Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTACCTCTTGGTTTGGAGAAGAAGCTAAGTATGCTTTGAAGTGGCCGATCTATAAAGCTATGCCAAGGTTCATGATTAGGAACCATATATCTCTCTATCAAACAATCCATTCAAAAACAATACTTTCCTTACGTTTGTAAAGTTGGATTACAACTCTCTCCAAAAACTTTACCAGAAAAAAAAATATCTTTCGAAATGGAATATATACATAGGTGGTGGAAAAATTTGAAGTTGGTGGAGGAATTATGTTTTTCTCGAGATAGAGTGGTAGAGTGCTTTATTTGGGCATTGGGATTACATTATGCACCAAATTACTCCAACATGAGAAGATATGTAGCCAAAATTATTGGTTTGATATTCATGGTTGATGATATGTATGATGCGTATGCTACCTTGGATGAGCTTGAGCTATTCACCAATGCAATCCAAAGGTTTAGCCCTTCCCCTCTTTGTTTAAACTAATCTAATAATGCCTTTTAAATCAATTGCATTGTGTTTTAGGTGGGATGTCAATTGCATTGAGAATCTCCCAAATTACATGAAAGACTTCCCACCTAAAACACAATGCAATTGAATATGCAAAACAAGGATACCATCTTTTTACTTCAATTGCCTTCCTTGCTTTGGGAAATGTTGCTTCAAAACAGGCTGCTCTATGGGATCAACCTGAACCTACGCTTCTTATAGCTTCGGGGGTCATTGGAAGGCTCATGAATGACATAGCTTCCCACAAGATACTCACACACAAATAA
mRNA sequence
ATGAGTTCTACCTCTTGGTTTGGAGAAGAAGCTAAGTATGCTTTGAAGTGGCCGATCTATAAAGCTATGCCAAGGTTCATGATTAGGAACCATATATCTCTCTATCAAACAATCCATTCAAAAACAATACTTTCCTTACTTGGATTACAACTCTCTCCAAAAACTTTACCAGAAAAAAAAATATCTTTCGAAATGGAATATATACATAGGTGGTGGAAAAATTTGAAGTTGGTGGAGGAATTATGTTTTTCTCGAGATAGAGTGGTAGAGTGCTTTATTTGGGCATTGGGATTACATTATGCACCAAATTACTCCAACATGAGAAGATATGTAGCCAAAATTATTGGTTTGATATTCATGGTTGATGATATGTATGATGCGTATGCTACCTTGGATGAGCTTGAGCTATTCACCAATGCAATCCAAAGGTGGGATACTTCCCACCTAAAACACAATGCAATTGAATATGCAAAACAAGGATACCATCTTTTTACTTCAATTGCCTTCCTTGCTTTGGGAAATGTTGCTTCAAAACAGGCTGCTCTATGGGATCAACCTGAACCTACGCTTCTTATAGCTTCGGGGGTCATTGGAAGGCTCATGAATGACATAGCTTCCCACAAGATACTCACACACAAATAA
Coding sequence (CDS)
ATGAGTTCTACCTCTTGGTTTGGAGAAGAAGCTAAGTATGCTTTGAAGTGGCCGATCTATAAAGCTATGCCAAGGTTCATGATTAGGAACCATATATCTCTCTATCAAACAATCCATTCAAAAACAATACTTTCCTTACTTGGATTACAACTCTCTCCAAAAACTTTACCAGAAAAAAAAATATCTTTCGAAATGGAATATATACATAGGTGGTGGAAAAATTTGAAGTTGGTGGAGGAATTATGTTTTTCTCGAGATAGAGTGGTAGAGTGCTTTATTTGGGCATTGGGATTACATTATGCACCAAATTACTCCAACATGAGAAGATATGTAGCCAAAATTATTGGTTTGATATTCATGGTTGATGATATGTATGATGCGTATGCTACCTTGGATGAGCTTGAGCTATTCACCAATGCAATCCAAAGGTGGGATACTTCCCACCTAAAACACAATGCAATTGAATATGCAAAACAAGGATACCATCTTTTTACTTCAATTGCCTTCCTTGCTTTGGGAAATGTTGCTTCAAAACAGGCTGCTCTATGGGATCAACCTGAACCTACGCTTCTTATAGCTTCGGGGGTCATTGGAAGGCTCATGAATGACATAGCTTCCCACAAGATACTCACACACAAATAA
Protein sequence
MSSTSWFGEEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAYATLDELELFTNAIQRWDTSHLKHNAIEYAKQGYHLFTSIAFLALGNVASKQAALWDQPEPTLLIASGVIGRLMNDIASHKILTHK
Homology
BLAST of CmaCh16G010090 vs. ExPASy Swiss-Prot
Match:
F6M8H5 (Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=SesquiTPS PE=3 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 3.9e-31
Identity = 86/266 (32.33%), Postives = 125/266 (46.99%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQ--TIHSKTILSLLGLQLSPKTLPEKKISFEME 68
E+ ++AL P++K +PR +Y+ H+K +L L L + KK E+
Sbjct: 203 EQVRHALYQPLHKGLPRLEAVYFFRIYEAHASHNKALLKLAKLDFNLLQSFHKK---ELS 262
Query: 69 YIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYD 128
I RWWK+L + F+RDR+VE + W LG+++ P YS R+ + K+ +I +DD+YD
Sbjct: 263 DIARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYD 322
Query: 129 AYATLDELELFTNAIQRWDTSHLK----------------HNAIE-------------YA 188
AY TLDELELFT A+QRWD L +N IE YA
Sbjct: 323 AYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEVEMDNQGSLFRMHYA 382
Query: 189 KQ-----------------------------------GYHLFTSIAFLALGNVASKQAAL 209
K+ GY T+I++L +G +ASK+A
Sbjct: 383 KEVMKKLVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFD 442
BLAST of CmaCh16G010090 vs. ExPASy Swiss-Prot
Match:
F6M8H7 (Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 84/266 (31.58%), Postives = 126/266 (47.37%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQ--TIHSKTILSLLGLQLSPKTLPEKKISFEME 68
E+ ++AL P+++ +PR +Y+ H+K +L L L + KK E+
Sbjct: 203 EQVRHALYQPLHRGLPRLEAVYFFRIYEAHASHNKALLKLAKLDFNLLQSFHKK---ELS 262
Query: 69 YIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYD 128
I RWWK+L + F+RDR+VE + W LG+++ P YS R+ + K+ +I +DD+YD
Sbjct: 263 DIARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYD 322
Query: 129 AYATLDELELFTNAIQRWDTSHLK----------------HNAIE-------------YA 188
AY TLDEL+LFT A+QRWD L +N IE YA
Sbjct: 323 AYGTLDELKLFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMANQGSLFRMHYA 382
Query: 189 KQ-----------------------------------GYHLFTSIAFLALGNVASKQAAL 209
K+ GY T+I++L +G +ASK+A
Sbjct: 383 KEVMKTIVEGYMDEAKWCHEKYVPTFQEYMSVALVTSGYTFLTTISYLGMGEIASKEAFD 442
BLAST of CmaCh16G010090 vs. ExPASy Swiss-Prot
Match:
F6M8H4 (Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 83/266 (31.20%), Postives = 127/266 (47.74%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQ--TIHSKTILSLLGLQLSPKTLPEKKISFEME 68
E+ ++AL P++K +PR +Y+ H+K +L L L + KK E+
Sbjct: 200 EQVRHALYQPLHKGLPRLEAVYFFRIYEAHASHNKALLKLAKLDFNLLQSFHKK---ELS 259
Query: 69 YIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYD 128
I RWWK+L ++ F+RDR+VE + W LG+++ P YS R+ + K+ +I +DD+YD
Sbjct: 260 DIARWWKSLDFATKVPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYD 319
Query: 129 AYATLDELELFTNAIQRWDTSHLK----------------HNAIE-------------YA 188
AY T+DEL+LFT AI+RWD L +N IE YA
Sbjct: 320 AYGTVDELKLFTEAIRRWDVGSLDQLPEYMKPCYKSILEVYNEIEEEMDNQGSLFRMHYA 379
Query: 189 KQ-----------------------------------GYHLFTSIAFLALGNVASKQAAL 209
K+ GY T++++L +G +ASK+A
Sbjct: 380 KEVMKKLVEGYMDEAKWCHEKYVPTFEEYMSVALVTSGYTFLTTMSYLGMGEIASKEAFD 439
BLAST of CmaCh16G010090 vs. ExPASy Swiss-Prot
Match:
Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 81/272 (29.78%), Postives = 131/272 (48.16%), Query Frame = 0
Query: 3 STSWFGEEAKYALKWPIYKAMPRFMIRNHISLYQT--IHSKTILSLLGLQLSPKTLPEKK 62
S++ E+ +ALK PI K +PR R++ S+YQ H+K +L L L + L +K
Sbjct: 192 SSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLAKLDFN---LLQKL 251
Query: 63 ISFEMEYIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFM 122
E+ I WWK+L +L F+RDRVVEC+ W LG+++ P + RR + K+I + +
Sbjct: 252 HQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSI 311
Query: 123 VDDMYDAYATLDELELFTNAIQRWDTSHLK----------------HNAIE--------- 182
+DD+YD Y TL+ELELFT A++RWD S + ++ IE
Sbjct: 312 IDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRS 371
Query: 183 ----YAKQ-----------------------------------GYHLFTSIAFLALGNVA 209
YAK+ Y + + +F+ +G+
Sbjct: 372 YRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAV 431
BLAST of CmaCh16G010090 vs. ExPASy Swiss-Prot
Match:
Q43714 ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum OX=29729 GN=CAD1-A PE=2 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 81/266 (30.45%), Postives = 124/266 (46.62%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTI--HSKTILSLLGLQLSPKTLPEKKISFEME 68
E+ +ALK I + +PR RN IS+YQ + H+K++L + + L +K E+
Sbjct: 196 EQVGHALKQSIRRGLPRVEARNFISIYQDLESHNKSLLQFAKIDFNLLQLLHRK---ELS 255
Query: 69 YIHRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYD 128
I RWWK+L +L F+RDRVVE + W +G+++ P YS R+ + K+I + +VDD YD
Sbjct: 256 EICRWWKDLDFTRKLPFARDRVVEGYFWIMGVYFEPQYSLGRKMLTKVIAMASIVDDTYD 315
Query: 129 AYATLDELELFTNAIQRWDTSHL-----------------------------KHNAIEYA 188
+YAT DEL +TNAI+RWD + + +EYA
Sbjct: 316 SYATYDELIPYTNAIERWDIKCMNQLPNYMKISYKALLNVYEEMEQLLANQGRQYRVEYA 375
Query: 189 KQ-----------------------------------GYHLFTSIAFLALGNVASKQAAL 209
K+ GY + AF+ +G V + +
Sbjct: 376 KKAMIRLVQAYLLEAKWTHQNYKPTFEEFRDNALPTSGYAMLAITAFVGMGEVITPETFK 435
BLAST of CmaCh16G010090 vs. TAIR 10
Match:
AT4G16730.1 (terpene synthase 02 )
HSP 1 Score: 104.8 bits (260), Expect = 9.0e-23
Identity = 50/142 (35.21%), Postives = 83/142 (58.45%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYI 68
E K AL+ P + ++ R R +I++Y+ H L LL + + E++ I
Sbjct: 177 EMVKRALETPYHWSIRRLEARWYINVYEKKHEMNPL-LLEFAAIDFNMLQANHQEELKLI 236
Query: 69 HRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAY 128
WW + L+++L F RDR+ E + W +G+ Y P + R+ + KI LI ++DD+YD Y
Sbjct: 237 SSWWNSTGLMKQLDFVRDRITESYFWTIGIFYEPEFKYCRKILTKIFMLIVIMDDIYDIY 296
Query: 129 ATLDELELFTNAIQRWDTSHLK 151
TL+ELELFTN +++WD +H++
Sbjct: 297 GTLEELELFTNVVEKWDVNHVE 317
BLAST of CmaCh16G010090 vs. TAIR 10
Match:
AT3G25820.1 (terpene synthase-like sequence-1,8-cineole )
HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYI 68
E+A +AL+ P + M R R +I Y+ H ++ L+ + + +++Y+
Sbjct: 230 EKAYHALEMPYHWRMRRLDTRWYIDAYEKKHDMNLV-LIEFAKIDFNIVQAAHQEDLKYV 289
Query: 69 HRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAY 128
RWWK+ L +L F RDR+VE + W +GL Y P + +RR + + L+ +DD+YD Y
Sbjct: 290 SRWWKDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIY 349
Query: 129 ATLDELELFTNAIQRWDTSHL 150
TL+ELELFT+ ++ WD + L
Sbjct: 350 GTLEELELFTSMVENWDVNRL 369
BLAST of CmaCh16G010090 vs. TAIR 10
Match:
AT3G25830.1 (terpene synthase-like sequence-1,8-cineole )
HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYI 68
E+A +AL+ P + M R R +I Y+ H ++ L+ + + +++Y+
Sbjct: 230 EKAYHALEMPYHWRMRRLDTRWYIDAYEKKHDMNLV-LIEFAKIDFNIVQAAHQEDLKYV 289
Query: 69 HRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAY 128
RWWK+ L +L F RDR+VE + W +GL Y P + +RR + + L+ +DD+YD Y
Sbjct: 290 SRWWKDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIY 349
Query: 129 ATLDELELFTNAIQRWDTSHL 150
TL+ELELFT+ ++ WD + L
Sbjct: 350 GTLEELELFTSMVENWDVNRL 369
BLAST of CmaCh16G010090 vs. TAIR 10
Match:
AT3G25820.2 (terpene synthase-like sequence-1,8-cineole )
HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYI 68
E+A +AL+ P + M R R +I Y+ H ++ L+ + + +++Y+
Sbjct: 230 EKAYHALEMPYHWRMRRLDTRWYIDAYEKKHDMNLV-LIEFAKIDFNIVQAAHQEDLKYV 289
Query: 69 HRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAY 128
RWWK+ L +L F RDR+VE + W +GL Y P + +RR + + L+ +DD+YD Y
Sbjct: 290 SRWWKDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIY 349
Query: 129 ATLDELELFTNAIQRWDTSHL 150
TL+ELELFT+ ++ WD + L
Sbjct: 350 GTLEELELFTSMVENWDVNRL 369
BLAST of CmaCh16G010090 vs. TAIR 10
Match:
AT3G25810.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )
HSP 1 Score: 95.5 bits (236), Expect = 5.4e-20
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 0
Query: 9 EEAKYALKWPIYKAMPRFMIRNHISLYQTIHSKTILSLLGLQLSPKTLPEKKISFEMEYI 68
E A +AL+ P + M R R +I Y+ H L L + + +++Y+
Sbjct: 232 EMAIHALEIPYHWRMRRLETRWYIDAYEKKHDMN-LFLAEFAKIDFNIVQTAHQEDVKYV 291
Query: 69 HRWWKNLKLVEELCFSRDRVVECFIWALGLHYAPNYSNMRRYVAKIIGLIFMVDDMYDAY 128
WWK L +L F RDR+VE + W +G+ Y P + +RR VA + LI ++DD+YD Y
Sbjct: 292 SCWWKETGLGSQLHFVRDRIVENYFWTVGMIYEPQFGYIRRIVAIVAALITVIDDIYDIY 351
Query: 129 ATLDELELFTNAIQRWDTSHL 150
T +ELELFT +Q WD + L
Sbjct: 352 GTPEELELFTAMVQNWDINRL 371
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
F6M8H5 | 3.9e-31 | 32.33 | Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=Sesqu... | [more] |
F6M8H7 | 1.5e-30 | 31.58 | Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV... | [more] |
F6M8H4 | 3.3e-30 | 31.20 | Probable sesquiterpene synthase OS=Santalum album OX=35974 GN=SesquiTPS1 PE=3 SV... | [more] |
Q6Q3H3 | 3.3e-30 | 29.78 | (-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S... | [more] |
Q43714 | 1.3e-29 | 30.45 | (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum OX=29729 GN=CAD1-A P... | [more] |