Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATTCGCCTTCGCTATGGCTTGGATTGTCACCCTCCCAATCGGGGTCATTCAAGCGACAACCAACCAGGTAATCAAACGGGAATTAGTAGTAGTAGCACACGCTCGACTTTGTTTACGTTCTAAAACAAACGACTTATAAATCCATATGAAATGTTATGCAGCAACCTAGATATGATATCATAGCACAACTCATCATTGATTATATTCTCTCTCGAAAACCAATAGCAAATCTTCTTTTCAAGATCTATGGAAGAATTAGTATAGTTCATGCTCTTTCTTTCTTATCTAATCTTAAATTTGGCCATTACATGAAAATTCCCCCAGATGCATGTACACTGCCCAGATGATCTTTTAGCAAACTTCAATATTTCTTTTGAGAGTTTATAATCTTGACTGATTCGTGTTTTCTCAGTTAGTCTGGACACTTGTTGCCGGGATGATTAATCTCGTCATTGCTTGGTGGATGTTAGACAATATAGACAACATCTGTGATATTGAGGCTCTCCAACCTGATAGTCCATGGACGTGTCCGAAATACCGAGTGACGTTTGATGCATCTGTTATCTGGGGACTAATAGGACCGAGGCGATTGTTTGGACCGGGCAGGTTGTATCGAAACTTGGTGTGGCTATTCCTGATTGGAGCTATTCTTCTCGTTCCTATTTGGGCATTGAGGAAAGCTTTCCCTGAAAAGAAATGGATTGCACTAATAAACATACCAGTTATATCCTATGGCTTTGCAGGGACGCCACCAGCCACTCCTACAAACATAGCTAGCTGGCTCATCATTGGTACCATCTTCAGATACCATAAGCGATAGTGGCAGAAGTACAACTATGTCCTCTCGACCGAGCTCGACGCAGGGACAGCGTTCATGGGCATGCTGCTTTTCATTGTGTTGCAAAATAGGGGCCATAGCTTGAAGTGGTGGGGATCACAACCCGATCACTGTCCTTTGGCTAAGTGTCCAACCGCTCTCGGGATCGTCGTTAAAGGATGTCCAGTGTTTTAG
mRNA sequence
ATGCTATTCGCCTTCGCTATGGCTTGGATTGTCACCCTCCCAATCGGGGTCATTCAAGCGACAACCAACCAGTTAGTCTGGACACTTGTTGCCGGGATGATTAATCTCGTCATTGCTTGGTGGATGTTAGACAATATAGACAACATCTGTGATATTGAGGCTCTCCAACCTGATAGTCCATGGACGTGTCCGAAATACCGAGTGACGTTTGATGCATCTGTTATCTGGGGACTAATAGGACCGAGGCGATTGTTTGGACCGGGCAGGTTGTATCGAAACTTGGTGTGGCTATTCCTGATTGGAGCTATTCTTCTCGTTCCTATTTGGGCATTGAGGAAAGCTTTCCCTGAAAAGAAATGGATTGCACTAATAAACATACCAGTTATATCCTATGGCTTTGCAGGGACGCCACCAGCCACTCCTACAAACATAGCTAGCTGGCTCATCATTGGGACAGCGTTCATGGGCATGCTGCTTTTCATTGTGTTGCAAAATAGGGGCCATAGCTTGAAGTGGTGGGGATCACAACCCGATCACTGTCCTTTGGCTAAGTGTCCAACCGCTCTCGGGATCGTCGTTAAAGGATGTCCAGTGTTTTAG
Coding sequence (CDS)
ATGCTATTCGCCTTCGCTATGGCTTGGATTGTCACCCTCCCAATCGGGGTCATTCAAGCGACAACCAACCAGTTAGTCTGGACACTTGTTGCCGGGATGATTAATCTCGTCATTGCTTGGTGGATGTTAGACAATATAGACAACATCTGTGATATTGAGGCTCTCCAACCTGATAGTCCATGGACGTGTCCGAAATACCGAGTGACGTTTGATGCATCTGTTATCTGGGGACTAATAGGACCGAGGCGATTGTTTGGACCGGGCAGGTTGTATCGAAACTTGGTGTGGCTATTCCTGATTGGAGCTATTCTTCTCGTTCCTATTTGGGCATTGAGGAAAGCTTTCCCTGAAAAGAAATGGATTGCACTAATAAACATACCAGTTATATCCTATGGCTTTGCAGGGACGCCACCAGCCACTCCTACAAACATAGCTAGCTGGCTCATCATTGGGACAGCGTTCATGGGCATGCTGCTTTTCATTGTGTTGCAAAATAGGGGCCATAGCTTGAAGTGGTGGGGATCACAACCCGATCACTGTCCTTTGGCTAAGTGTCCAACCGCTCTCGGGATCGTCGTTAAAGGATGTCCAGTGTTTTAG
Protein sequence
MLFAFAMAWIVTLPIGVIQATTNQLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRRLFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTNIASWLIIGTAFMGMLLFIVLQNRGHSLKWWGSQPDHCPLAKCPTALGIVVKGCPVF
Homology
BLAST of CmaCh16G008000 vs. ExPASy Swiss-Prot
Match:
O23482 (Oligopeptide transporter 3 OS=Arabidopsis thaliana OX=3702 GN=OPT3 PE=2 SV=3)
HSP 1 Score: 305.1 bits (780), Expect = 6.0e-82
Identity = 159/289 (55.02%), Postives = 176/289 (60.90%), Query Frame = 0
Query: 1 MLFAFAMAWIVTLPIGVIQATTN------------------------------------- 60
MLFAFA+A+IVTLPIGVIQATTN
Sbjct: 449 MLFAFALAFIVTLPIGVIQATTNQQPGYDIIGQFIIGYILPGKPIANLIFKIYGRISTVH 508
Query: 61 ------------------------QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDS 120
QLV T+VAG++NL +AWWML++I +ICDIE P+S
Sbjct: 509 ALSFLADLKLGHYMKIPPRCMYTAQLVGTVVAGVVNLGVAWWMLESIQDICDIEGDHPNS 568
Query: 121 PWTCPKYRVTFDASVIWGLIGPRRLFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKK 180
PWTCPKYRVTFDASVIWGLIGPRRLFGPG +YRNLVWLFLIGA+L VP+WAL K FP KK
Sbjct: 569 PWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLIGAVLPVPVWALSKIFPNKK 628
Query: 181 WIALINIPVISYGFAGTPPATPTNIASWLI-----------------------------I 200
WI LINIPVISYGFAG PPATPTNIASWL+
Sbjct: 629 WIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDA 688
BLAST of CmaCh16G008000 vs. ExPASy Swiss-Prot
Match:
Q9FME8 (Oligopeptide transporter 4 OS=Arabidopsis thaliana OX=3702 GN=OPT4 PE=1 SV=1)
HSP 1 Score: 196.8 bits (499), Expect = 2.3e-49
Identity = 107/288 (37.15%), Postives = 143/288 (49.65%), Query Frame = 0
Query: 1 MLFAFAMAWIVTLPIGVIQATTN------------------------------------- 60
++FA AMA++ TLPI +I ATTN
Sbjct: 441 LVFASAMAFVFTLPISIITATTNQTPGLNIITEYAMGLIYPGRPIANVCFKVYGYMSMAQ 500
Query: 61 ------------------------QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDS 120
Q + T++AG IN+ +AWW L++I NIC E L P+S
Sbjct: 501 AVSFLNDFKLGHYMKIPPRSMFLVQFIGTILAGTINITVAWWQLNSIKNICQEELLPPNS 560
Query: 121 PWTCPKYRVTFDASVIWGLIGPRRLFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKK 180
PWTCP RV FDASVIWGL+GP+R+FG Y + W FL GA+ V +W+L KAFP++
Sbjct: 561 PWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYAAMNWFFLGGALGPVIVWSLHKAFPKRS 620
Query: 181 WIALINIPVISYGFAGTPPATPTNIASWLIIGT--------------------------- 199
WI L+N+PV+ A PPAT N SW+++GT
Sbjct: 621 WIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYVLSAAMDA 680
BLAST of CmaCh16G008000 vs. ExPASy Swiss-Prot
Match:
O04514 (Oligopeptide transporter 2 OS=Arabidopsis thaliana OX=3702 GN=OPT2 PE=2 SV=2)
HSP 1 Score: 192.6 bits (488), Expect = 4.3e-48
Identity = 93/206 (45.15%), Postives = 124/206 (60.19%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q + T++AG +N+ +AW++L +++NIC E L P+SPWTCP RV FDASVIWGL+GP+R
Sbjct: 529 QFIGTVIAGTVNISVAWYLLTSVENICQKELLPPNSPWTCPSDRVFFDASVIWGLVGPKR 588
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG Y L W FL G I V +W L+KAFP K WI+ IN+PV+ A PPAT N
Sbjct: 589 IFGRLGNYPALNWFFLGGLIGPVLVWLLQKAFPTKTWISQINLPVLLGATAAMPPATSVN 648
Query: 144 IASWLIIGT-----------------------------AFMGMLLFIVLQNRGHSLK-WW 200
W+I+G AFMG+LL+ L G S+ WW
Sbjct: 649 FNCWIIVGVIFNYFVFKYCKKWWQRYNYVLSAALDAGLAFMGVLLYFSLTMNGISINHWW 708
BLAST of CmaCh16G008000 vs. ExPASy Swiss-Prot
Match:
Q9T095 (Oligopeptide transporter 6 OS=Arabidopsis thaliana OX=3702 GN=OPT6 PE=2 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 4.8e-47
Identity = 94/207 (45.41%), Postives = 120/207 (57.97%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q+ TLVA ++ AWW+++ I ++CD L DS WTCP RV FDASVIWGL+GPRR
Sbjct: 530 QVAGTLVAVVVYTGTAWWLMEEIPHLCDTSLLPSDSQWTCPMDRVFFDASVIWGLVGPRR 589
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG Y N+ W FL+GAI + +W K FP + WIA I+IPV+ A PPAT N
Sbjct: 590 VFGDLGEYSNVNWFFLVGAIAPLLVWLATKMFPAQTWIAKIHIPVLVGATAMMPPATAVN 649
Query: 144 IASWLII-----------------------------GTAFMGMLLFIVLQNRGHSLKWWG 200
SWLI+ G+AFM +LLF+ L +G ++WWG
Sbjct: 650 FTSWLIVAFIFGHFIFKYRRVWWTKYNYVLSGGLDAGSAFMTILLFLALGRKGIEVQWWG 709
BLAST of CmaCh16G008000 vs. ExPASy Swiss-Prot
Match:
O82485 (Oligopeptide transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OPT7 PE=2 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 7.6e-45
Identity = 86/205 (41.95%), Postives = 121/205 (59.02%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q+V TL++ + L AWW+++ I NICD +S WTCP +V +DASVIWGLIGPRR
Sbjct: 564 QIVGTLISCFVYLTTAWWLMETIPNICDSVT---NSVWTCPSDKVFYDASVIWGLIGPRR 623
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG LY+++ W FL+GAI + +W + FP ++WI LIN+PV+ + PPAT N
Sbjct: 624 IFGDLGLYKSVNWFFLVGAIAPILVWLASRMFPRQEWIKLINMPVLISATSSMPPATAVN 683
Query: 144 IASWLI-----------------------------IGTAFMGMLLFIVLQNRGHSLKWWG 200
+W++ G AFMG+LL++ L SL WWG
Sbjct: 684 YTTWVLAGFLSGFVVFRYRPNLWQRYNYVLSGALDAGLAFMGVLLYMCLGLENVSLDWWG 743
BLAST of CmaCh16G008000 vs. TAIR 10
Match:
AT4G16370.1 (oligopeptide transporter )
HSP 1 Score: 305.1 bits (780), Expect = 4.2e-83
