CmaCh16G006400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Cma_Chr16: 3315182 .. 3316512 (-)
RNA-Seq Expression	CmaCh16G006400
Synteny	CmaCh16G006400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAAAGAAGAGAGAGAAAAGGGGTAATCAATCATCTCTGCAACAAAATCAGAACATACGAAGAAGAAAGCGTTTTGTTCTTTATTTAAGTTAGCGCCACCGTTCCCCATGGCGGCGTTGCAGGTTCCATTTTTACACACACACACAGAATCTGATTCCCAATTTAATTCATACCCTTTTCTCCGCCCTGCCTTCCGATCACCGTTCAGAGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGATATGGATTTTAATTCAAAATTAGGCATAATCTCTCCGGTGAAATTATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGAAGCAGCGGCGGCGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAACGGTTTGGTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCACTGGTGATGGTGAGATCCGGCGGAGATGGCGGTGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGAAATCAAGCGAAGAAAGATTGTGTTCATATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACTTGGGTACCCGCCTCCAAACGCCGTGAGCGGCTGATCAGTACTACCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCAACTTCTTCCGGTACAATTAATTTCTTATTTTTAATTCAATTTTAGTTTTTGACCAAAACCCACATCGATTTTGTTCATGATTTACAGAATCAAACTTTTTTTTTTGGTTTTAGGGTTTGAAATAGGGAATTTCCCGGCGGAAATAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACTTTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTCACGACCACGGCCCTGATCAACAACAACACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGATTCCGCCGCACTACTGGATCCTCCGCCGTCATACCCAGCTCCACTCAGCAGCTACATCACCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAGCCGACGGTTTTCCGTTAGGGCATTGTGATTAAAAGAGAAATAGTGGAAATTGCAG

mRNA sequence

AGAGAGAGAAAGAAGAGAGAGAAAAGGGGTAATCAATCATCTCTGCAACAAAATCAGAACATACGAAGAAGAAAGCGTTTTGTTCTTTATTTAAGTTAGCGCCACCGTTCCCCATGGCGGCGTTGCAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAACGGTTTGGTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCACTGGTGATGGTGAGATCCGGCGGAGATGGCGGTGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGAAATCAAGCGAAGAAAGATTGTGTTCATATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACTTGGGTACCCGCCTCCAAACGCCGTGAGCGGCTGATCAGTACTACCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCAACTTCTTCCGGGTTTGAAATAGGGAATTTCCCGGCGGAAATAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACTTTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTCACGACCACGGCCCTGATCAACAACAACACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGATTCCGCCGCACTACTGGATCCTCCGCCGTCATACCCAGCTCCACTCAGCAGCTACATCACCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAGCCGACGGTTTTCCGTTAGGGCATTGTGATTAAAAGAGAAATAGTGGAAATTGCAG

Coding sequence (CDS)

ATGGCGGCGTTGCAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAACGGTTTGGTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCACTGGTGATGGTGAGATCCGGCGGAGATGGCGGTGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGAAATCAAGCGAAGAAAGATTGTGTTCATATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACTTGGGTACCCGCCTCCAAACGCCGTGAGCGGCTGATCAGTACTACCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCAACTTCTTCCGGGTTTGAAATAGGGAATTTCCCGGCGGAAATAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACTTTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTCACGACCACGGCCCTGATCAACAACAACACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGATTCCGCCGCACTACTGGATCCTCCGCCGTCATACCCAGCTCCACTCAGCAGCTACATCACCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG

Protein sequence

MAALQNYESFETEQQQQGGERFGYSGENSPARSSLVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLISTTGGDSKRPRDTHATSSGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPDQQQHHHNPPISASPDGGALLITTADSAALLDPPPSYPAPLSSYITAGTQFFQPPTS

Homology

[Close]

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 2.2e-48
Identity = 116/265 (43.77%), Postives = 159/265 (60.00%), Query Frame = 0


Query: 21  RFGYSGENSPA----RSSLVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG 80
           +F  SGE S A     ++++M+RSGG GGG   +SCQDCGNQAKKDC HMRCRTCCKSRG
Sbjct: 109 QFDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRG 168

Query: 81  FLCETHVKSTWVPASKRRER--LISTTGGDSKRPR----------DTHATS--------- 140
           F C THV+STWVPA+KRRER   ++T    ++ PR          +  ATS         
Sbjct: 169 FECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIP 228

Query: 141 --SGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPD 200
             SG E+GNFPAE++S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGIL+D GP 
Sbjct: 229 SHSGLEVGNFPAEVSSSAVFRCVRVSSVED--GEEEFAYQTAVSIGGHIFKGILYDLGPG 288

Query: 201 QQQHHHNPPI-----------------------------SASPDGGALLITTADSAALLD 230
                    +                             S++P+ G +  ++A +A  +D
Sbjct: 289 SSGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYID 348

[Close]

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-46
Identity = 115/264 (43.56%), Postives = 151/264 (57.20%), Query Frame = 0


Query: 18  GGERFGY---SGENSPARSSLVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKS 77
           G  R G+   +G++  +RS  VM+RSGG G     ISCQDCGNQAKKDC HMRCRTCCKS
Sbjct: 97  GPSRSGFDISAGDHEASRSGFVMMRSGGGG-----ISCQDCGNQAKKDCQHMRCRTCCKS 156

Query: 78  RGFLCETHVKSTWVPASKRRERL--------------ISTTGGDSKRPRDTHATSS---- 137
           RGF C+THVKSTWVPA+KRRER                +     +KR R+  + SS    
Sbjct: 157 RGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQGHNNNNNNHKNKRQREDPSASSLVST 216

Query: 138 -------GFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHD 197
                  G E+G FP+++ ++AVF+C++M+++++    DQ AYQ AV+IGGH+FKGIL+D
Sbjct: 217 RLPSNTNGLEVGKFPSKVRTSAVFQCIQMSSIED--DEDQLAYQAAVSIGGHVFKGILYD 276

Query: 198 HGPDQ---------------------QQHHHNPPISA---SPDGGALLITTADSAALLDP 230
            G +                      Q HHHN    A   +  GG    T A  +  LD 
Sbjct: 277 QGHESQYNNMVAAGGDTSSGGSAGGVQHHHHNSAAVATATTTSGGD--ATAAGPSNFLD- 336

[Close]

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-44
Identity = 119/288 (41.32%), Postives = 155/288 (53.82%), Query Frame = 0


Query: 5   QNYESFETEQQQQGGE------RFGY-------SGENSPARSSLVMVRSGGDGGGGKV-- 64
           Q  E  + +QQQQ          FG        +  N+ +RS    V S  + GG  V  
Sbjct: 60  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTR 119

Query: 65  ---ISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLI-------- 124
              ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL         
Sbjct: 120 QGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHH 179

Query: 125 --------------STTGGDSKRPRDTHA---------------TSSGFEIG-NFPAEIN 184
                           +GGD+   +D                  ++SG E+  + P E+N
Sbjct: 180 SASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVN 239

Query: 185 STAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPDQQQHHH-----NPPI 230
           S A+FRCVR+++++E      YAYQTAVNIGGHIFKGIL+D GP+ Q +HH     +   
Sbjct: 240 SPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTAT 299

[Close]

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-40
Identity = 109/263 (41.44%), Postives = 150/263 (57.03%), Query Frame = 0


Query: 10  FETEQQQQ---------GGERFGYSGEN--SPARSSLVMVRSGGDGGGGKVISCQDCGNQ 69
           F+ +QQQQ          G   G S  +    +  +L+M+RSG   GG    SCQDCGNQ
Sbjct: 70  FQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP---SCQDCGNQ 129

Query: 70  AKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLISTTGGDS---------KRPR 129
           +KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER    + G           KR R
Sbjct: 130 SKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQR 189

Query: 130 D---THATS-----------SGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTA 189
           +     +TS           SG E+GNFP E++S+AVFRCVR++++D+    ++YAY+TA
Sbjct: 190 ERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDE--EEEYAYKTA 249

Query: 190 VNIGGHIFKGILHDHGPDQQQHHHNPP-----ISASPDGGALL--------ITTADSAAL 225
           V+IGGH+FKG+L+D GP ++            I+A P   +          +  + S   
Sbjct: 250 VSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHY 309

[Close]

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.2e-39
Identity = 101/257 (39.30%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 22  FGYSGENSPARSS---LVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFL 81
           F    ++ P RSS     + R G        ++CQDCGNQAKKDC HMRCRTCCKSRGF 
Sbjct: 93  FNVVSDHEPVRSSTGGFTVTRQGN-------MNCQDCGNQAKKDCPHMRCRTCCKSRGFD 152

Query: 82  CETHVKSTWVPASKRRERLISTTGGDSKRPRD---------------------------- 141
           C+THVKSTWV A+KRRER        +KR RD                            
Sbjct: 153 CQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSAL 212

Query: 142 -----THATSSGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKG 201
                 +A+SSG E  + P EI+S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKG
Sbjct: 213 ACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDE--DEEYAYQTAVSIGGHVFKG 272

Query: 202 ILHDHGPDQQQH-------------HHNPPISASPDGGALLITTA--DSAALLDPPPSYP 225
           IL+D GP    H             HH   + ++P        TA   +   +DP   Y 
Sbjct: 273 ILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYT 332

[Close]

BLAST of CmaCh16G006400 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-49
Identity = 116/265 (43.77%), Postives = 159/265 (60.00%), Query Frame = 0


Query: 21  RFGYSGENSPA----RSSLVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG 80
           +F  SGE S A     ++++M+RSGG GGG   +SCQDCGNQAKKDC HMRCRTCCKSRG
Sbjct: 109 QFDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRG 168

Query: 81  FLCETHVKSTWVPASKRRER--LISTTGGDSKRPR----------DTHATS--------- 140
           F C THV+STWVPA+KRRER   ++T    ++ PR          +  ATS         
Sbjct: 169 FECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIP 228

Query: 141 --SGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPD 200
             SG E+GNFPAE++S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGIL+D GP 
Sbjct: 229 SHSGLEVGNFPAEVSSSAVFRCVRVSSVED--GEEEFAYQTAVSIGGHIFKGILYDLGPG 288

Query: 201 QQQHHHNPPI-----------------------------SASPDGGALLITTADSAALLD 230
                    +                             S++P+ G +  ++A +A  +D
Sbjct: 289 SSGGGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYID 348

[Close]

BLAST of CmaCh16G006400 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-45
Identity = 119/288 (41.32%), Postives = 155/288 (53.82%), Query Frame = 0


Query: 5   QNYESFETEQQQQGGE------RFGY-------SGENSPARSSLVMVRSGGDGGGGKV-- 64
           Q  E  + +QQQQ          FG        +  N+ +RS    V S  + GG  V  
Sbjct: 60  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTR 119

Query: 65  ---ISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLI-------- 124
              ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL         
Sbjct: 120 QGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHH 179

Query: 125 --------------STTGGDSKRPRDTHA---------------TSSGFEIG-NFPAEIN 184
                           +GGD+   +D                  ++SG E+  + P E+N
Sbjct: 180 SASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVN 239

Query: 185 STAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPDQQQHHH-----NPPI 230
           S A+FRCVR+++++E      YAYQTAVNIGGHIFKGIL+D GP+ Q +HH     +   
Sbjct: 240 SPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTAT 299

[Close]

BLAST of CmaCh16G006400 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 166.0 bits (419), Expect = 3.5e-41
Identity = 109/263 (41.44%), Postives = 150/263 (57.03%), Query Frame = 0


Query: 10  FETEQQQQ---------GGERFGYSGEN--SPARSSLVMVRSGGDGGGGKVISCQDCGNQ 69
           F+ +QQQQ          G   G S  +    +  +L+M+RSG   GG    SCQDCGNQ
Sbjct: 70  FQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGP---SCQDCGNQ 129

Query: 70  AKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLISTTGGDS---------KRPR 129
           +KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER    + G           KR R
Sbjct: 130 SKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQR 189

Query: 130 D---THATS-----------SGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTA 189
           +     +TS           SG E+GNFP E++S+AVFRCVR++++D+    ++YAY+TA
Sbjct: 190 ERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDE--EEEYAYKTA 249

Query: 190 VNIGGHIFKGILHDHGPDQQQHHHNPP-----ISASPDGGALL--------ITTADSAAL 225
           V+IGGH+FKG+L+D GP ++            I+A P   +          +  + S   
Sbjct: 250 VSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHY 309

[Close]

BLAST of CmaCh16G006400 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-40
Identity = 101/257 (39.30%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 22  FGYSGENSPARSS---LVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFL 81
           F    ++ P RSS     + R G        ++CQDCGNQAKKDC HMRCRTCCKSRGF 
Sbjct: 93  FNVVSDHEPVRSSTGGFTVTRQGN-------MNCQDCGNQAKKDCPHMRCRTCCKSRGFD 152

Query: 82  CETHVKSTWVPASKRRERLISTTGGDSKRPRD---------------------------- 141
           C+THVKSTWV A+KRRER        +KR RD                            
Sbjct: 153 CQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSAL 212

Query: 142 -----THATSSGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKG 201
                 +A+SSG E  + P EI+S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKG
Sbjct: 213 ACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDE--DEEYAYQTAVSIGGHVFKG 272

Query: 202 ILHDHGPDQQQH-------------HHNPPISASPDGGALLITTA--DSAALLDPPPSYP 225
           IL+D GP    H             HH   + ++P        TA   +   +DP   Y 
Sbjct: 273 ILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYT 332

[Close]

BLAST of CmaCh16G006400 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-40
Identity = 101/257 (39.30%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 22  FGYSGENSPARSS---LVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFL 81
           F    ++ P RSS     + R G        ++CQDCGNQAKKDC HMRCRTCCKSRGF 
Sbjct: 93  FNVVSDHEPVRSSTGGFTVTRQGN-------MNCQDCGNQAKKDCPHMRCRTCCKSRGFD 152

Query: 82  CETHVKSTWVPASKRRERLISTTGGDSKRPRD---------------------------- 141
           C+THVKSTWV A+KRRER        +KR RD                            
Sbjct: 153 CQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSRGGGDDDDDDKEDEKNDSCGGGSAL 212

Query: 142 -----THATSSGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKG 201
                 +A+SSG E  + P EI+S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKG
Sbjct: 213 ACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSSIDDE--DEEYAYQTAVSIGGHVFKG 272

Query: 202 ILHDHGPDQQQH-------------HHNPPISASPDGGALLITTA--DSAALLDPPPSYP 225
           IL+D GP    H             HH   + ++P        TA   +   +DP   Y 
Sbjct: 273 ILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSAATTNAVTAVNTNNGSIDPSSLYT 332

The following BLAST results are available for this feature:

BLAST of CmaCh16G006400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD40	2.2e-48	43.77	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
K4B6C9	2.7e-46	43.56	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9LQZ5	2.5e-44	41.32	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9XGX0	5.0e-40	41.44	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9FXH7	3.2e-39	39.30	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of CmaCh16G006400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	1.6e-49	43.77	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	1.8e-45	41.32	SHI-related sequence 5	[more]
AT5G66350.1	3.5e-41	41.44	Lateral root primordium (LRP) protein-related	[more]
AT1G19790.1	2.3e-40	39.30	SHI-related sequence 7	[more]
AT1G19790.2	2.3e-40	39.30	SHI-related sequence 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 51..93 e-value: 2.4E-27 score: 92.6
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 123..172 e-value: 3.3E-24 score: 82.5
None	No IPR available	PFAM	PF05142	DUF702	coord: 50..173 e-value: 5.3E-50 score: 169.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 19..226
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 19..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006400.1	CmaCh16G006400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding