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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGTTTTTAGGTTCGTAATGGCTGTAGTATTGATTATGTTTATGGTATTCTCTGATTTGCTTGGTTCTGACTGGATTTTGAGCCTTATCAACCTCAAGGTTTTATAAACAGTCTTGCTACTTTTCAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA mRNA sequence ATGAAGTTTTTAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA Coding sequence (CDS) ATGAAGTTTTTAGGACGGGAGGGCAAGTCTAGAAATCACAGATTCTGGTACCAGAGGCTTCAAAACATGGCAGATCTAGAAAATTTACTTCTTGAGGCTGCGGGAAGAACTAAGGCATCCGGGAGAAATCGACACTCTCATCCACCATCACGAAGACAGCGCGAAGGTTCATATTCTGATGCTGGAAGTGACTCGAGGGATGATGACTCAGATGATGAACGTGGTTATGCGAGCAGGAAGCCATCTGGATCTCAGGTTCCTCTGAAGAAGAGGTTAGATCCTAATGAGAGGGATGATGATGTGGGCAGCCCAGAAGAAGGGGAAGACGAAGATGTTGGTTCAGAACACGAGGGTGACAGCAGTGATGAGTCTGATGTTGGGGATGATCTTTACAAAGATGACGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCATCGAAGAAGAATGATAAGCATTTATATGAAAGCTTGAGATCTAAGATGGATAAAGGGAAGGCTGCCCCGTCTCGGAAAGAAAATCCTCCTCTCCCGTCATCTCGTATTAGATCGTCAGCCCGATCTGCTGATAGAGCAGCTGCAAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAGCAGCAGGACCCTGAGGCTCACCGCAAATTGAGAGATACATCTAGAGGAAACGCAAATAATCGAAGGTTCTCACCAACAAAGCGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGCCAAAGTGAAAGTGAAAGTAGGTTTCAAAGTGACGATGAAGGATCTACAGGAGATGGTGGAATGATTGACAGTGACGATGAAAGAACCATGCCTGGTTCAAATGGGCCAACATTTGATGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAGCCATTCTTTGAGGAGTTGATTGTTGGATGCTTTGTGAGAGTCGGAATCGGGAGATCAAGATCTGGGCCTATCTACAGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAACTCGAGAACAAAATCACGCATAAATATCTTAATGTTATTTGGGGAAATGAAAGTTCTGCTGCCAGATGGCAAATGGCTATGGTTTCGGACTCTGTTCCACTCGAGGATGAATATAAACAGTGGGTGAAGGAAGTAGAGCGAACGGGCGGTCGGATGCTGAGCAAGCAGGATATCTTGGAGAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTGTACTCAGCAGCCACAGTGAAGCAGATGTTGCAGGAGAAAAAATTTGCCTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGACTGAGGAATCAGATGGACGTAGCACTAAGCAAAAACAATGAAGCTGAGGTGGAGAGGATCAAGGCAAAACTGCGCCAATTAGACGCATCCAGGAGGTCACAAATGAAAGATGCCAAGGCTATTAGGTTATCTGAGATGAACAGGAAGAATAGGGTGGAAAACTTCAAGAATGCATCAGAACTAAGACCCACGAAAGATTTGAAAGCCGGTGAGGCTGGTTATGATCCCTTCTCTAGGAGATGGACGAGGTCGAGGAATTATTATGTTTCAAACGCTGGTCAAGTCGATGGGGCTGCCGAGGCAGCTGGCAACAGTGACAATATAACTCCTGCATCAGAGAGTACTGGAACAGGATCTGGAGAAGCTGGTGTGGCAGCTACCGCAGCAGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTCGATACTAACGCTCCAGTAGATGGAGGAACAGAATCGAACTTGCTGCACAACTTCGAGCTGCCTATATCATTGACTGTGCTTCAGAAATTTGGTGGTGCTCTGGGAGCTCAAGCTGGGTTCTTAGCAAGGAAACAAAGGATAGAAGCCACAGTTGGGCGTCAAGTCCCTGAGAATGATGGTAGGCGGCATGCACTGACACTCACTGTTAGCGACTACAAGAGAAGAAGAGGGCTTCTTTGA Protein sequence MKFLGREGKSRNHRFWYQRLQNMADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPSGSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFELPISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Homology
BLAST of CmaCh16G006620 vs. ExPASy Swiss-Prot
Match: Q9C950 (Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1) HSP 1 Score: 800.0 bits (2065), Expect = 2.0e-230 Identity = 456/659 (69.20%), Postives = 533/659 (80.88%), Query Frame = 0
Query: 23 MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
M DLENLLLEAAGRT ++GR+R HPPS R+REGSYSD SDSR DDSD++RGYASRKPS
Sbjct: 1 MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60
Query: 83 GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
GSQVPLKKRL+ ER+D E G D S+ EGDSS+ESD GDDLYK+++DR+KLAG
Sbjct: 61 GSQVPLKKRLEA-EREDRAARVEGGYG-DGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120
Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
M+E QREMILS+RA KK DK+ E LRSK + K S+KE PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180
Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP + +LSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240
Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
S+SR QSDDEGS +GGM+DSDD+R S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 SDSRSQSDDEGS--NGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300
Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360
Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
QMAM+SD PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420
Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
EKK AS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR + D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480
Query: 503 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
L+EMN+KNR ENFKNASE++ T LKAGEAGYDPFSRRWTRS NYY DG
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540
Query: 563 AGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFEL 622
A + A E+ G +G AGV AT AALEAAA AGKL+DT AP+ G E N LHNFEL
Sbjct: 541 AA----VAAAVETNGADAG-AGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFEL 600
Query: 623 PISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
+SLT LQK+GG G Q F+ARKQ EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
BLAST of CmaCh16G006620 vs. ExPASy Swiss-Prot
Match: Q92541 (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4) HSP 1 Score: 107.8 bits (268), Expect = 4.8e-22 Identity = 181/697 (25.97%), Postives = 301/697 (43.19%), Query Frame = 0
Query: 25 DLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYAS--RKPS 84
+L+ LL A R ++ + PP S A SDS DSDDE + S K
Sbjct: 63 NLDQELLSLAKRKRSDSEEK--EPPV------SQPAASSDSETSDSDDEWTFGSNKNKKK 122
Query: 85 GSQVPLKKR------------LDPNERDDDVGS--PEEGEDEDVGSEHEGDSSDESD--- 144
G ++K+ +++D S PEEGE D S SSD
Sbjct: 123 GKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSE 182
Query: 145 -------VGDDLYKDDDDRRKLAGMSELQREMILSDRASK----KNDKHLYESLRSKMDK 204
G+DL D++DR +L M+E +RE L +R K K + + L++ K
Sbjct: 183 DEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKK 242
Query: 205 GKAAPSRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQD--PEAHRKLRDTS 264
K +K+ ++ S + K E R+KR ++ D +A +L+
Sbjct: 243 EKKEKKKKQEEEQEKKKLTQIQESQVTSHNK-----ERRSKRDEKLDKKSQAMEELKAER 302
Query: 265 RGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDER-TMPGS 324
N K++P + S + E E S+ + D ++E+ +P
Sbjct: 303 EKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPK 362
Query: 325 NGPTF--DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVD 384
+ P +++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V
Sbjct: 363 SQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV- 422
Query: 385 ATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEVERTGGR 444
E + Y+L T+K L + GN+ R + VS+ E E+ +W KE + G
Sbjct: 423 -VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGM 482
Query: 445 MLSKQDILEKKE-AIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRNQMDVAL 504
L D + KKE +I++A N+ ++ ++++++EK+ P N A +K +L + +A
Sbjct: 483 QLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAE 542
Query: 505 SKNNEAEVERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTK 564
++ + ++I+ +L +L +A R + K+ AI S +N++NR N + + +
Sbjct: 543 DLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAE 602
Query: 565 DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGSGEAGVA 624
DPF+RR + + VSN+ D A +AA A + GSG
Sbjct: 603 SHNMKNQQMDPFTRR--QCKPTIVSNSR--DPAVQAA------ILAQLNAKYGSG----V 662
Query: 625 ATAAALEAAAGAGKLVDTNAPVDGGTESNL--LHNFELPISLTVLQKFGGALGAQAGFLA 680
A E + G GK D N+ +L +H+F++ I L V AL
Sbjct: 663 LPDAPKEMSKGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKAL-------- 710
BLAST of CmaCh16G006620 vs. ExPASy Swiss-Prot
Match: A2AQ19 (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 4.8e-22 Identity = 181/697 (25.97%), Postives = 305/697 (43.76%), Query Frame = 0
Query: 25 DLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYAS--RKPS 84
+L+ LL A R ++ + PP S A SDS DSDDE + S K
Sbjct: 68 NLDQELLSLAKRKRSDSEEK--EPPV------SQPAASSDSETSDSDDEWTFGSNKNKKK 127
Query: 85 GSQVPLKKR------------LDPNERDDDVGS--PEEGEDED-----VGSEHEGDSSDE 144
G ++K+ ++RD S PEEGE D S + DSS E
Sbjct: 128 GKTRKVEKKGAMKKQANKAASSGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSE 187
Query: 145 SD-----VGDDLYKDDDDRRKLAGMSELQREMILSDRASK----KNDKHLYESLRSKMDK 204
+ G+DL D++DR +L M+E +RE L +R K K + + L++ K
Sbjct: 188 DEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKK 247
Query: 205 GKAAPSRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQD--PEAHRKLRDTS 264
K +K+ ++ S + K E R+KR ++ D +A +L+
Sbjct: 248 EKKEKKKKQEEEQEKKKLTQIQESQVTSHNK-----ERRSKRDEKLDKKSQAMEELKAER 307
Query: 265 RGNANNRRFSPTKRKPF-TAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERTMPGS 324
N K++P T+ S + E + + + S+ + +++ +P
Sbjct: 308 EKRKNRTAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEEIPPK 367
Query: 325 NGPTF--DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVD 384
+ P +++ + + R KL +W PFF + + GCFVR+GIG S P+YR+ + V
Sbjct: 368 SQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGV- 427
Query: 385 ATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEVERTGGR 444
E + Y+L T+K L + GN+ R + VS+ E E+ +W KE + G
Sbjct: 428 -VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEAMFSAGM 487
Query: 445 MLSKQDILEKKE-AIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRNQMDVAL 504
L D + KKE +I++A N+ ++ ++++++EK+ P N A +K +L + +A
Sbjct: 488 QLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAE 547
Query: 505 SKNNEAEVERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNASELRPTK 564
++ + ++I+ +L +L +A R + K+ AI S +N++NR N + + +
Sbjct: 548 DLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESEKALVAE 607
Query: 565 DLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGSGEAGVA 624
DPF+RR + + VSN+ D A +AA A + GSG
Sbjct: 608 SHNMRNQQMDPFTRR--QCKPTIVSNSR--DPAVQAA------ILAQLNAKYGSG----V 667
Query: 625 ATAAALEAAAGAGKLVDTNAPVDGGTESNL--LHNFELPISLTVLQKFGGALGAQAGFLA 680
A E + G GK D N+ +L +H+F++ I L V AL
Sbjct: 668 LPDAPKEMSKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKAL-------- 715
BLAST of CmaCh16G006620 vs. ExPASy Swiss-Prot
Match: Q5RAD5 (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2) HSP 1 Score: 94.0 bits (232), Expect = 7.1e-18 Identity = 165/648 (25.46%), Postives = 283/648 (43.67%), Query Frame = 0
Query: 29 LLLEAAGRTKASGRNRHSHPPSRRQREGSYSD----------AGSDSRDDDSDDERGYAS 88
+++++ S N PS +R+ S S+ A SDS DSDDE + S
Sbjct: 44 VVIDSDTEDSGSDENLDQELPSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGS 103
Query: 89 --RKPSGSQVPLKKR------------LDPNERDDDVGS--PEEGEDEDVGSEHEGDSSD 148
K G ++K+ +++D S PEEGE D S SSD
Sbjct: 104 NKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSD 163
Query: 149 ESD----------VGDDLYKDDDDRRKLAGMSELQREMILSDRASK----KNDKHLYESL 208
G+DL D++DR +L M+E +RE L +R K K + + L
Sbjct: 164 SDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKL 223
Query: 209 RSKMDKGKAAPSRKENPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQD--PEAHR 268
++ K K +K+ ++ S + K E R+KR ++ D +A
Sbjct: 224 KTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK-----ERRSKRDEKLDKKSQAME 283
Query: 269 KLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDER 328
+L+ N K++P + S + E E S+ + D ++E+
Sbjct: 284 ELKAEREKRKNRTVELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEK 343
Query: 329 -TMPGSNGPTF--DDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLC 388
+P + P +++ + + R KL +W PFF + + GCFVR+GIG S P+YR+
Sbjct: 344 EEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVA 403
Query: 389 LVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEYKQWVKEV 448
+ V E + Y+L T+K L + GN+ R + VS+ E E+ +W KE
Sbjct: 404 EITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KEA 463
Query: 449 ERTGGRMLSKQDILEKKE-AIQKANNFVYSAATVKQMLQEKKFASSRPLNIAAEKDRLRN 508
+ G L D + KKE +I++A N+ ++ ++++++EK+ P N A +K +L
Sbjct: 464 MFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLK 523
Query: 509 QMDVALSKNNEAEVERIKAKLRQL----DASRRSQMKDAKAIRLSEMNRKNRVENFKNAS 568
+ +A ++ + ++I+ +L +L +A R + K+ AI S +N++NR N +
Sbjct: 524 EKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI--SYINQRNREWNIVESE 583
Query: 569 ELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPASESTGTGS 625
+ + DPF+RR + + VSN+ D A +AA A + GS
Sbjct: 584 KALVAESHNMKNQQMDPFTRR--QCKPTIVSNSR--DPAVQAA------ILAQLNAKYGS 643
BLAST of CmaCh16G006620 vs. ExPASy Swiss-Prot
Match: G5EBY0 (RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans OX=6239 GN=rtfo-1 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 1.8e-13 Identity = 144/599 (24.04%), Postives = 258/599 (43.07%), Query Frame = 0
Query: 67 DDDSDDERGYASRKPSGSQVPLKKRLDPNERDDDVGSPE----EGEDEDVGSEHEGDSSD 126
D DSD + G KP + D + D D P+ + + SSD
Sbjct: 22 DSDSDSDAGPKPGKPLST--------DSSASDSDAEKPQAKPAKKKTLTKRKRRATGSSD 81
Query: 127 ESDVGDDLYKDDDDRRKLAGMSELQREMILSDR--------------------ASKKNDK 186
+ V DDL+ D +D+ + ++EL++E + +R A K ++K
Sbjct: 82 DDQVDDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEIAQQLAKKAKKSSEK 141
Query: 187 HLYESLRSKMDKG---KAAPSRKENPPLPSSRIRSSARSAD--RAAAKDDALNELRAKRL 246
+ R KM+ G +P RK + S + R +D R + +A++ L+ KR
Sbjct: 142 GVKTEKRRKMNSGGSDAGSPKRKASSDSDSEMDAAFHRPSDINRKHKEKNAMDALKNKR- 201
Query: 247 KQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDG 306
++ + NA N S + S SSSS SES S E S
Sbjct: 202 -----------KEIEKKNAKNEALSIDAVFGANSGSSSSSSSSESSRSSSSSRESSPERV 261
Query: 307 GMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGR-SRS 366
D ++ + G +++ + R KL+ + PFF+ +VGC+VR+G G+ S S
Sbjct: 262 SEKDKIVKKDVDG-----LSELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGS 321
Query: 367 GPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMVSDSVPLEDEY 426
G YR+ + V+ E ++ Y+LE K T+K + N S ++M VS++ + E+
Sbjct: 322 GSKYRIWKIVGVE--ESNKVYELEGKKTNKIIKC--QNGGSERPFRMQFVSNADFEQIEF 381
Query: 427 KQWVKEVERTGGRMLSKQDILE-KKEAIQKANNFVYSAATVKQMLQEKKFASSRPLNIAA 486
+W+ +R G L DI++ KK+ I+KA N YS V M++EK + P N A
Sbjct: 382 DEWLLACKRHGN--LPTVDIMDKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNFAM 441
Query: 487 EKDRLRNQMDVALSKNNEAEVERIKAKL----RQLDASRRSQMKDAKAIRLSEMNRKNRV 546
K Q ++A + + E E+I+ K+ RQ D + + K AI ++++
Sbjct: 442 TKANWSKQKELAQQRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNRSKI 501
Query: 547 ENFKNASELRPTKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEAAGNSDNITPAS 606
++ + +L+ ++ + DPF+R+ R + ++DG A+ ++ N++
Sbjct: 502 KDQVLSGQLKIEENSQD-----DPFTRKKGGMR-VVSGSKSRLDGTLSASSSTTNLSDGG 561
Query: 607 ESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFELPISLTVLQKF 631
+ + + + ++ T+ + LH+F+L I L L+ F
Sbjct: 562 KDKSSSLAKPTQPPPSTQIKKK----------------TDISSLHDFDLDIDLGKLKDF 567
BLAST of CmaCh16G006620 vs. TAIR 10
Match: AT1G61040.1 (plus-3 domain-containing protein ) HSP 1 Score: 800.0 bits (2065), Expect = 1.4e-231 Identity = 456/659 (69.20%), Postives = 533/659 (80.88%), Query Frame = 0
Query: 23 MADLENLLLEAAGRTKASGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDERGYASRKPS 82
M DLENLLLEAAGRT ++GR+R HPPS R+REGSYSD SDSR DDSD++RGYASRKPS
Sbjct: 1 MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60
Query: 83 GSQVPLKKRLDPNERDDDVGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 142
GSQVPLKKRL+ ER+D E G D S+ EGDSS+ESD GDDLYK+++DR+KLAG
Sbjct: 61 GSQVPLKKRLEA-EREDRAARVEGGYG-DGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120
Query: 143 MSELQREMILSDRASKKNDKHLYESLRSKMDKGKAAPSRKENPPLPSSR-IRSSARSADR 202
M+E QREMILS+RA KK DK+ E LRSK + K S+KE PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180
Query: 203 AAAKDDALNELRAKRLKQQDPEAHRKLRDTSRGNANNRRFSPTKRKPFTAPSLSSSSQSE 262
AAAKDDALNELRAKR+KQQDP A RKLRD S+G + +R FS TKRKP + +LSSSSQS+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240
Query: 263 SESRFQSDDEGSTGDGGMIDSDDERTMPGSNGPTFDDIKEITIRRSKLAKWLMEPFFEEL 322
S+SR QSDDEGS +GGM+DSDD+R S+ PTF+D+KE+TIRRSKLAKWLMEPFFEEL
Sbjct: 241 SDSRSQSDDEGS--NGGMLDSDDDR----SDVPTFEDVKEVTIRRSKLAKWLMEPFFEEL 300
Query: 323 IVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARW 382
IVGCFVRVGIGRS+SGPIYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARW
Sbjct: 301 IVGCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARW 360
Query: 383 QMAMVSDSVPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKANNFVYSAATVKQMLQ 442
QMAM+SD PLE+EY+QW++EVERT GRM +KQDI EKKEAIQ+ N+FVYSA TVKQMLQ
Sbjct: 361 QMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQ 420
Query: 443 EKKFASSRPLNIAAEKDRLRNQMDVALSKNNEAEVERIKAKLRQLDASRRSQMKDAKAIR 502
EKK AS RP+N+AAEKDRLR ++++A SKN+EA VERIK+K++QLDASR + D KA++
Sbjct: 421 EKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALK 480
Query: 503 LSEMNRKNRVENFKNASELRP-TKDLKAGEAGYDPFSRRWTRSRNYYVSNAGQVDGAAEA 562
L+EMN+KNR ENFKNASE++ T LKAGEAGYDPFSRRWTRS NYY DG
Sbjct: 481 LAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENE 540
Query: 563 AGNSDNITPASESTGTGSGEAGVAATAAALEAAAGAGKLVDTNAPVDGGTESNLLHNFEL 622
A + A E+ G +G AGV AT AALEAAA AGKL+DT AP+ G E N LHNFEL
Sbjct: 541 AA----VAAAVETNGADAG-AGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFEL 600
Query: 623 PISLTVLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 680
+SLT LQK+GG G Q F+ARKQ EATVG +V ENDG+RH LTLTVSDYKRRRGLL
Sbjct: 601 SLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9C950 | 2.0e-230 | 69.20 | Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1 | [more] |
| Q92541 | 4.8e-22 | 25.97 | RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 P... | [more] |
| A2AQ19 | 4.8e-22 | 25.97 | RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 ... | [more] |
| Q5RAD5 | 7.1e-18 | 25.46 | RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=960... | [more] |
| G5EBY0 | 1.8e-13 | 24.04 | RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans OX=6239... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G61040.1 | 1.4e-231 | 69.20 | plus-3 domain-containing protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 457..489 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 559..579 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 99..130 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 151..180 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 50..78 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 235..263 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 564..579 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 35..297 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 198..234 |
| None | No IPR available | PANTHER | PTHR13115:SF15 | PLUS-3 DOMAIN PROTEIN | coord: 23..679 |
| None | No IPR available | PANTHER | PTHR13115 | UNCHARACTERIZED | coord: 23..679 |
| IPR004343 | Plus-3 domain | SMART | SM00719 | rtf1 | coord: 293..405
e-value: 3.0E-44
score: 163.0 |
| IPR004343 | Plus-3 domain | PFAM | PF03126 | Plus-3 | coord: 298..403
e-value: 2.5E-30
score: 105.2 |
| IPR004343 | Plus-3 domain | PROSITE | PS51360 | PLUS3 | coord: 293..428
score: 36.648071 |
| IPR036128 | Plus3-like superfamily | GENE3D | 3.90.70.200 | | coord: 294..426
e-value: 9.7E-35
score: 121.3 |
| IPR036128 | Plus3-like superfamily | SUPERFAMILY | 159042 | Plus3-like | coord: 295..426 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016593 |
Cdc73/Paf1 complex |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:1990269 |
RNA polymerase II C-terminal domain phosphoserine binding |
|
