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CmaCh16G009360 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGAGGTAAAAAATCCTATCATGAGAGGTAAAAAATCCTATCACTGATTGCCACTAACATAAAATGGTATATATATTCAAATTTTATAGTAAATCAAAAAGTGCAGATGAAAGACGTTAGATATGAAGGCATAAGGGGGAATTCAACATCCCAAGCGGCAGTAAGTTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGAAATTAACCTCTCCTTCAAAGGTGATGGCCAACCAACCTCCATTTGTCATAATGTGAAGGTCTCTGCATTTGGCAAACAACTTCCTTCCTCTTGCCTTTAA ATGAAGGAGGTAAAAAATCCTATCATGAGAGTAAATCAAAAAGTGCAGATGAAAGACGTTAGATATGAAGGCATAAGGGGGAATTCAACATCCCAAGCGGCAGTAAGTTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGAAATTAACCTCTCCTTCAAAGGTGATGGCCAACCAACCTCCATTTGTCATAATGTGAAGGTCTCTGCATTTGGCAAACAACTTCCTTCCTCTTGCCTTTAA ATGAAGGAGGTAAAAAATCCTATCATGAGAGTAAATCAAAAAGTGCAGATGAAAGACGTTAGATATGAAGGCATAAGGGGGAATTCAACATCCCAAGCGGCAGTAAGTTTTGAATGCAGCCAAGTTCTTCCATGCGAAGGCATAGTGTTACAAGAAATTAACCTCTCCTTCAAAGGTGATGGCCAACCAACCTCCATTTGTCATAATGTGAAGGTCTCTGCATTTGGCAAACAACTTCCTTCCTCTTGCCTTTAA MKEVKNPIMRVNQKVQMKDVRYEGIRGNSTSQAAVSFECSQVLPCEGIVLQEINLSFKGDGQPTSICHNVKVSAFGKQLPSSCL Homology
BLAST of CmaCh16G009360 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 8.8e-11 Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of CmaCh16G009360 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10 Identity = 27/74 (36.49%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of CmaCh16G009360 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 5.7e-10 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of CmaCh16G009360 vs. ExPASy Swiss-Prot
Match: P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08 Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 0
BLAST of CmaCh16G009360 vs. ExPASy Swiss-Prot
Match: P05117 (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07 Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of CmaCh16G009360 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein ) HSP 1 Score: 68.2 bits (165), Expect = 3.7e-12 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of CmaCh16G009360 vs. TAIR 10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 6.9e-11 Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 0
BLAST of CmaCh16G009360 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 5.9e-10 Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of CmaCh16G009360 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09 Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of CmaCh16G009360 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09 Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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