Identity = 159/289 (55.02%), Postives = 176/289 (60.90%), Query Frame = 0
Query: 1 MLFAFAMAWIVTLPIGVIQATTN------------------------------------- 60
MLFAFA+A+IVTLPIGVIQATTN
Sbjct: 449 MLFAFALAFIVTLPIGVIQATTNQQPGYDIIGQFIIGYILPGKPIANLIFKIYGRISTVH 508
Query: 61 ------------------------QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDS 120
QLV T+VAG++NL +AWWML++I +ICDIE P+S
Sbjct: 509 ALSFLADLKLGHYMKIPPRCMYTAQLVGTVVAGVVNLGVAWWMLESIQDICDIEGDHPNS 568
Query: 121 PWTCPKYRVTFDASVIWGLIGPRRLFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKK 180
PWTCPKYRVTFDASVIWGLIGPRRLFGPG +YRNLVWLFLIGA+L VP+WAL K FP KK
Sbjct: 569 PWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLIGAVLPVPVWALSKIFPNKK 628
Query: 181 WIALINIPVISYGFAGTPPATPTNIASWLI-----------------------------I 200
WI LINIPVISYGFAG PPATPTNIASWL+
Sbjct: 629 WIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDA 688
BLAST of CmaCh16G008000 vs. TAIR 10
Match:
AT5G64410.1 (oligopeptide transporter 4 )
HSP 1 Score: 196.8 bits (499), Expect = 1.6e-50
Identity = 107/288 (37.15%), Postives = 143/288 (49.65%), Query Frame = 0
Query: 1 MLFAFAMAWIVTLPIGVIQATTN------------------------------------- 60
++FA AMA++ TLPI +I ATTN
Sbjct: 441 LVFASAMAFVFTLPISIITATTNQTPGLNIITEYAMGLIYPGRPIANVCFKVYGYMSMAQ 500
Query: 61 ------------------------QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDS 120
Q + T++AG IN+ +AWW L++I NIC E L P+S
Sbjct: 501 AVSFLNDFKLGHYMKIPPRSMFLVQFIGTILAGTINITVAWWQLNSIKNICQEELLPPNS 560
Query: 121 PWTCPKYRVTFDASVIWGLIGPRRLFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKK 180
PWTCP RV FDASVIWGL+GP+R+FG Y + W FL GA+ V +W+L KAFP++
Sbjct: 561 PWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYAAMNWFFLGGALGPVIVWSLHKAFPKRS 620
Query: 181 WIALINIPVISYGFAGTPPATPTNIASWLIIGT--------------------------- 199
WI L+N+PV+ A PPAT N SW+++GT
Sbjct: 621 WIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYVLSAAMDA 680
BLAST of CmaCh16G008000 vs. TAIR 10
Match:
AT1G09930.1 (oligopeptide transporter 2 )
HSP 1 Score: 192.6 bits (488), Expect = 3.1e-49
Identity = 93/206 (45.15%), Postives = 124/206 (60.19%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q + T++AG +N+ +AW++L +++NIC E L P+SPWTCP RV FDASVIWGL+GP+R
Sbjct: 529 QFIGTVIAGTVNISVAWYLLTSVENICQKELLPPNSPWTCPSDRVFFDASVIWGLVGPKR 588
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG Y L W FL G I V +W L+KAFP K WI+ IN+PV+ A PPAT N
Sbjct: 589 IFGRLGNYPALNWFFLGGLIGPVLVWLLQKAFPTKTWISQINLPVLLGATAAMPPATSVN 648
Query: 144 IASWLIIGT-----------------------------AFMGMLLFIVLQNRGHSLK-WW 200
W+I+G AFMG+LL+ L G S+ WW
Sbjct: 649 FNCWIIVGVIFNYFVFKYCKKWWQRYNYVLSAALDAGLAFMGVLLYFSLTMNGISINHWW 708
BLAST of CmaCh16G008000 vs. TAIR 10
Match:
AT4G27730.1 (oligopeptide transporter 1 )
HSP 1 Score: 189.1 bits (479), Expect = 3.4e-48
Identity = 94/207 (45.41%), Postives = 120/207 (57.97%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q+ TLVA ++ AWW+++ I ++CD L DS WTCP RV FDASVIWGL+GPRR
Sbjct: 530 QVAGTLVAVVVYTGTAWWLMEEIPHLCDTSLLPSDSQWTCPMDRVFFDASVIWGLVGPRR 589
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG Y N+ W FL+GAI + +W K FP + WIA I+IPV+ A PPAT N
Sbjct: 590 VFGDLGEYSNVNWFFLVGAIAPLLVWLATKMFPAQTWIAKIHIPVLVGATAMMPPATAVN 649
Query: 144 IASWLII-----------------------------GTAFMGMLLFIVLQNRGHSLKWWG 200
SWLI+ G+AFM +LLF+ L +G ++WWG
Sbjct: 650 FTSWLIVAFIFGHFIFKYRRVWWTKYNYVLSGGLDAGSAFMTILLFLALGRKGIEVQWWG 709
BLAST of CmaCh16G008000 vs. TAIR 10
Match:
AT4G10770.1 (oligopeptide transporter 7 )
HSP 1 Score: 181.8 bits (460), Expect = 5.4e-46
Identity = 86/205 (41.95%), Postives = 121/205 (59.02%), Query Frame = 0
Query: 24 QLVWTLVAGMINLVIAWWMLDNIDNICDIEALQPDSPWTCPKYRVTFDASVIWGLIGPRR 83
Q+V TL++ + L AWW+++ I NICD +S WTCP +V +DASVIWGLIGPRR
Sbjct: 564 QIVGTLISCFVYLTTAWWLMETIPNICDSVT---NSVWTCPSDKVFYDASVIWGLIGPRR 623
Query: 84 LFGPGRLYRNLVWLFLIGAILLVPIWALRKAFPEKKWIALINIPVISYGFAGTPPATPTN 143
+FG LY+++ W FL+GAI + +W + FP ++WI LIN+PV+ + PPAT N
Sbjct: 624 IFGDLGLYKSVNWFFLVGAIAPILVWLASRMFPRQEWIKLINMPVLISATSSMPPATAVN 683
Query: 144 IASWLI-----------------------------IGTAFMGMLLFIVLQNRGHSLKWWG 200
+W++ G AFMG+LL++ L SL WWG
Sbjct: 684 YTTWVLAGFLSGFVVFRYRPNLWQRYNYVLSGALDAGLAFMGVLLYMCLGLENVSLDWWG 743
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O23482 | 6.0e-82 | 55.02 | Oligopeptide transporter 3 OS=Arabidopsis thaliana OX=3702 GN=OPT3 PE=2 SV=3 | [more] |
Q9FME8 | 2.3e-49 | 37.15 | Oligopeptide transporter 4 OS=Arabidopsis thaliana OX=3702 GN=OPT4 PE=1 SV=1 | [more] |
O04514 | 4.3e-48 | 45.15 | Oligopeptide transporter 2 OS=Arabidopsis thaliana OX=3702 GN=OPT2 PE=2 SV=2 | [more] |
Q9T095 | 4.8e-47 | 45.41 | Oligopeptide transporter 6 OS=Arabidopsis thaliana OX=3702 GN=OPT6 PE=2 SV=1 | [more] |
O82485 | 7.6e-45 | 41.95 | Oligopeptide transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OPT7 PE=2 SV=1 | [more] |