CmaCh16G006170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Small nuclear ribonucleoprotein Sm D2
Location	Cma_Chr16: 3190219 .. 3193761 (-)
RNA-Seq Expression	CmaCh16G006170
Synteny	CmaCh16G006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTATGCAAGTGTAAGAAGTAGTGTCTATAATGAATTCAGGTATGTACATTTGTTTACTTTAGGGAAGAGTTCAGATATTAAGTAGCTTTTAGCTTATTATTCATTTGGCAGTGTATTGAAACCTACTGATGAAGTCCCTTGGCTTTGAACTCTTAGTGTGTTGTATTGTAAATAACTTTCAGAAGGCTAAATGACCTTTTGTTGGTTTCTTTTTTCTTGTATATTAGCCTCTCTTTGTGTAGATTATATCCTCATTTTAGTTGGGTTATTATATTCTTAGTGAAGTGCGAGTTTATAACTACTTTATAAGGATGTAGAAAACTCTCTTTAACAGATGTGTTTTAAAATCGTGAGGCTAATAGCGATACGTAACGGGCCAAAGTGAACAATATCTGCTGGTGGTTGGTTTAAGTTGTTACAAAGAACATTAGAGCTAGTCACCGAATGGTGTGCTAGTGAGAATGTCGACCCCAAGGGGATGGATTGTGAGATCCCACGGGGCTATTTCCAATAGCTAGTCACCAGGAGGTATGCCAGCGAGGACGTTCGACCCTTAAGGGGGTGGATTGTGTCTCACAAGGCTGTTACAAATGATATCAGAGCTAGTCACCGAACGGTGTGCCAACAAGGACGCTGGACCCCCCATAGGTGGATTGTGAGATCCCACATAGTTGTTACAAATGATATCAGAGTTAGTCATCGGGTGGTGTGCCAACGAGGACACTGGACTGCTAGATTGTAAGATCTCACCATCGATTGGAGAGAGGAACTAAGCATTTCTTATAAAGGTGTGAATATGAAATCGCGAGGTTGACGACGATACGTAATGGTTGAAAAAGACTATTACATATCAATTGATTTTTGTTTTTTATTTTTTAATATTGTTTGTTTGCCTAATTTTTTAAAATAAAAAATAAAAAATAAAAAATAATAGGGAGATAGTTATTAAAGGTGTCTTTTAGTAAGATAATTGTTCAACTCATCTATTTATTTATTTCAAATATTTACAATTTACAATTCAATTTAAATACATATTTTAAAAAATTATCTTCAAAATCGTTAAATTTATATAATATATATATATATATATAATTGTATCAATCAAAACGTGTTTTGTTGGTTGAATCCATTTAGTTTTGAATTTAGGATTTTTAGTTCAAAACGCAAAAACCCCTGTCGTTTAGGGTTTTTTTTTTCATTTTTGTTTGTTTAAGGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGGTAAGCTCTCTTTCTCTCTCTGTCGGCCTCTTCTCTTAGTTTCGTTATTTCCTCCTTTCTGATGATTTTTTCGTGCAGTTTCTCCATTATTGTGTTCTTAAGATATTGTATCGAACTGAAATATTATGTACTGAACTCACTCGGGACCTTGATTGAAGAGTTAACATTCTCGTGATGTGTTTTCTTGATTAATTTATCCGACACTGTAGTTTCTTTGGAGCATGATGTTTTTTAGGGCAATTTTAGGCACATCTTGTTTTATGTGATTATGCTGGTGCGGTTGTGATTACTGTTATGCTTTTTATGTGCTTATGGTCGTATCTTTAATGTATTTTCAGCCTAACGCCAAGGACATTGCAGAAGATCTACCTCTAGTTACAAAATGAGGTATTATGTTTTTAGGTTTTTGTATATTTTTTTATGCGCATTTCTTAATCTGCTATTTTTAAATTCATACATACTAATGGCTTTCATGTCCGCCCCCCTTTTGTCTTCAATTGCAGCCGACCAATGGAGGAAGATGTAAGTTCTTTAGTCTTTTATCCTTTCAGTTTCAGTACTTTCATCCAATACATGCTGCCAAATTGGTTCAGTTTTATGTCTTATGCACAAGTGTGAATGAATCTCTTATAATTTATTTGTTTCTTTTAAATATGAAATGTCTGCTATCTTCTTGGTGCTATGGTTGGCAGGAAGCAATATGATTTTTTAAGGCTAGTTTTATACCTGCTGAAGTAAAACTTTGGTTCAATTCTGTATTCTCTTTCCACTTTGTTTTTATGGTTGATTATTGTGATTTTTTTCCCCATCTATTTGATGATTGTTTACCAATTTCTTACTCTTTTGCGTTATCCAAAAGGTTACATTTCTAATAAAAAAAATGATAACTATGACAATTCCATAAAGTTTATTTATTTTAATTTTTTTCAGTAACTATGTAGGTTCTGTTTCTTTTTTATCATATCTAGTGGTAGCTCAACGTTTTCTTTTACTAGGATTTTTTTTTTCAAATCTTTCCAGCCCCCCTTCCCCAGTGTGTTCCTTTGGGGTTTTATTGCAAAATCTTTGGACTTCTGCAATCGTATTCTATTTATATTTTTACTTCCAACTTTACTGTAGTGTTTCTACAAACACCATTAGAGTGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTCTGCGTGTTTAACAGCTGCGCTTTGTAATTAACAGGCAGAACTTTTCAGTTAAAAACTATCTCTATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTGCTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTCATCTTATGTATTATTACTATGACCAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

mRNA sequence

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

Coding sequence (CDS)

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MTLAKLCKTAFDMLILCCKQDSGEGLICEMNTISTSAHTFLLPIFSFDLLRYSSPLRRLPRPRLLRRSPSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

Homology

[Close]

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P   ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 11  TPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 70

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 71  EMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-41
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 78  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 137
           E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK
Sbjct: 20  EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 138 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           TGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80  TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]

BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 12  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 12  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 71

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of CmaCh16G006170 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:

BLAST of CmaCh16G006170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZF8	5.0e-45	85.29	Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1	[more]
P62316	5.0e-45	85.29	Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=...	[more]
P62317	5.0e-45	85.29	Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV...	[more]
Q9VI10	1.1e-44	84.31	Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722...	[more]
Q18786	7.5e-41	85.11	Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of CmaCh16G006170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47640.1	7.7e-49	95.88	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.2	7.7e-49	95.88	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	7.7e-49	95.88	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.4	7.7e-49	95.88	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	7.7e-49	95.88	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 90..169 e-value: 5.1E-20 score: 82.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 93..167 e-value: 2.3E-18 score: 65.6
None	No IPR available	GENE3D	2.30.30.100		coord: 80..172 e-value: 3.0E-41 score: 141.1
None	No IPR available	PANTHER	PTHR12777:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 75..172
IPR027248	Small nuclear ribonucleoprotein Sm D2	PANTHER	PTHR12777	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 75..172
IPR027248	Small nuclear ribonucleoprotein Sm D2	CDD	cd01720	Sm_D2	coord: 82..171 e-value: 1.53572E-63 score: 188.308
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 85..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006170.1	CmaCh16G006170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex