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CmaCh16G009940 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGAGTGGCGAAACAAAGGGAATTTATATTTGACCGCCTCTTCCTGCCTTTATCTCCATGAATTCTCGCCAGGAGCTCGCCGCCATCTCCCTTCAAACGAGGCCTTCTGCTGCCTAACCACCTTCTTCTCTCTCTTGAAAGCTTTTGGCGTTACGGATTTTCGCTACTTTGTAGGGACGAATCGGGTTGGTCATCGGGCCTGTCGTATCTTCAAGGTTCGGTTCCTGTAATTTCTGTTCTGCTTCTTTGTATTGATAGTTTCCCGTTGTTCTACATTGAAAAATTATGTTGTAAGTTCTCGTGGTATAGCCAATTCTTCTCCTGTGCTTCGCATTATTGTTGAATTGGAGAGGTTATTCTTGCTTTTGTGTTGGTATTTTGGAATCGATTGAAGTGCGTTTCTATGTGAATTTAGAGTTATTGCTTGAATGCTAGAATTTCCGTGTGACCTAAGGGTTCTGATTACTTGAAGGCGCTTCTGCTTTTATTTCCGTGTGACCTAAGGGATTTCTTGGTATGGAGAATACTTTAGGGCAAGGAGAGGGGATGAGGGAGCCATCACTATCTCTCTCCCTTTTTCTTCTCCCTCTGAAGTCTTTATCTCCATCTGGACTCCTCGGTGGAAGTGTCATACTCTTTTTGAGGCTTTTTTAGGTGTAAATAATTTATGTACGACGAAGATTATAAAAAAAAAACAATGACAATTTTAAGAAATTAGAGTTTGTGTTAGAAATCGCGTTTTTGGTGTTCATTTGATGTCAAATTAGTTAATATTATAAAAAGAAGTTAAAAGAGATAAAAGGACACCAAGTGAAACTAGACTTCGGTTTGATGTATAGAATATTTAAAAAAAAACCTTTTTGGTCTCGAATAGATTTTGATTGGCTTCAAGTTCAAGATAACTGAATTAGACCAATAAAACAGTGGCATTCTTGATCATCTTTATATTTCTGTTTTAAAGTTCATGAAACCCACGAAGTCAATAGAAACTAGAAAGGCGCATGTTAAGAGTTTACTTGGCATGTATGGGGGTTACCTTGTTATGTAAATTCATAGAAACATTCATATCTTGTGATTTTGAAGAATGTAATGTAAGGAGTATTTAATTTATGTTGGGGTATGTCTTGTTAAGTTAGTTTTTCTCTTTCACTCAATCTGGACTGGACATAAACAAGTTCTTCCCTTTTTTTCTTTAGCTTTGGTTCAATTGTGGAGATGCTTGCCAGTAAGGTGGCCAAATAGTTTTGATTTTTTTACTGAAAATTACTTGAATTTAGGAGAATGTGGATCAAATATACTGTCTCTGACTATCTTTTAGACTTACCTCTTGTGATCTTTTACCATGTTCTTTTAGTTGTTTTCTTTATCAGTAGATGAGTTCCTCGTTCTCTCTTGACATGACACCTCAAAACTGAACTGGTTGATTCGTTCCATTCAACTGGTTCCGTTTGGACTTGAAAAATTAAGGACACATGAATTGGGTTGGTTGGTGGTTCAAAATAAATTATATCAACCAAAGAAAACTGAACCGAACCAATTATAATATAATTATGCAATATAATTCATATAAGAATGTGAAGAATTTTATTTTTTGCAAGATATAATTCTTCTCAAAATACTCTCAATTGAATATTTTAAATTATTAAAAAAAATCGTCAATCAAAAATCTGTTTATCTGTCTTATATTAACAGACCNNNCCCCCCCCCCCCCCCCCCTGTCGTTGTTGCTTTCTCTCCTCCCACCCTTCCAGCCTCCCACAAAATCCTCTTTTGAATCCATTCTAAAATCATCCTCTTAAATCCCTTTTGGTTTCTGCTGTCGCACCATCATTGTTACTGGCCTCCACACTTTGCCTCTAACTATAAGGTAAGTAACCCTTTCTCTCTTCCTTGATCGTTGCCCTTGCTTTTCAAAAGGGAAAATTGATAAATTGATCGTTTAATTCTTTTCAATCTGTTTTGGGCAGAAGCTTTGTTTTTTTATTTAATGGAGCTTTTCTGGTATAGAATGTAGGTCTGGGAGGCTTGTTGTTCGATGAGATTGATCGGTGTCGAATATGAAGTGTTTTGTCTTGGATAAGAAATAGGGTACCTTTATAAAATAAAAACCTCACATAACAACCTAAAAGCCATAATGAGAGGCGTTTCTACACTGTCTAATAAATTAATATACAGAATAAATTCCTAAGGTACTAGAGAATCCAATCCTAGCGAGCACTCAAGGACTGCTCACTTGCAAAATGTGTACTACTTTACAATCACATTTCATTTGAAGCTCATTATGGAATGAGGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTATTGCATTTGAGATCATAACTATTTCAGTTAACAATAGGAGCGAGAACTAATGAGGATAATAGCTTAAGGCTATGGTTTTGGCCTTTGGAAGTTTTGTGATAGTGTAGAACATTCCACCTCATGGTGATGTTGTTAATGTTTGGAAGGCTCTTATTTTGCAGTCCTTTCCGGGTAGGGTTTCCTCTACCCCTCCCCTCCCGAGAATGGGAGGTTTCTGTGACAAGCTAGGTGGTATAGTTTTGTGAGGCCTTTGGCATGAGAGGAACCATATAACATTTAGAGGATTTGAGATGACTTCAGTCATGTTTGGTTCTTTGTAATGTTCCATGTTTCTCTTACACTTCAGTAGCCAAGTCTTTTGTAGTTATCCTTTAGGTCTTATTTCAATTTGAGCTCCTTTTTTCGTGGGATTTGTTTTTGTATGACTTGGTATTCTTTCATTATTTTCTCAAGGGAAGTTCTATTATTCATAGAAAAACAAAAGAGTTTTGGTGATACAAAAAAGGGACTAAAGTGAGTTATACGACAAACAATCATCAATACCATCAACAAGTCAGAATAACTTAACACTGTAAATGCCTTTCTTTTTCTTTTAGGTCAGTGAGGTCTGTGATGTCTGTGAGTATATGGGTCAAGATGATTTAGCATCGTAAGTACCTTTTAGGGATTCTCGTTTCAATCCAGGATTTAAAGATTTGAAACTAGATATTAGGTGCCTGAACAACCTTCATGGCCTTTTTCTCTATATTATATAAAATCACAACAAATAAGAGGGGATAGATCAAATCATCTGAACATATGCCAAAATCAACCTAATGACTAATCAAATAAGATTTACCTACTGTTCATATCTACTGTATTGCTTCTCAAACTCCTCCTTATGTCTGCAGTCGGCCAAATCAGGGCTTCATTGTATTCAATTATCTCCCTTTATTTTCTCCAAAGTATTCGGTTGAGTCACCTTTTTTTAGGGTCCATGCTTGTCAAAGCCACCCTACAGGGTTTCTAGGTTGCTTTTGGAAAGAATTTCCTGTTTTGGAAAAGTATCCCAAAGATCCTCCAGCTCTTACAACAATTTCTGGGTTCGAATTCTAGCCTGCGGCTTCTGACACCAGCTCTAGAGTTTAGGGATTTGATTACTATCTTATACTTTTCATTCATATAGTGGTAATCTTATAAAACAGATCATTATTATCCACTTTTCTCATATAGCTTCTTCTTATTCTTCCTTTTTTTTTTTTGCTGTTACTATTTTTATTTTATAGGAGGCAATTTCATTTATGTTTGAAATTTACAAAACCTTGTTATTTTATGTTCTGTTCGGATAAACTTCCTTAACTGTGCATTGCATAGGGTTCGGATAAACATTTTTTTATTTTTTTTTATTTTTAATGTTGAGTTATGATTTTATTCTTATATTCACATTCTTAATTACATAACATGCAGTCTTTTAGGTTGCAACTTGTAGTAATTAGGAAATTCAATTTATTCTCATTTTATTGGCGCTTTCATCTCAGAAATTCTTGTTTACAGTGTCAGGTTGTCATCTACCCTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGGTACAAGCAACTAATTTTCTTATTGTTTCTTTGATTTGATGCAAGTGGAAATGAATGGATTTAATTATAATAAAAAAAAGACAAGTACAGGAGAAGGGAAGCAGGATATGGCATTTACCTTACCTCAGAAAGGAACACGTAAGAAATAAGAAGCAACCCATATCTAATTTGATTGGAGAAGTAAGTTAATGTTAGCATTCCTACCATTCACTCCAGCATGAGGTACTGTACTGTATAACATCCAAGAAATTGTCAAAAGTTTTAAAGATATCTTTAAGGGATTCCATTGTTCCTTTCAATCTAAAATTAGCCATTTCATAAAAATAAAAATAAAAAATAAAAAATAAAAAATAAAAAATTAATAATTAGCCATAAAACAGCTTTAGAAGGAATTCCATGTAGAAATCGTCCTTTCTTTTCAGTCACCAATGCACAAACTTCTGAAAATCAGGGATCTCATTCTTCAGGAAGCTCTAAGAATGCCAAATTTGACATGATGAAAATTCCACCTTTATTGGACACTCAGTAGAGGAATAGATGGTCTATATTGGGAAAAGTTGACTTTTGTGTGGGCCTCTTCCTAATCAGGTTAGCTATGTTGGTAACTGAGGTTAGGGTTTTTGTTAGTTAGGTAGAAAAAGCAGACTTCCAAGAATATGTCCCCAAATTATCAAAATGCCAAATGAAAAGAGATGTTATATGCTCTCTCATACTAATATCTATCATGGTTTATTAAGTTTGGGAACAAATAATTTAGCTGGTATAGATCCACTCAAGCAATCTGATTGTCGAGATAACATTTCCTTGCAGTGTGTACATATGAATGGTGTATATATATCTCTATATATTCTTGAAAGTAATAGATAACTGTTGTAGAAATAATCGTTCCTGGTACAGCTGTGAAAGGTCACAGCTTTTCACGGTTTTGTGGTCTCAATATTTTGTCAGCTGATGCTGGTTGGGAATTTATTGATGGACCATAACATCTTGCTCATTCTTTGGAATGTATATTTACTTACACTCGGTTGATTGGAGCAGTCGATTTTCATGGCTGCTAATTGTGATAAACTATGATTTATCAAATGCCTCTATCTTCGTAACATAATATATATCCTTTTCTTGTGGTTTTATGTTGTCCTTCATGCTTTAAGTTTTAATATATTTCTTCCCAGACTAAAAAATGGAACTAATTAGCTTATATTATCTTTTGTATTGGAATACCGTTGTAGTTACATTGATTTCTTTTCAGTTGAAAAATATTGGTTTCTTGCTTAAATTAGTGTTATATTACCATTAATTTGAGATTTCTTTGATCTTTAGTTGTAATATTGTCTTTGTAAAATAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGGTAATTTGGTTCTTATTAATTTGTTTGTCTTTTAATGCTTCCTTATTTCAACTGTTCTCTGTTTACTTCAAAGCCCTGCTGGTAGTAATTGTTCTATATCAAAAACATTACTGTACAATCCTAAGCCTTAGATGCCAAGGTAGAGTTTTAAAAGTCTTCCGAATCCGAATTTTTAGTGGGGTGAATTTGTGATAGGTTTAATTAATACCTTGATTTGGGTCTCTATGGCTAATCCCTTTTGTAGTATCAGTTATGTCTTATTCTTTTATGCCTTATTATTTTGGATGAGAGCCCCTTTTGTACTTCCTTGGGAACTGTTTTTTTATATGCCCATATAAGCTTTCAGATTTCTCATTAAAAGCTTGGTTACTTGTAGTAAAAGAGAATGTTTAATGAGAAATAGTTGAAGCCACATTTTTTTTTTTCATTTACCCAATCAATTAGTTTCTGGGTGGTGGATTTTCAAATGGATTTGAGTTTTTTGTTAAATAATCAATAGCAAAGAACAAAATCGAGTTTTAAGCGTAGTGAAAGACTTAAACACAATATTTGTAGGGGTTTATATGTGTGTATATATATATATCTAATGACGCTGTCTCTCTGCAGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGTAACAATCACTTGCAAATTTTATGAATAATAGTAACTTTAAACTTCAAACTTCCTAGCAGCAAGTAGCATATGCACATGTTATCGCCTTGCAACCCGAACATCATGTATTCATCTAGCAGCATGTTGTTTCCCTAAAATTGCTTACATAAGAACATTGTGTTACCTCCCCCAACTCTTTGCATATGCACATGTTATCGCCTAGCATCAAGTAGCATATGCACATGTTCTTATGTATTCTTCTCTCCCTAACACGCACGGGATTGTCCTATGTTATCATAACGTTGCTGTTGCTAAGCCTTATTTTTAGCTATACATTGTGTTACCTAAAACTAAAAATGCAGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAAATATATTTTGATCAAATTTATAAAATGTAGATTCAGAGTTATACTTGGAGACAATCTCAAAATAAACATTTGTTTCTAGTAATGTTAATCCAATTTGATTTCTTTCATCCACTTTGTTGAAGATATTACCAAGTCAATATAGTGATTCTTCCTCTCACCCTCTCTCCCCTTCTATCCCCACTTCGTCCCTACATGCCACAAAGAATGCTACCTTTAAAGCCATCG CGGAGTGGCGAAACAAAGGGAATTTATATTTGACCGCCTCTTCCTGCCTTTATCTCCATGAATTCTCGCCAGGAGCTCGCCGCCATCTCCCTTCAAACGAGGCCTTCTGCTGCCTAACCACCTTCTTCTCTCTCTTGAAAGCTTTTGGCGTTACGGATTTTCGCTACTTTGTAGGGACGAATCGGGTTGGTCATCGGGCCTGTCGTATCTTCAAGTGTCAGGTTGTCATCTACCCTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAAATATATTTTGATCAAATTTATAAAATGTAGATTCAGAGTTATACTTGGAGACAATCTCAAAATAAACATTTGTTTCTAGTAATGTTAATCCAATTTGATTTCTTTCATCCACTTTGTTGAAGATATTACCAAGTCAATATAGTGATTCTTCCTCTCACCCTCTCTCCCCTTCTATCCCCACTTCGTCCCTACATGCCACAAAGAATGCTACCTTTAAAGCCATCG ATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAA MEMLTTNSGAMLTLLPPVGQHWGKMKVKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR Homology
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 5.0e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08 Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 8.5e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 8.5e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 ) HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32 Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 ) HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32 Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24 Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24 Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24 Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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