CmaCh16G008330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G008330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Spindle pole body component protein
Location	Cma_Chr16: 4733969 .. 4735176 (-)
RNA-Seq Expression	CmaCh16G008330
Synteny	CmaCh16G008330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGAAAACTATAGGGTAAGTGTAAATGCCCAAAAAGCCCATGCAATTGTGATTACAGAAAAGGGAATGAAGAATGTTTTGGTAATTTTACAAGACTAATACAAATGTAACCACAGGGAAGCCAATGGCCAACGGTTTCTATAAATTCAGAATCAAGTCCCCTCAACTGGGGAAACTCACCACCACCACAAGTTGCCGGGATTCTACTACGGACGCCGGAGTGGAGAATGGACTCCTGCCGCTTCAGTCTTTGATACAGATTGTCAATTTTTGGTGCTTTCAACTTTGCCTCTTTCTCGGAGTCGGATCAGAGCCTTCCTTCTCGTTCTGACCACTCTCTTCACAACGAGAGACTTGCAGGGCGGTGTGTTTCCCGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAATATGTCTCGCCTGGAGAATCCGGAGGCTACGGCGGCGCCGGGCGTCGAGGAGATGAAATCTCTGGCTCCGATTGCCACCAGAAAACACCGGCGGAGAAAACGAGGTGCGTTGTTGCCTTCAGCGGCAAAACTAGCTGCCGATTGGAAGCCGTCGCTAGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGTTGAGGGAGAGAGAGAAGAGCGATGATCAGACGGCGGGATCGGAACGATCGGTGAAGAGGAAAAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTAACGGCCGTAGTAACAGTAACGATTTCAGGTACGTACGTTTGTGATTTCGTGAATCTTCCGTATCATTATCGAAACCGTAAAGATCTGTGAAATGAAAGCGACATCTGAAACGAATCTTTCTGTTATTTTCCCTCTCTCAGGCGAAGTCCGGCATCGATCCCAGTCGTGATCCCGGCATTTTCTCCGACTCCGTTCTTGTTCTGATGCGATTCCGCTTCCAGTTTCTGATCAATCAGGCCCTTGTAATATATGTTATATGTATATATTTTGCATAATAAATTATAATTTGAAAGTATAAAGTTGAGGTTGAGGAAGAAAACTTCTCCATGGAATTGTAGCTTGTTTGGCTGTTCTCTTCAATGGGAACTCTCTGCAATTTAAAATGTTCCCATTCTTACATGATGCTTTGATTTCTCTCCACACTGTTTTGGATTATTGTTAGAGCAAGAATGTTGATTCGGTTTATGGATCTTTACAGAATTGCGTTGGATGGAGAAGCA

mRNA sequence

GTAGGAAAACTATAGGGTAAGTGTAAATGCCCAAAAAGCCCATGCAATTGTGATTACAGAAAAGGGAATGAAGAATGTTTTGGTAATTTTACAAGACTAATACAAATGTAACCACAGGGAAGCCAATGGCCAACGGTTTCTATAAATTCAGAATCAAGTCCCCTCAACTGGGGAAACTCACCACCACCACAAGTTGCCGGGATTCTACTACGGACGCCGGAGTGGAGAATGGACTCCTGCCGCTTCAGTCTTTGATACAGATTGTCAATTTTTGGTGCTTTCAACTTTGCCTCTTTCTCGGAGTCGGATCAGAGCCTTCCTTCTCGTTCTGACCACTCTCTTCACAACGAGAGACTTGCAGGGCGGTGTGTTTCCCGATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAATATGTCTCGCCTGGAGAATCCGGAGGCTACGGCGGCGCCGGGCGTCGAGGAGATGAAATCTCTGGCTCCGATTGCCACCAGAAAACACCGGCGGAGAAAACGAGGTGCGTTGTTGCCTTCAGCGGCAAAACTAGCTGCCGATTGGAAGCCGTCGCTAGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGTTGAGGGAGAGAGAGAAGAGCGATGATCAGACGGCGGGATCGGAACGATCGGTGAAGAGGAAAAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTAACGGCCGTAGTAACAGTAACGATTTCAGGCGAAGTCCGGCATCGATCCCAGTCGTGATCCCGGCATTTTCTCCGACTCCGTTCTTGTTCTGATGCGATTCCGCTTCCAGTTTCTGATCAATCAGGCCCTTGTAATATATGTTATATGTATATATTTTGCATAATAAATTATAATTTGAAAGTATAAAGTTGAGGTTGAGGAAGAAAACTTCTCCATGGAATTGTAGCTTGTTTGGCTGTTCTCTTCAATGGGAACTCTCTGCAATTTAAAATGTTCCCATTCTTACATGATGCTTTGATTTCTCTCCACACTGTTTTGGATTATTGTTAGAGCAAGAATGTTGATTCGGTTTATGGATCTTTACAGAATTGCGTTGGATGGAGAAGCA

Coding sequence (CDS)

ATGAAATTCCTTTTTGAGTTCGTTTCTTGCTGCGTGCCGGTGAATATGTCTCGCCTGGAGAATCCGGAGGCTACGGCGGCGCCGGGCGTCGAGGAGATGAAATCTCTGGCTCCGATTGCCACCAGAAAACACCGGCGGAGAAAACGAGGTGCGTTGTTGCCTTCAGCGGCAAAACTAGCTGCCGATTGGAAGCCGTCGCTAGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGTTGAGGGAGAGAGAGAAGAGCGATGATCAGACGGCGGGATCGGAACGATCGGTGAAGAGGAAAAGCGGATCTCGAGACGGAGAGGCCAGAGGAGTTAACGGCCGTAGTAACAGTAACGATTTCAGGCGAAGTCCGGCATCGATCCCAGTCGTGATCCCGGCATTTTCTCCGACTCCGTTCTTGTTCTGA

Protein sequence

MKFLFEFVSCCVPVNMSRLENPEATAAPGVEEMKSLAPIATRKHRRRKRGALLPSAAKLAADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDFRRSPASIPVVIPAFSPTPFLF

Homology

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BLAST of CmaCh16G008330 vs. TAIR 10
Match: AT5G54585.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MKFLFEFVSCCVPVNMSRLENPEATAAPGV-EEMKSLAPIATRKHRRRKRGALLPSAAKL 60
           MKFL E V  C      + E+  +TA   V +E ++L      K RRR++   +      
Sbjct: 1   MKFLLELVVPCFGSQQFQ-ESAASTADDSVSDETQTL-----MKQRRRRKRVRVAGQPGQ 60

Query: 61  AADWKPSLGAISEDKVVLVLREREKSDDQTAGSERSVKRKSGSRDGEARGVNGRSNSNDF 120
            A+W+PSL  ISE+K   + +  EK++++     +S     G     + G + R  S+DF
Sbjct: 61  VAEWRPSLSVISENKPA-ITKISEKNEEKKKVRRKSEGNGGGDASSRSGGGHIRFRSDDF 120

Query: 121 RRSPASIPVVIPAFSPTPFLF 141
            R+  +   VIPAFSPTPF+F
Sbjct: 121 GRN--AFEPVIPAFSPTPFMF 132

The following BLAST results are available for this feature:

BLAST of CmaCh16G008330 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G008330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54585.1	2.7e-07	33.33	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..126
None	No IPR available	PANTHER	PTHR35318	BNAA10G08410D PROTEIN	coord: 1..140
None	No IPR available	PANTHER	PTHR35318:SF2	BNAA10G08410D PROTEIN	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G008330.1	CmaCh16G008330.1	mRNA