Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCTCCAAAACTACTACTCCGGTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGGCCTCCCGATCGCCCAAAGAAAGAAGCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCATAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA mRNA sequence
ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCTCCAAAACTACTACTCCGGTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGGCCTCCCGATCGCCCAAAGAAAGAAGCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCATAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA Coding sequence (CDS)
ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCTCCAAAACTACTACTCCGGTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGGCCTCCCGATCGCCCAAAGAAAGAAGCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCATAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA Protein sequence
MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRALPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK
Homology
BLAST of CmaCh16G011560 vs. TAIR 10
Match:
AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 0
Query: 1 MTLNCLSCQLLQRTDSERDPD------PQLQ-NYYSGQ---IEP-SGRSWSGNLSFRPPD 60 M+LNCLSCQ L RTDS +D D P+++ N G+ + P GR+WSGNLS R + Sbjct: 1 MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60 Query: 61 RPKKEALRALPEDQAPPVAPRRLHSSGPISLG-------SKEPKLVRSSGMRRDWSFEDL 110 + + +L + SGP+ ++PKLVRS+G+RR+WSFE+L Sbjct: 61 KIGRPG-SSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENL 120
BLAST of CmaCh16G011560 vs. TAIR 10
Match:
AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 0
Query: 1 MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRALP 60 M+LNCL+C +LQRTDS+RD + + + S +F R + +LP Sbjct: 1 MSLNCLACHILQRTDSDRDMGSRKDSSFKENFATS--------AFEKMVRNRS----SLP 60 Query: 61 EDQAPPVAPRRLHSSGPISLGS-KEPKLVRSSGMRRDWSFEDLRAIREE 109 + RRL+S+ + G EPKLVRSSG+RRDWSFEDL+ +++ Sbjct: 61 VVRRVNKGHRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
AT5G46770.1 1.5e-10 38.76 unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT2G35215.1 3.4e-10 38.53 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
A T G A C T C T G A A C T G C C T C T C C T G T C A A C T C T T A C A G A G A A C G G A C T C C G A G A G A G A C C C C G A C C C G C A G C T C C A A A A C T A C T A C T C C G G T C A G A T A G A G C C G T C G G G G A G A A G C T G G T C C G G C A A C C T C T C T T T C C G G C C T C C C G A T C G C C C A A A G A A A G A A G C G C T T C G A G C C C T G C C T G A G G A C C A G G C G C C T C C C G T C G C C C C C C G C C G T C T T C A T A G C T C C G G C C C C A T C T C T T T G G G C A G C A A G G A G C C G A A G C T G G T T C G A A G C T C C G G G A T G A G G A G G G A T T G G A G C T T C G A G G A T C T C A G A G C C A T T C G A G A G G A A A A A T A A 50 100 150 200 250 300 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite PTHR36019:SF3 PTHR36019
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 21..42
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 13..93
None No IPR available PANTHER PTHR36019:SF3 PLANT/PROTEIN coord: 1..108
None No IPR available PANTHER PTHR36019 PLANT/PROTEIN coord: 1..108
Relationships
The following mRNA feature(s) are a part of this gene: