ+VLHLFS+GASQDQPDSIQSLTP QNQSKESNSEEKRSSV ERLRVPVSYDD
Sbjct: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 322 DILRENPKEEDTT 335
           DILRENPKEEDT+
Sbjct: 241 DILRENPKEEDTS 253

[Close]

BLAST of CmaCh17G000240 vs. TAIR 10
Match: AT3G20430.1 (CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-49
Identity = 127/266 (47.74%), Postives = 175/266 (65.79%), Query Frame = 0


Query: 82  MDGQENILEAIYEEDDLEN-DDVEMVDVEEGELV-------------EGNISTEKSSLTD 141
           M+G+E++L+AI EED  EN +DVEMVDVEEGE+V             +G+   +K ++  
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 142 VQAPSIDHRSKNRKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVG 201
            +   +   +KN KR+ KKKK K    +   +   ++ FV D CRRLKEKKSYM+YTAVG
Sbjct: 61  -EKNGLQQTNKN-KRKKKKKKRKGPVMDKPMS---VDWFVRDTCRRLKEKKSYMIYTAVG 120

Query: 202 CLGVSALSEFIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEF 261
           CLG++ALS+ + EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEF
Sbjct: 121 CLGIAALSDLVNEVVAIETCGGQVTADGTRKRTSGGVLWNIIKARQPEAYREIMKKTKEF 180

Query: 262 EKQFKQPNIR-REATEIGKASSQEVLHLFSQGASQDQP-DSIQSLTPLQNQSKESNSEEK 321
           EKQF+QPN R +   +  + SS E   L S   S D+   S   + P+  Q+ ES  E++
Sbjct: 181 EKQFRQPNTRPKSGPKRDQGSSSE--GLASGNVSADEALVSEMCVMPVAEQT-ESKPEKE 240

Query: 322 RSSVLERLRVPVSYDDDILRENPKEE 332
           R SV ER+RVPVSY DD+ R+ P ++
Sbjct: 241 RKSVHERIRVPVSY-DDLFRDAPLDD 257

The following BLAST results are available for this feature:

BLAST of CmaCh17G000240 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KUZ4	4.2e-131	100.00	Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1H592	8.1e-127	96.84	Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5D3DLH5	4.2e-107	83.07	Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KBJ7	5.5e-107	82.68	Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G07...	[more]
A0A1S3CD38	5.5e-107	83.07	Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC10349903...	[more]

BLAST of CmaCh17G000240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574787.1	8.3e-150	95.64	hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7013367.1	3.1e-149	95.30	hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023006092.1	8.6e-131	100.00	uncharacterized protein LOC111498940 [Cucurbita maxima]	[more]
XP_023547831.1	1.2e-127	98.02	uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]	[more]
XP_022959193.1	1.7e-126	96.84	uncharacterized protein LOC111460255 [Cucurbita moschata]	[more]

BLAST of CmaCh17G000240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20430.1	3.9e-49	47.74	CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-bindi...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038092	Phosphorylated adapter RNA export protein, RNA-binding domain superfamily	GENE3D	1.10.10.1440		coord: 158..255 e-value: 1.3E-30 score: 107.3
IPR019385	Phosphorylated adapter RNA export protein, RNA-binding domain	PFAM	PF10258	RNA_GG_bind	coord: 168..246 e-value: 1.1E-22 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..298
IPR039047	Phosphorylated adapter RNA export protein	PANTHER	PTHR13135	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	coord: 73..324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000240.1	CmaCh17G000240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006408	snRNA export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding