CmaCh16G011780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GTPase
Location	Cma_Chr16: 9015392 .. 9018502 (+)
RNA-Seq Expression	CmaCh16G011780
Synteny	CmaCh16G011780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCTTCAAATGCCACAGAACAGAACGAGTTGCAGAGAGAAGCAGAAGAAAGTTCTAGAGAGAGAGTGAAATGGTTCTATGGGAGATCACTCTTGGAACAGCCTATTTCTTGGGGCTCAAGCGAACATATCGCCTCGCCCTCAAGCTTCAACGCCGTATAGTCAGCCCAAAGTTCCCCAAGATCCGTCAGTTTCTTCACCGGTAATTTTAATCTCTATCTTCTTTTGATATTTTGATTCGATGATGATGGAATTTGAGCTGGAAATGCGTTTTTGTATTGTGTTATTTGATGATTCGGCTTTCTTTTCCAATCGCGAGTTCGAATTGAGATAAACCCTGTTTCGGGTTTCGATTTTATCCTTCATTTGATCTGATGAAATGGAGGATTTTCTGTTTTACGAACCAAGAGTTTTTTCTTGCATCAAGAAATTTATGGGAAGGTTGAAGAATCTTTTATTTTGTTGCTCTTTGTAATGAAATTGACAATTGTTATGAAATAAGTTCGGTGCCATTAGCTAGGGTGCAGTAGAGAGGATGGCTCTACGGCCAATTGTTATCAAATTTTGGCATCTTGTTTTCTTTGTTACCAAATCTTCGGTTTAGATAGATATGTAATTTAATTTGCCTTTCAACTTCCTAGGGGATGTTATTGTCAGACAAACACGACTCTCTACAATGGTATGATATTGTCCATTTTGAGTATAAGCTCTCATGGCTTTGCTTTGGGTTTTCCCAAAAGGCCTCATCCCAATGAAGAGAGCTTGATTATAAAACCAGATGTGGGACTTTCATCATCCAACACCTCCCCTCGAACAAAGTACGCCTCCCCTTAATCGAGACTCGACTCCTTTGGAGTCTTAGTCATTTTTTACTATGCTTTCGAGGAGGCTTGATTCTTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATTTATTGGCACGACTAAGTTTAGGGCATGGCTCTGGTACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGTTTCCCCAAAAGACATCATACCAATGGAGAAAGCTTGATTATAAAACCCATGACCATTCCCTAAATTAGTCGATGTGGGACTTTCATCATCCAACAGTTATGATTTGTAATTTGGAGGTTAGGTTGATGGGTTAATCTCTTGGATCATTTTCAAGTGGCATTAATGAGGGGTTCTCTTCTTCCTTTCTCTCATTTTTCACTCTCATGATTGATGATGCATTCCAGCACTTCTATCATCCCTTTCACCTTCCAGCAGCAGTTCATTCTTATAATGAATGCACCAATAGTTCTTAGATCTTATAGTTCTAACATGGAGTGAAAATCCACCCTTTTGAAGCATGATCAGGACATCTTGTCATGGGTGCTATGATTTTTGTTTTAATGCTCATAATTATGAAGCATGGAAGTTTATTCCAAGAATTATGAAGTACCAATATTTTTTTAGATCTTATAATTCTAACATGGGGTGAAAATCCACACTTTTGAAGCATGATCGGAACATTTTTGTCATGGGTTGTGATTATTGTTTTGAGGCTCATAATTATGAAGCGTGTAAGCTTGTTCCAAGAATTATAAAGCATGAAAAGTAATATTCTTTATGGATCATAATGATGGGAACCTCAAGGTATGCCATAACAGTAAGGGCTTAGATACCTTCCGAGGTTTAAAAGCCTTAAAACTATTCTTCTCCGAGCTGACTTTGGGTAGGCAGAATTTAGTGTTAGAAATCATGACTCTTCACAATAGTACGATATTATCCACTTTGAGCTTAACTCTCGTGGCTTTGCTTTTGGTTTCTCTAGAAGGTCTGCAAGATATTATCCTCAACATTTAGCATGGTGAACTACGAACACAATGCAAGATATGCAAGATGTGAGCCTGAACATTCTGATTATAATATAAATAATAATGATGATGTGATGAGTAAAAGCCATGTTCATTGGTCTTTAAGTTGTGTAATTTGTTTCTTGTTACTCTAGTATGAGACGGTAGATTGTCTTGTTGTGTTGGTTTAAAGGTGAACACATAAACGACTGTAATTTAGAACAGTTTTTGGTGCCACTCATTAAGTCATAATGTCCTGGTTTCTTATTGATATGATATTTTCAATAACCATGAATGTGAAATATTCTGCCTGTCGCCATTTCTTCTGCAGACGTACCCGTATCGTATTTGATGTAGCATTAAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTAGGAATCTTGGTAACTGGATTCTACGATTGCTCGACAGATATAAACCATCAGCTCAAATTCGTAAACAAGATGGCGGATCGATCAAAAACACGACCAAGCAGATTTCCAGCTCCCCCGTCTTGAAAAACCCAGAGAGCTCCCAGGTCCTGAAGAAGCCAAAATCTTCTAGACAATTATTTACCTCATCAACAAATATATGGCCTAAGCAATTTCCTACAATTTCCATGACGATGAAGCCTTCAAACCCAGCCACAACTATGATCCAGCATAGACATTTTGGTATTTTGACACCTGAAGTGCCTCGGCCAAGATACGGGAGAGGATGGCATGGCGGGGTCATTAGGGAGGATATAAGGCAATGGATGCTGCAAAACTAGGAACTAAAGTTCACTGTTCTCTTTCATTTTGTTGAGGCTGGAAGGATTCATGTACATGCTACAACAAAGATCATAGGACATCATCATGGCAACTGAGAACAGAAGCTGCACCAATTGAATGCTTAGATTTTCTGGTCTGCTTCTTGGCGCTTGAACATTTGGTGGATAACTGGTTTTCTTTGGTTTCTGCTTACTGTTACGAAAGTTTATTAGCATCAATCCAGAAGAGACTTCGTTAGAGGTTGATTCGCTTTTTGAAACATATATATGCTTTAAAAGTTGTACCCTTTTGTTACCCTTGAAAAGAAAAGTGAAGAATTTTTATTCTCTTAGTCTTCATTACTAGTATCACAAAGGCATCAAGTCGTGGTGTTTGAAGACTTACGAGTCTATGCAAACATGCCAATAATAAGATTCACCTTACGTTATAGGTTACAGGTAAGGC

mRNA sequence

GATTCTTCAAATGCCACAGAACAGAACGAGTTGCAGAGAGAAGCAGAAGAAAGTTCTAGAGAGAGAGTGAAATGGTTCTATGGGAGATCACTCTTGGAACAGCCTATTTCTTGGGGCTCAAGCGAACATATCGCCTCGCCCTCAAGCTTCAACGCCGTATAGTCAGCCCAAAGTTCCCCAAGATCCGTCAGTTTCTTCACCGACGTACCCGTATCGTATTTGATGTAGCATTAAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTAGGAATCTTGGTAACTGGATTCTACGATTGCTCGACAGATATAAACCATCAGCTCAAATTCGTAAACAAGATGGCGGATCGATCAAAAACACGACCAAGCAGATTTCCAGCTCCCCCGTCTTGAAAAACCCAGAGAGCTCCCAGGTCCTGAAGAAGCCAAAATCTTCTAGACAATTATTTACCTCATCAACAAATATATGGCCTAAGCAATTTCCTACAATTTCCATGACGATGAAGCCTTCAAACCCAGCCACAACTATGATCCAGCATAGACATTTTGGTATTTTGACACCTGAAGTGCCTCGGCCAAGATACGGGAGAGGATGGCATGGCGGGGTCATTAGGGAGGATATAAGGCAATGGATGCTGCAAAACTAGGAACTAAAGTTCACTGTTCTCTTTCATTTTGTTGAGGCTGGAAGGATTCATGTACATGCTACAACAAAGATCATAGGACATCATCATGGCAACTGAGAACAGAAGCTGCACCAATTGAATGCTTAGATTTTCTGGTCTGCTTCTTGGCGCTTGAACATTTGGTGGATAACTGGTTTTCTTTGGTTTCTGCTTACTGTTACGAAAGTTTATTAGCATCAATCCAGAAGAGACTTCGTTAGAGGTTGATTCGCTTTTTGAAACATATATATGCTTTAAAAGTTGTACCCTTTTGTTACCCTTGAAAAGAAAAGTGAAGAATTTTTATTCTCTTAGTCTTCATTACTAGTATCACAAAGGCATCAAGTCGTGGTGTTTGAAGACTTACGAGTCTATGCAAACATGCCAATAATAAGATTCACCTTACGTTATAGGTTACAGGTAAGGC

Coding sequence (CDS)

ATGGTTCTATGGGAGATCACTCTTGGAACAGCCTATTTCTTGGGGCTCAAGCGAACATATCGCCTCGCCCTCAAGCTTCAACGCCGTATAGTCAGCCCAAAGTTCCCCAAGATCCGTCAGTTTCTTCACCGACGTACCCGTATCGTATTTGATGTAGCATTAAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTAGGAATCTTGGTAACTGGATTCTACGATTGCTCGACAGATATAAACCATCAGCTCAAATTCGTAAACAAGATGGCGGATCGATCAAAAACACGACCAAGCAGATTTCCAGCTCCCCCGTCTTGAAAAACCCAGAGAGCTCCCAGGTCCTGAAGAAGCCAAAATCTTCTAGACAATTATTTACCTCATCAACAAATATATGGCCTAAGCAATTTCCTACAATTTCCATGACGATGAAGCCTTCAAACCCAGCCACAACTATGATCCAGCATAGACATTTTGGTATTTTGACACCTGAAGTGCCTCGGCCAAGATACGGGAGAGGATGGCATGGCGGGGTCATTAGGGAGGATATAAGGCAATGGATGCTGCAAAACTAG

Protein sequence

MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKFPKIRQFLHRRTRIVFDVALKVHLNIQQRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGGSIKNTTKQISSSPVLKNPESSQVLKKPKSSRQLFTSSTNIWPKQFPTISMTMKPSNPATTMIQHRHFGILTPEVPRPRYGRGWHGGVIREDIRQWMLQN

Homology

[Close]

BLAST of CmaCh16G011780 vs. TAIR 10
Match: AT1G32260.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-49
Identity = 107/201 (53.23%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKFPKIRQFLHRRTRIVFDVALKVHLNI 60
           MV WEITLGTAYFLGL+RTYRLALK+QRR+V+PK PKIRQFLHRRTR +FDVA+ VH NI
Sbjct: 1   MVFWEITLGTAYFLGLRRTYRLALKIQRRLVTPKHPKIRQFLHRRTRKIFDVAISVHKNI 60

Query: 61  QQRDLEVGRNLGNWILRLLDRYKPSAQIRKQ-----DGGSIKNTTKQISS-SPVLKNPES 120
           Q+RD+EVGRNLGNWILR LD+ KP+AQIR +     +  S  +  K+++  S    +  +
Sbjct: 61  QERDIEVGRNLGNWILRWLDKMKPAAQIRTRPELPHNSNSNMDKAKRLTELSRPKSHTNT 120

Query: 121 SQVLKKPKSSRQLFTSSTNIWPKQFPTISMTMKPSNPATTMIQHRHF--GILTPEVPRPR 180
           +Q  +  +S R LFTS  +   K FP++SM ++P  P  T  Q+RH+  G L   + +P 
Sbjct: 121 TQTPQNRESDRHLFTSLKHFRHKPFPSVSMMIQPPRPNGTTTQYRHYYSGGLAASLIQPS 180

Query: 181 Y-GRGWHGGVIREDIRQWMLQ 193
           Y   G   GV+R+DI QWM Q
Sbjct: 181 YVTGGGFNGVVRKDILQWMAQ 201

[Close]

BLAST of CmaCh16G011780 vs. TAIR 10
Match: AT2G35480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast hits to 47 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 102/195 (52.31%), Postives = 129/195 (66.15%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKFPKIRQFLHRRTRIVFDVALKVHLNI 60
           MVLWE+ LGTAYFLG++RTYRLALK QRR+VSPK P+IR F+HRRT  +FD+AL+VH NI
Sbjct: 1   MVLWELALGTAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMALRVHKNI 60

Query: 61  QQRDLEVGRNLGNWILRLLDRYKPSAQI--RKQDGGSIKNTTKQISSSPVLKNPESSQVL 120
           QQRD+ +GRNLGNWILR LDR KPSAQ+   K    SI +  K++  S  LK   ++Q  
Sbjct: 61  QQRDMVIGRNLGNWILRGLDRMKPSAQVLLPKNTEPSI-DKAKRVLQSTRLKPHVNTQTP 120

Query: 121 KKPKSSRQLFTSSTNIWPKQFPTISMTM-KPSNPATTMIQHRHFGILTPEVPRPRYGRGW 180
           +  +  R LF S  N   K +P  SM M KP     T  Q+R + +    + +P Y RG 
Sbjct: 121 QNREVDRNLFMSLRNFRSK-YPIASMMMIKPPRSTGTTTQYRPYSVGESSLIKPIYARGG 180

Query: 181 HGGVIREDIRQWMLQ 193
              VIR+DI QWM+Q
Sbjct: 181 FNSVIRKDILQWMVQ 193

The following BLAST results are available for this feature:

BLAST of CmaCh16G011780 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G011780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32260.1	3.0e-49	53.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35480.1	1.3e-44	52.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..123
None	No IPR available	PANTHER	PTHR35998	FAMILY NOT NAMED	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011780.1	CmaCh16G011780.1	mRNA